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The Biochemical journal2002; 362(Pt 3); 749-754; doi: 10.1042/0264-6021:3620749

A cytochrome c mutant with high electron transfer and antioxidant activities but devoid of apoptogenic effect.

Abstract: A cytochrome c mutant lacking apoptogenic function but competent in electron transfer and antioxidant activities has been constructed. To this end, mutant species of horse and yeast cytochromes c with substitutions in the N-terminal alpha-helix or position 72 were obtained. It was found that yeast cytochrome c was much less effective than the horse protein in activating respiration of rat liver mitoplasts deficient in endogenous cytochrome c as well as in inhibition of H(2)O(2) production by the initial segment of the respiratory chain of intact rat heart mitochondria. The major role in the difference between the horse and yeast proteins was shown to be played by the amino acid residue in position 4 (glutamate in horse, and lysine in yeast; horse protein numbering). A mutant of the yeast cytochrome c containing K4E and some other "horse" modifications in the N-terminal alpha-helix, proved to be (i) much more active in electron transfer and antioxidant activity than the wild-type yeast cytochrome c and (ii), like the yeast cytochrome c, inactive in caspase stimulation, even if added in 400-fold excess compared with the horse protein. Thus this mutant seems to be a good candidate for knock-in studies of the role of cytochrome c-mediated apoptosis, in contrast with the horse K72R, K72G, K72L and K72A mutant cytochromes that at low concentrations were less active in apoptosis than the wild-type, but were quite active when the concentrations were increased by a factor of 2-12.
Publication Date: 2002-03-07 PubMed ID: 11879204PubMed Central: PMC1222441DOI: 10.1042/0264-6021:3620749Google Scholar: Lookup
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  • Comparative Study
  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.

This research article is focused on creating a cytochrome c mutant that retains its electron transfer and antioxidant functions, but no longer triggers apoptosis.

Cytochrome c Mutant Research Objective

  • The key objective of this research was to build a cytochrome c mutant that does not have the ability to activate apoptosis (programmed cell death) but still has endothelial transfer and antioxidant functions.

Study Methods and Mutant Creation

  • To achieve the desired objective, researchers experimented with mutant forms of horse and yeast cytochrome c, specifically making modifications to the N-terminal alpha-helix or position 72.
  • The action of yeast cytochrome c, as opposed to horse protein, was found to be less effective in activating respiration in deficient rat liver mitoplasts and in inhibiting H(2)O(2) production in the respiratory chain of rat heart mitochondria.
  • Researchers credited the difference in performance to the amino residue located at position 4. In the horse protein, it is glutamate, whereas in yeast, it is lysine.

Results and Observations

  • A mutant yeast cytochrome c with the K4E mutation in the N-terminal alpha-helix, combined with other “horse” modifications, was found to be much more effective in transferring electrons and antioxidant activity compared to the native yeast cytochrome c.
  • Despite its increased efficiency, this mutant remained as ineffective as the native yeast version in stimulating caspases, even when used in 400 times excess compared to the horse protein.
  • Consequently, this mutant stands as a likely candidate for further studies on cytochrome c-mediated apoptosis.

Comparison with Other Mutants

  • A point of contrast was established with horse mutant cytochromes, K72R, K72G, K72L and K72A that showed inactive to similar apoptotic activity as the wild type at lower concentrations. But their apoptotic activity increased significantly with a 2-12 times rise in concentration.

Cite This Article

APA
Abdullaev ZKh, Bodrova ME, Chernyak BV, Dolgikh DA, Kluck RM, Pereverzev MO, Arseniev AS, Efremov RG, Kirpichnikov MP, Mokhova EN, Newmeyer DD, Roder H, Skulachev VP. (2002). A cytochrome c mutant with high electron transfer and antioxidant activities but devoid of apoptogenic effect. Biochem J, 362(Pt 3), 749-754. https://doi.org/10.1042/0264-6021:3620749

Publication

ISSN: 0264-6021
NlmUniqueID: 2984726R
Country: England
Language: English
Volume: 362
Issue: Pt 3
Pages: 749-754

