Transcriptome Identification of Differential Mammary Genes of Kazakh Horses During Early Pregnancy.
Abstract: Kazakh mares have attracted widespread attention with their outstanding lactation traits. Lactation is a complex dynamic process regulated by multiple factors. The extensive application of transcriptome sequencing technology enables researchers to further explore this biological issue. This study selected three pregnant and three non-pregnant Kazakh mares as the research subject. Their mammary glands were taken for transcriptome sequencing. The results show that there are 9 lncRNAs and 122 mRNAs differentially expressed between the two groups. GO enrichment analysis shows that there are 175 molecular functions, 59 cellular components, and 555 biological processes, including cellular hormone metabolic process, hormone catabolic process, and I-kappaB kinase/NF-kappaB signaling. KEGG enrichment analysis exhibits that these differential genes are mainly enriched in the NF-kappa B signaling pathway, steroid hormone biosynthesis, breast cancer, ECM-receptor interaction, and MAPK signaling pathway. WNT4, DPP4, and NFKBIA are key nodes regulating breast activation. Conclusions: Through the comparative analysis of the transcriptome data of mammary tissues of pregnant and non-pregnant mares, relevant differentially expressed genes are screened and analyzed. This study provides valuable fundamental data for investigating candidate genes related to the lactation regulation and mammogenesis of Kazakh horses.
Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.
Publication Date: 2024-01-19 PubMed ID: 38246578DOI: 10.1016/j.gene.2024.148189Google Scholar: Lookup
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Summary
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This research study investigates the difference in mammary gland genes of Kazakh mares during early stages of pregnancy, through the use of transcriptome sequencing technology. The results offer significant foundational data necessary for understanding genes related to lactation regulation and breast development in these horses.
Objective of the Study
- The intent of the research was to explore the differences in mammary gland genes of Kazakh mares in early pregnancy. It aimed to provide insightful data that would be crucial in comprehending the molecular and biological regulation of lactation and breast development. The study was made possible by the use of transcriptome sequencing technology.
Methodology
- The study sample consisted of three pregnant and three non-pregnant Kazakh mares. Comparative analysis was conducted on the transcriptome data obtained from their mammary tissues.
- Transcriptome sequencing was done on the extracted mammary glands from the selected mares.
Findings of the Study
- The research identified 9 long non-coding RNAs (lncRNAs) and 122 mRNAs that were differentially expressed between the pregnant and non-pregnant groups.
- Gene Ontology (GO) enrichment analysis was carried out which displayed 175 molecular functions, 59 cellular components, and 555 biological processes including cellular hormone metabolic process, hormone catabolic process, and I-kappaB kinase/NF-kappaB signaling.
- Analysis also showed the differentially expressed genes were mainly enriched in the NF-kappa B signaling pathway, steroid hormone biosynthesis, breast cancer, ECM-receptor interaction, and MAPK signaling pathway.
- WNT4, DPP4, and NFKBIA were identified as key nodes involved in breast activation.
Conclusions of the Study
- The study supports the understanding of gene expression in Kazakh mares during the early stages of pregnancy.
- The research has offered useful insights and foundational data for identifying candidate genes that contribute to the regulation of lactation and breast development in these horses.
Cite This Article
APA
Ren W, Wang J, Zeng Y, Wang T, Meng J, Yao X.
(2024).
Transcriptome Identification of Differential Mammary Genes of Kazakh Horses During Early Pregnancy.
Gene, 148189.
https://doi.org/10.1016/j.gene.2024.148189 Publication
Researcher Affiliations
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China. Electronic address: 13201295117@163.com.
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China; Xinjiang Key Laboratory of Equine Breeding and Exercise Physiology, Urumqi 830052, China. Electronic address: wjw1262022@126.com.
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China. Electronic address: xjauzengyaqi@163.com.
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China. Electronic address: wtl13639911402@163.com.
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China. Electronic address: junm86@sina.com.
- College of Animal Science, Xinjiang Agricultural University, Urumqi 830052, China; Xinjiang Key Laboratory of Equine Breeding and Exercise Physiology, Urumqi 830052, China. Electronic address: yxk61@126.com.
Conflict of Interest Statement
Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
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