Integrated analysis of microRNA and mRNA expressions in peripheral blood leukocytes of Warmblood horses before and after exercise.
Abstract: Exercise capacity is a valuable trait in horses, and it has been used as a horse selection criterion. Although exercise affects molecular homeostasis and adaptation in horses, the mechanisms underlying these effects are not fully described. This study was carried out to identify changes in the blood profiles of microRNAs (miRNAs) and mRNAs induced by exercise in horse leukocytes. Total RNAs isolated from the peripheral blood leukocytes of four Warmblood horses before and after exercise were subjected to next-generation sequencing (NGS) and microarray analyses to determine the miRNA and mRNA expression profiles, respectively. The expressions of 6 miRNAs, including 4 known and 2 novel miRNAs, were altered by exercise. The predicted target genes of the differentially expressed miRNAs identified by NGS were matched to the exercise-induced mRNAs determined by microarray analysis. Five genes (, , , , and ) from the microarray analysis were matched to the predicted target genes of the 6 miRNAs. The subset of mRNAs and miRNAs affected by exercise in peripheral blood leukocytes may be useful in elucidating the molecular mechanisms of exercise-associated physiology in horses.
Publication Date: 2017-09-21 PubMed ID: 28927254PubMed Central: PMC5799405DOI: 10.4142/jvs.2018.19.1.99Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Journal Article
Summary
This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.
The research article discusses a study to identify the changes in blood cells related to microRNA (miRNA) and mRNA induced by exercise in Warmblood horses, which can potentially reveal the molecular mechanisms of exercise-associated physiology in horses.
Objective of the Study
- The primary aim of the study was to gain a better understanding of how exercise affects molecular homeostasis and adaptation in horses. It sought to identify changes in the blood profiles of miRNAs and mRNAs induced by exercise in horse leukocytes.
Methodology of the Study
- The researchers conducted their study on Warmblood horses, renowned for their capabilities in equestrian sports. They isolated total RNAs from the peripheral blood leukocytes of four Warmblood horses both before and after exercise.
- They used next-generation sequencing (NGS) and microarray analyses to discern both the miRNA and mRNA expression profiles, respectively, in these cells.
Findings of the Study
- The study revealed that exercise altered the expression of 6 miRNAs. Of these, four were known miRNAs, and two were newly discovered in the course of this study.
- The researchers identified the potential target genes of these differentially expressed miRNAs using NGS. To determine the mRNA patterns induced by exercise, the researchers used microarray analysis.
- Five genes from this microarray analysis matched the predicted target genes of the six miRNAs identified in the study, thus linking the altered expression of these miRNAs to exercise.
- The results of this study could help in understanding and possibly modifying the molecular adjustments in a horse’s body due to exercise.
Significance of the Study
- The findings of this study increase our understanding of the physiological changes induced by exercise at the molecular level in horses. This could prove useful in developing strategies to maximize the performance and improve the health of horses through targeted exercise regimes.
Limitations of the Study
- With the research conducted on a small sample of only four Warmblood horses, the findings need to be replicated on a larger scale before generalized conclusions can be drawn.
Cite This Article
APA
Kim HA, Kim MC, Kim NY, Ryu DY, Lee HS, Kim Y.
(2017).
Integrated analysis of microRNA and mRNA expressions in peripheral blood leukocytes of Warmblood horses before and after exercise.
J Vet Sci, 19(1), 99-106.
https://doi.org/10.4142/jvs.2018.19.1.99 Publication
Researcher Affiliations
- Laboratory of Veterinary Clinical Pathology, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- BK21 PLUS Program for Creative Veterinary Science Research, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- Laboratory of Veterinary Clinical Pathology, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- BK21 PLUS Program for Creative Veterinary Science Research, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- Laboratory of Veterinary Clinical Pathology, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- BK21 PLUS Program for Creative Veterinary Science Research, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- Laboratory of Environmental Health and Biomarkers, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- Laboratory of Veterinary Clinical Pathology, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- BK21 PLUS Program for Creative Veterinary Science Research, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- Laboratory of Veterinary Clinical Pathology, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
- Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.
MeSH Terms
- Animals
- Horses / genetics
- Horses / metabolism
- Leukocytes / metabolism
- MicroRNAs / genetics
- MicroRNAs / metabolism
- RNA, Messenger / genetics
- RNA, Messenger / metabolism
- Transcriptome
Conflict of Interest Statement
The authors declare no conflicts of interest.
References
This article includes 38 references
- Aschenbach WG, Ho RC, Sakamoto K, Fujii N, Li Y, Kim YB, Hirshman MF, Goodyear LJ. Regulation of dishevelled and beta-catenin in rat skeletal muscle: an alternative exercise-induced GSK-3beta signaling pathway.. Am J Physiol Endocrinol Metab 2006 Jul;291(1):E152-8.
- Barrey E. Reviewe: Genetics and genomics in equine exercise physiology: an overview of the new applications of molecular biology as positive and negative markers of performance and health.. Equine Vet J Suppl 2010 Nov;(38):561-8.
- Barrey E, Mucher E, Robert C, Amiot F, Gidrol X. Gene expression profiling in blood cells of endurance horses completing competition or disqualified due to metabolic disorder.. Equine Vet J Suppl 2006 Aug;(36):43-9.
- Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing.. J R Stat Soc Series B Stat Methodol 1995;57:289–300.