Researcher Affiliations

Abdullaev, Ziedulla Kh
  • Laboratory of Spectral Analysis, M.M. Shemyakin and Y.A. Ovchinnikov Institute of Bioorganic Chemistry, Moscow 177871, Russia.
Bodrova, Marina E
    Chernyak, Boris V
      Dolgikh, Dmitry A
        Kluck, Ruth M
          Pereverzev, Mikhail O
            Arseniev, Alexander S
              Efremov, Roman G
                Kirpichnikov, Mikhail P
                  Mokhova, Elena N
                    Newmeyer, Donald D
                      Roder, Heinrich
                        Skulachev, Vladimir P

                          MeSH Terms

                          • Amino Acid Sequence
                          • Amino Acid Substitution
                          • Animals
                          • Antioxidants / metabolism
                          • Apoptosis / physiology
                          • Caspases / metabolism
                          • Cytochrome c Group / chemistry
                          • Cytochrome c Group / genetics
                          • Cytochrome c Group / metabolism
                          • Cytochrome c Group / pharmacology
                          • Horses
                          • Kinetics
                          • Mitochondria, Liver / metabolism
                          • Mutagenesis, Site-Directed
                          • Protein Structure, Secondary
                          • Rats
                          • Recombinant Proteins / chemistry
                          • Recombinant Proteins / metabolism
                          • Recombinant Proteins / pharmacology
                          • Saccharomyces cerevisiae / metabolism
                          • Sequence Alignment
                          • Sequence Homology, Amino Acid
                          • Xenopus laevis

