Genetic Diversity of Kazakhstani Equus caballus (Linnaeus, 1758) Horse Breeds Inferred from Microsatellite Markers.
Abstract: Understanding the genetic diversity and structure of domesticated horse () populations is critical for long-term herd management and breeding programs. This study examines 435 horses from Kazakhstan, covering seven groups in three geographic areas using 11 STR markers. Identified are 136 alleles, with the mean number of alleles per locus ranging from 9 to 19. VHL20 is the most variable locus across groups, while loci HTG4, AHT4, AHT5, HTG7, and HMS3 are variable in most populations. The locus AHT5 in the Emba population shows the highest frequency of rare alleles, while the lowest frequency, 0.005, is observed in the Kulandy population. All loci were highly informative for the Kazakhstani populations of , with PIC values higher than 0.5. Pairwise variations in Wright's F distances show that the examined varieties have little genetic differentiation (0.05%), indicating a high degree of admixture and a continuing lineage sorting process. Phylogenetic and population structure analyses reveal three major clusters of Kazakh horses, representing (I) the Uralsk population of the Kushum breed and the monophyly of two groups: (II) the Kozhamberdy population of the Mugalzhar breed, and (III) the Mugalzhar-Kushum breed populations. Kazakhstani horse populations, while being regionally isolated, were recently in contact with each other.
Publication Date: 2023-09-30 PubMed ID: 37888550PubMed Central: PMC10611244DOI: 10.3390/vetsci10100598Google Scholar: Lookup
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Summary
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The research investigates the genetic diversity of domesticated horse breeds in Kazakhstan using microsatellite markers. The study’s findings identify variations within and among breed groups, highlighting points of interest for long-term management and breeding practices.
Research Methodology
- The study involved 435 horses from three different geographic areas of Kazakhstan. They are categorized into seven groups.
- To investigate the genetic diversity, 11 Short Tandem Repeat (STR) markers were used. STR markers are also known as microsatellites and are used in genetics to measure the variation at the DNA level.
Research Findings
- The research identified a total of 136 different alleles. An allele is a variation of a gene; in this case, each represents a different genetic variation within the horse population. The average number of alleles per locus, a fixed spot on a chromosome where a specific gene or marker is located, ranged from 9 to 19.
- VHL20 was identified as the most variable locus across the groups, suggesting it may be a valuable marker for distinguishing between these horse populations.
- A number of loci, including HTG4, AHT4, AHT5, HTG7, and HMS3, showed variability in most populations. This suggests there is significant genetic diversity within these horse populations.
- The locus AHT5 in the Emba population had the highest frequency of rare alleles, whereas the Kulandy population had the lowest.
- All loci were found to be highly informative for these Kazakhstani horse populations. This means the markers used in this study can be effectively used in future research for these specific horse populations.
Genetic Differentiation and Population Structure
- The researchers used Wright’s F-statistics to measure genetic differentiation between the horse populations. The statistic F measures the proportion of genetic variance in a subpopulation (a breed or a spatially separated group) relative to the total genetic variance.
- The researchers found only 0.05% differentiation between the groups, suggesting a high degree of genetic admixture and ongoing lineage sorting. This means there is ongoing mixing of genetic material among the groups despite their distinct geographic locations.
- The study found three major clusters of Kazakh horses: the Uralsk population of the Kushum breed, the Kozhamberdy population of the Mugalzhar breed, and the Mugalzhar-Kushum breed populations. However, these populations were in recent contact with each other, which further supports the findings of genetic mixing.
Cite This Article
APA
Orazymbetova Z, Ualiyeva D, Dossybayev K, Torekhanov A, Sydykov D, Mussayeva A, Baktybayev G.
(2023).
Genetic Diversity of Kazakhstani Equus caballus (Linnaeus, 1758) Horse Breeds Inferred from Microsatellite Markers.
Vet Sci, 10(10), 598.
https://doi.org/10.3390/vetsci10100598 Publication
Researcher Affiliations
- Kazakh Research Institute of Livestock and Fodder Production, Almaty 050035, Kazakhstan.
- Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty 050060, Kazakhstan.
- Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty 050060, Kazakhstan.
- Institute of Zoology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty 050060, Kazakhstan.
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China.
- Kazakh Research Institute of Livestock and Fodder Production, Almaty 050035, Kazakhstan.
- Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty 050060, Kazakhstan.
- Kazakh Research Institute of Livestock and Fodder Production, Almaty 050035, Kazakhstan.
- Kazakh Research Institute of Livestock and Fodder Production, Almaty 050035, Kazakhstan.
- Institute of Genetics and Physiology, Committee of Science of the Ministry of Science and Higher Education of the Republic of Kazakhstan, Almaty 050060, Kazakhstan.
- Kazakh Research Institute of Livestock and Fodder Production, Almaty 050035, Kazakhstan.
Grant Funding
- BR10764999 / Ministry of Agriculture of the Republic of Kazakhstan
Conflict of Interest Statement
The authors declare no conflict of interest.
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