Evaluation of the genetic diversity and population structure of Gasterophilus pecorum in Xinjiang Province, China, using fluorescent microsatellites (SSR) markers.
Abstract: The genetic diversity of Gasterophilus pecorum populations consisting of 192 individuals sampled from Przewalski's horses (Equus ferus przewalskii) in Xinjiang Province, China, was evaluated using 12 microsatellite loci. The genetic variability within populations and genetic differentiation among populations were estimated. A total of 163 alleles were detected and the average value of observed number of alleles at each locus ranged from 7 to 19 (average 13.5625). The expected heterozygosity (He) varied from 0.5933 (GP361) to 0.9208 (GP253) and averaged 0.8426. The effective number of alleles (Ne) of the simple sequence repeat (SSR) markers was 7.1756, and it ranged from 2.4430 to 11.5214. The polymorphism information content (PIC) ranged from 0.5643 (GP361) to 0.9053 (GP253) (average 0.8119). The average Shannon's information index (I) was 2.1272. Parameters of genetic diversity (Ht, Hs and Gst) and F-statistic (Fis, Fit and Fst) were estimated. The mean of total gene diversity (Ht = 0.8798) and the average interspecific genetic diversity (Dst = 0.0110) showed that G. pecorum had a relatively high level of genetic variation, which was mainly within populations. The Fixation indices as Fst ranged from 0.0029 to 0.0950, and the Number of per generation migrants (Nm) among the populations varied from 2.3814 to 85.9745. These results indicate that the heterozygosity and genetic diversity of the G. pecorum populations were very high and that gene exchange was frequent. Correlation analyses demonstrated that the number of alleles and genetic diversity of the populations were not significantly different (p = 0.2). Unweighted Pair Group Method with Arithmetic mean (UPGMA) clustering analyses revealed a genetic similarity of 0.0671 - 0.1118. Analysis of molecular variance (AMOVA) demonstrated that the percentage of variation in the intrapopulation was small (0.67%) and the genetic variation in the G. pecorum populations was mainly exist within the species. An understanding of population genetic structure is not only crucial for assessing the actions and interactions of evolutionary forces in natural populations but also helps elucidate parasitic strategies in G. pecorum.
Copyright © 2018 Elsevier B.V. All rights reserved.
Publication Date: 2018-08-13 PubMed ID: 30253850DOI: 10.1016/j.vetpar.2018.08.005Google Scholar: Lookup
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Summary
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This research study evaluated the genetic diversity within a population of Gasterophilus pecorum parasites, using fluorescent microsatellites markers. Researchers discovered that this population found in Przewalski’s horses in the Xinjiang Province of China had a relatively high level of genetic diversity, mostly within individual populations, indicating frequent gene exchange.
Genetic Diversity Evaluation Methodology
- For this study, the researchers studied the genetic diversity of 192 individuals of Gasterophilus pecorum (a parasite) which were sampled from Przewalski’s horses in the Xinjiang Province of China.
- They used 12 microsatellite loci (or locations on a chromosome) to evaluate the genetic diversity.
- Key parameters of genetic diversity including total gene diversity, effective number of alleles and each observed number of alleles, expected heterozygosity, and Polymorphism Information Content (PIC), were estimated to provide a comprehensive understanding of the genetic diversity level and pattern within these sampled G. pecorum populations.
Key Findings of the Study
- An overall high level of heterozygosity and genetic diversity was found in the studied G. pecorum populations, indicating a high degree of genetic variability within the individuals of the population.
- The average expected heterozygosity (a measure of the genetic variation of the population) was found to be as high as 0.8426, while the Polymorphism Information Content (PIC), an indicator of a genetic marker’s informativeness for linkage analysis, averaged at 0.8119. Both of these numbers suggest a high level of genetic variation and diversity.
- Also, the number of gene migrations per generation among the G. pecorum populations varied from 2.3814 to 85.9745, providing additional proof of frequent gene exchange within the populations.
- An Analysis of Molecular Variance (AMOVA) demonstrated that the majority of the genetic variation in the G. pecorum populations was within the species rather than between different species.
Implications of the Study
- The high level of genetic diversity and frequent gene exchange found in the G. pecorum populations implies a rich genetic adaptability which might be influencing the parasitic strategies of G. pecorum.
- The findings of this research are not only important for understanding the evolutionary forces at play within the G. pecorum populations, but also serve as valuable data for further studies aimed at understanding and controlling the parasitic strategies of G. pecorum.
Cite This Article
APA
Liu SH, Cheng F, Fan X, Li K, Hu D, Ma Y, Li H, Bayinchahan G.
(2018).
Evaluation of the genetic diversity and population structure of Gasterophilus pecorum in Xinjiang Province, China, using fluorescent microsatellites (SSR) markers.
Vet Parasitol, 261, 53-58.
https://doi.org/10.1016/j.vetpar.2018.08.005 Publication
Researcher Affiliations
- Beijing Forestry University, Institute of Nature Reserve, Beijing, 100083, China; Xinjiang Agricultural University, Institute of Animal Medicine, Urumqi, 830052, China; Beijing Language and Culture University, Office of Educational Administration, Beijing, 100083, China. Electronic address: liuhuidaofeng@163.com.
- Beijing Forestry University, Institute of Nature Reserve, Beijing, 100083, China.
- Chinese Association of Zoological Gardens, Beijing, 100037, China.
- Beijing Forestry University, Institute of Nature Reserve, Beijing, 100083, China. Electronic address: Likai_sino@sina.com.
- Beijing Forestry University, Institute of Nature Reserve, Beijing, 100083, China.
- College of Veterinary Medicine, Northeast Agricultural, Heilongjiang, Harbin, 150030, China.
- Animal Husbandry and Veterinary Station of Zhaosu, Xinjiang, Zhaosu, 835600, China.
- Xinjiang Agricultural University, Institute of Animal Medicine, Urumqi, 830052, China. Electronic address: 2514062881@qq.com.
MeSH Terms
- Animals
- China
- Diptera / genetics
- Diptera / growth & development
- Genetic Markers
- Genetic Variation
- Horses / parasitology
- Larva / genetics
- Larva / growth & development
- Microsatellite Repeats
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