                          References

                          This article includes 28 references
                          1. Kluck RM, Bossy-Wetzel E, Green DR, Newmeyer DD. The release of cytochrome c from mitochondria: a primary site for Bcl-2 regulation of apoptosis.. Science 1997 Feb 21;275(5303):1132-6.
                            pubmed: 9027315doi: 10.1126/science.275.5303.1132google scholar: lookup
                          2. Yang J, Liu X, Bhalla K, Kim CN, Ibrado AM, Cai J, Peng TI, Jones DP, Wang X. Prevention of apoptosis by Bcl-2: release of cytochrome c from mitochondria blocked.. Science 1997 Feb 21;275(5303):1129-32.
                            pubmed: 9027314doi: 10.1126/science.275.5303.1129google scholar: lookup
                          3. Korshunov SS, Skulachev VP, Starkov AA. High protonic potential actuates a mechanism of production of reactive oxygen species in mitochondria.. FEBS Lett 1997 Oct 13;416(1):15-8.
                            pubmed: 9369223doi: 10.1016/s0014-5793(97)01159-9google scholar: lookup
                          4. Skulachev VP. Cytochrome c in the apoptotic and antioxidant cascades.. FEBS Lett 1998 Feb 27;423(3):275-80.
                            pubmed: 9515723doi: 10.1016/s0014-5793(98)00061-1google scholar: lookup
                          5. Pollock WB, Rosell FI, Twitchett MB, Dumont ME, Mauk AG. Bacterial expression of a mitochondrial cytochrome c. Trimethylation of lys72 in yeast iso-1-cytochrome c and the alkaline conformational transition.. Biochemistry 1998 Apr 28;37(17):6124-31.
                            pubmed: 9558351doi: 10.1021/bi972188dgoogle scholar: lookup
                          6. Hakem R, Hakem A, Duncan GS, Henderson JT, Woo M, Soengas MS, Elia A, de la Pompa JL, Kagi D, Khoo W, Potter J, Yoshida R, Kaufman SA, Lowe SW, Penninger JM, Mak TW. Differential requirement for caspase 9 in apoptotic pathways in vivo.. Cell 1998 Aug 7;94(3):339-52.
                            pubmed: 9708736doi: 10.1016/s0092-8674(00)81477-4google scholar: lookup
                          7. Yoshida H, Kong YY, Yoshida R, Elia AJ, Hakem A, Hakem R, Penninger JM, Mak TW. Apaf1 is required for mitochondrial pathways of apoptosis and brain development.. Cell 1998 Sep 18;94(6):739-50.
                            pubmed: 9753321doi: 10.1016/s0092-8674(00)81733-xgoogle scholar: lookup
                          8. Chautan M, Chazal G, Cecconi F, Gruss P, Golstein P. Interdigital cell death can occur through a necrotic and caspase-independent pathway.. Curr Biol 1999 Sep 9;9(17):967-70.
                            pubmed: 10508592doi: 10.1016/s0960-9822(99)80425-4google scholar: lookup
                          9. Korshunov SS, Krasnikov BF, Pereverzev MO, Skulachev VP. The antioxidant functions of cytochrome c.. FEBS Lett 1999 Nov 26;462(1-2):192-8.
                            pubmed: 10580118doi: 10.1016/s0014-5793(99)01525-2google scholar: lookup
                          10. Kluck RM, Ellerby LM, Ellerby HM, Naiem S, Yaffe MP, Margoliash E, Bredesen D, Mauk AG, Sherman F, Newmeyer DD. Determinants of cytochrome c pro-apoptotic activity. The role of lysine 72 trimethylation.. J Biol Chem 2000 May 26;275(21):16127-33.
                            pubmed: 10821864doi: 10.1074/jbc.275.21.16127google scholar: lookup
                          11. Li K, Li Y, Shelton JM, Richardson JA, Spencer E, Chen ZJ, Wang X, Williams RS. Cytochrome c deficiency causes embryonic lethality and attenuates stress-induced apoptosis.. Cell 2000 May 12;101(4):389-99.
                            pubmed: 10830166doi: 10.1016/s0092-8674(00)80849-1google scholar: lookup
                          12. Samartsev VN, Simonyan RA, Markova OV, Mokhova EN, Skulachev VP. Comparative study on uncoupling effects of laurate and lauryl sulfate on rat liver and skeletal muscle mitochondria.. Biochim Biophys Acta 2000 Jul 20;1459(1):179-90.
                            pubmed: 10924910doi: 10.1016/s0005-2728(00)00146-8google scholar: lookup
                          13. Gabai VL, Meriin AB, Yaglom JA, Wei JY, Mosser DD, Sherman MY. Suppression of stress kinase JNK is involved in HSP72-mediated protection of myogenic cells from transient energy deprivation. HSP72 alleviates the stewss-induced inhibition of JNK dephosphorylation.. J Biol Chem 2000 Dec 1;275(48):38088-94.
                            pubmed: 10978340doi: 10.1074/jbc.M006632200google scholar: lookup
                          14. Joza N, Susin SA, Daugas E, Stanford WL, Cho SK, Li CY, Sasaki T, Elia AJ, Cheng HY, Ravagnan L, Ferri KF, Zamzami N, Wakeham A, Hakem R, Yoshida H, Kong YY, Mak TW, Zúñiga-Pflücker JC, Kroemer G, Penninger JM. Essential role of the mitochondrial apoptosis-inducing factor in programmed cell death.. Nature 2001 Mar 29;410(6828):549-54.
                            pubmed: 11279485doi: 10.1038/35069004google scholar: lookup
                          15. Yu T, Wang X, Purring-Koch C, Wei Y, McLendon GL. A mutational epitope for cytochrome C binding to the apoptosis protease activation factor-1.. J Biol Chem 2001 Apr 20;276(16):13034-8.
                            pubmed: 11112785doi: 10.1074/jbc.M009773200google scholar: lookup
                          16. Margoliash E, Schejter A. Cytochrome c.. Adv Protein Chem 1966;21:113-286.
                            pubmed: 5333288doi: 10.1016/s0065-3233(08)60128-xgoogle scholar: lookup
                          17. Carswell EA, Old LJ, Kassel RL, Green S, Fiore N, Williamson B. An endotoxin-induced serum factor that causes necrosis of tumors.. Proc Natl Acad Sci U S A 1975 Sep;72(9):3666-70.
                            pubmed: 1103152doi: 10.1073/pnas.72.9.3666google scholar: lookup
                          18. Polastro E, Looze Y, Léonis J. Evidence that trimethylation of iso-1-cytochrome c from Saccharomyces cerevisiae does not alter its functional properties [proceedings].. Arch Int Physiol Biochim 1976 Dec;84(5):1099-100.
                            pubmed: 66015
                          19. Boveris A, Martino E, Stoppani AO. Evaluation of the horseradish peroxidase-scopoletin method for the measurement of hydrogen peroxide formation in biological systems.. Anal Biochem 1977 May 15;80(1):145-58.
                            pubmed: 883627doi: 10.1016/0003-2697(77)90634-0google scholar: lookup
                          20. Mokhova EN, Skulachev VP, Zhigacheva IV. Activation of the external pathway of NADH oxidation in liver mitochondria of cold-adapted rats.. Biochim Biophys Acta 1978 Mar 13;501(3):415-23.
                            pubmed: 204343doi: 10.1016/0005-2728(78)90109-3google scholar: lookup
                          21. Dethmers JK, Ferguson-Miller S, Margoliash E. Comparison of yeast and beef cytochrome c oxidases. Kinetics and binding of horse, fungal, and Euglena cytochromes c.. J Biol Chem 1979 Dec 10;254(23):11973-81.
                            pubmed: 227884
                          22. Hay R, Böhni P, Gasser S. How mitochondria import proteins.. Biochim Biophys Acta 1984 Jan 27;779(1):65-87.
                            pubmed: 6318829doi: 10.1016/0304-4157(84)90004-2google scholar: lookup
                          23. Kirillova GP, Ablyayeva NA, Mokhova EN. Fast cold-induced activation of the external pathway of NADH oxidation in liver mitochondria of hyperthyroid rats.. Biochim Biophys Acta 1985 Jan 23;806(1):75-80.
                            pubmed: 3967007doi: 10.1016/0005-2728(85)90083-0google scholar: lookup
                          24. Yanisch-Perron C, Vieira J, Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.. Gene 1985;33(1):103-19.
                            pubmed: 2985470doi: 10.1016/0378-1119(85)90120-9google scholar: lookup
                          25. Goglia F, Liverini G, Lanni A, Bottiglieri S, Barletta A. Alteration in hepatic mitochondrial compartment of cold-acclimated rats. Association with enhanced triiodothyronine serum levels. A morphometric/stereologic study by electron microscopy.. Exp Biol 1985;44(1):41-56.
                            pubmed: 3849431
                          26. Vriend G. WHAT IF: a molecular modeling and drug design program.. J Mol Graph 1990 Mar;8(1):52-6, 29.
                            pubmed: 2268628doi: 10.1016/0263-7855(90)80070-vgoogle scholar: lookup
                          27. Liu X, Kim CN, Yang J, Jemmerson R, Wang X. Induction of apoptotic program in cell-free extracts: requirement for dATP and cytochrome c.. Cell 1996 Jul 12;86(1):147-57.
                            pubmed: 8689682doi: 10.1016/s0092-8674(00)80085-9google scholar: lookup
                          28. Kluck RM, Martin SJ, Hoffman BM, Zhou JS, Green DR, Newmeyer DD. Cytochrome c activation of CPP32-like proteolysis plays a critical role in a Xenopus cell-free apoptosis system.. EMBO J 1997 Aug 1;16(15):4639-49.
                            pubmed: 9303308doi: 10.1093/emboj/16.15.4639google scholar: lookup

                          Citations

                          This article has been cited 15 times.
                          1. Yadav N, Gogada R, O'Malley J, Gundampati RK, Jayanthi S, Hashmi S, Lella R, Zhang D, Wang J, Kumar R, Suresh Kumar TK, Chandra D. Molecular insights on cytochrome c and nucleotide regulation of apoptosome function and its implication in cancer. Biochim Biophys Acta Mol Cell Res 2020 Jan;1867(1):118573.
                            doi: 10.1016/j.bbamcr.2019.118573pubmed: 31678591google scholar: lookup
                          2. Shalaeva DN, Dibrova DV, Galperin MY, Mulkidjanian AY. Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly. Biol Direct 2015 May 27;10:29.
                            doi: 10.1186/s13062-015-0059-4pubmed: 26014357google scholar: lookup
                          3. Amdursky N, Ferber D, Bortolotti CA, Dolgikh DA, Chertkova RV, Pecht I, Sheves M, Cahen D. Solid-state electron transport via cytochrome c depends on electronic coupling to electrodes and across the protein. Proc Natl Acad Sci U S A 2014 Apr 15;111(15):5556-61.
                            doi: 10.1073/pnas.1319351111pubmed: 24706771google scholar: lookup
                          4. Zaidi S, Hassan MI, Islam A, Ahmad F. The role of key residues in structure, function, and stability of cytochrome-c. Cell Mol Life Sci 2014 Jan;71(2):229-55.
                            doi: 10.1007/s00018-013-1341-1pubmed: 23615770google scholar: lookup
                          5. Sheet T, Supakar S, Banerjee R. Conformational preference of 'CαNN' short peptide motif towards recognition of anions. PLoS One 2013;8(3):e57366.
                            doi: 10.1371/journal.pone.0057366pubmed: 23516403google scholar: lookup
                          6. Josephs TM, Liptak MD, Hughes G, Lo A, Smith RM, Wilbanks SM, Bren KL, Ledgerwood EC. Conformational change and human cytochrome c function: mutation of residue 41 modulates caspase activation and destabilizes Met-80 coordination. J Biol Inorg Chem 2013 Mar;18(3):289-97.
                            doi: 10.1007/s00775-012-0973-1pubmed: 23334161google scholar: lookup
                          7. Verissimo AF, Sanders J, Daldal F, Sanders C. Engineering a prokaryotic apocytochrome c as an efficient substrate for Saccharomyces cerevisiae cytochrome c heme lyase. Biochem Biophys Res Commun 2012 Jul 20;424(1):130-5.
                            doi: 10.1016/j.bbrc.2012.06.088pubmed: 22732413google scholar: lookup
                          8. Kulikov AV, Shilov ES, Mufazalov IA, Gogvadze V, Nedospasov SA, Zhivotovsky B. Cytochrome c: the Achilles' heel in apoptosis. Cell Mol Life Sci 2012 Jun;69(11):1787-97.
                            doi: 10.1007/s00018-011-0895-zpubmed: 22179840google scholar: lookup
                          9. Zhu Y, Li M, Wang X, Jin H, Liu S, Xu J, Chen Q. Caspase cleavage of cytochrome c1 disrupts mitochondrial function and enhances cytochrome c release. Cell Res 2012 Jan;22(1):127-41.
                            doi: 10.1038/cr.2011.82pubmed: 21577235google scholar: lookup
                          10. Krasnikov BF, Melik-Nubarov NS, Zorova LD, Kuzminova AE, Isaev NK, Cooper AJ, Zorov DB. Synthetic and natural polyanions induce cytochrome c release from mitochondria in vitro and in situ. Am J Physiol Cell Physiol 2011 May;300(5):C1193-203.
                            doi: 10.1152/ajpcell.00519.2009pubmed: 21209366google scholar: lookup
                          11. Tait SW, Green DR. Mitochondria and cell death: outer membrane permeabilization and beyond. Nat Rev Mol Cell Biol 2010 Sep;11(9):621-32.
                            doi: 10.1038/nrm2952pubmed: 20683470google scholar: lookup
                          12. Brittain T, Skommer J, Raychaudhuri S, Birch N. An antiapoptotic neuroprotective role for neuroglobin. Int J Mol Sci 2010 May 27;11(6):2306-21.
                            doi: 10.3390/ijms11062306pubmed: 20640154google scholar: lookup
                          13. Raychaudhuri S, Skommer J, Henty K, Birch N, Brittain T. Neuroglobin protects nerve cells from apoptosis by inhibiting the intrinsic pathway of cell death. Apoptosis 2010 Apr;15(4):401-11.
                            doi: 10.1007/s10495-009-0436-5pubmed: 20091232google scholar: lookup
                          14. Andronis EA, Roubelakis-Angelakis KA. Short-term salinity stress in tobacco plants leads to the onset of animal-like PCD hallmarks in planta in contrast to long-term stress. Planta 2010 Jan;231(2):437-48.
                            doi: 10.1007/s00425-009-1060-xpubmed: 19937341google scholar: lookup
                          15. Chertkova RV, Sharonov GV, Feofanov AV, Bocharova OV, Latypov RF, Chernyak BV, Arseniev AS, Dolgikh DA, Kirpichnikov MP. Proapoptotic activity of cytochrome c in living cells: effect of K72 substitutions and species differences. Mol Cell Biochem 2008 Jul;314(1-2):85-93.
                            doi: 10.1007/s11010-008-9768-7pubmed: 18425421google scholar: lookup