- Calderone A, Murphy RJ, Lavoie J, Colombo F, Béliveau L. TGF-beta(1) and prepro-ANP mRNAs are differentially regulated in exercise-induced cardiac hypertrophy.. J Appl Physiol (1985) 2001 Aug;91(2):771-6.
- Clarkson PM, Devaney JM, Gordish-Dressman H, Thompson PD, Hubal MJ, Urso M, Price TB, Angelopoulos TJ, Gordon PM, Moyna NM, Pescatello LS, Visich PS, Zoeller RF, Seip RL, Hoffman EP. ACTN3 genotype is associated with increases in muscle strength in response to resistance training in women.. J Appl Physiol (1985) 2005 Jul;99(1):154-63.
- Dey S, Singh RH, Dey PK. Exercise training: significance of regional alterations in serotonin metabolism of rat brain in relation to antidepressant effect of exercise.. Physiol Behav 1992 Dec;52(6):1095-9.
- Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, Servant N, Keime C, Marot G, Castel D, Estelle J, Guernec G, Jagla B, Jouneau L, Laloë D, Le Gall C, Schaëffer B, Le Crom S, Guedj M, Jaffrézic F. A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis.. Brief Bioinform 2013 Nov;14(6):671-83.
- Ding Q, Vaynman S, Akhavan M, Ying Z, Gomez-Pinilla F. Insulin-like growth factor I interfaces with brain-derived neurotrophic factor-mediated synaptic plasticity to modulate aspects of exercise-induced cognitive function.. Neuroscience 2006 Jul 7;140(3):823-33.
- Fink L, Hölschermann H, Kwapiszewska G, Muyal JP, Lengemann B, Bohle RM, Santoso S. Characterization of platelet-specific mRNA by real-time PCR after laser-assisted microdissection.. Thromb Haemost 2003 Oct;90(4):749-56.
- Flynt AS, Lai EC. Biological principles of microRNA-mediated regulation: shared themes amid diversity.. Nat Rev Genet 2008 Nov;9(11):831-42.
- Gaffney B, Cunningham EP. Estimation of genetic trend in racing performance of thoroughbred horses.. Nature 1988 Apr 21;332(6166):722-4.
- Gim JA, Ayarpadikannan S, Eo J, Kwon YJ, Choi Y, Lee HK, Park KD, Yang YM, Cho BW, Kim HS. Transcriptional expression changes of glucose metabolism genes after exercise in thoroughbred horses.. Gene 2014 Aug 15;547(1):152-8.
- Gu J, Orr N, Park SD, Katz LM, Sulimova G, MacHugh DE, Hill EW. A genome scan for positive selection in thoroughbred horses.. PLoS One 2009 Jun 2;4(6):e5767.
- Heinemeier K, Langberg H, Olesen JL, Kjaer M. Role of TGF-beta1 in relation to exercise-induced type I collagen synthesis in human tendinous tissue.. J Appl Physiol (1985) 2003 Dec;95(6):2390-7.
- Hill EW, Katz LM, MacHugh DE. Genomics of performance.. In: Chowdhary BP, editor. Equine Genomics. Oxford: Blackwell Publishing; 2013. pp. 265–283.
- Kim MC, Lee SW, Ryu DY, Cui FJ, Bhak J, Kim Y. Identification and characterization of microRNAs in normal equine tissues by Next Generation Sequencing.. PLoS One 2014;9(4):e93662.
- Kulikova MA, Maliuchenko NV, Timofeeva MA, Shleptsova VA, Tschegol'kova IuA, Vediakov AM, Tonevitskiĭ AG. [Polymorphisms of the main genes of neurotransmitter systems: I. the dopaminergic system].. Fiziol Cheloveka 2007 Nov-Dec;33(6):105-12.
- Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.. Genome Biol 2009;10(3):R25.
- Lee S, Hwang S, Yu HJ, Oh D, Choi YJ, Kim MC, Kim Y, Ryu DY. Expression of microRNAs in Horse Plasma and Their Characteristic Nucleotide Composition.. PLoS One 2016;11(1):e0146374.
- Levine MA. Investigating the origins of horse domestication.. Equine Vet J Suppl 1999 Apr;(28):6-14.
- Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program.. Bioinformatics 2008 Mar 1;24(5):713-4.
- Ma Z, Qi J, Meng S, Wen B, Zhang J. Swimming exercise training-induced left ventricular hypertrophy involves microRNAs and synergistic regulation of the PI3K/AKT/mTOR signaling pathway.. Eur J Appl Physiol 2013 Oct;113(10):2473-86.
- Maxwell PH, Dachs GU, Gleadle JM, Nicholls LG, Harris AL, Stratford IJ, Hankinson O, Pugh CW, Ratcliffe PJ. Hypoxia-inducible factor-1 modulates gene expression in solid tumors and influences both angiogenesis and tumor growth.. Proc Natl Acad Sci U S A 1997 Jul 22;94(15):8104-9.
- McCue ME, Valberg SJ, Lucio M, Mickelson JR. Glycogen synthase 1 (GYS1) mutation in diverse breeds with polysaccharide storage myopathy.. J Vet Intern Med 2008 Sep-Oct;22(5):1228-33.
- McGivney BA, Eivers SS, MacHugh DE, MacLeod JN, O'Gorman GM, Park SD, Katz LM, Hill EW. Transcriptional adaptations following exercise in thoroughbred horse skeletal muscle highlights molecular mechanisms that lead to muscle hypertrophy.. BMC Genomics 2009 Dec 30;10:638.
- Mounier R, Pialoux V, Cayre A, Schmitt L, Richalet JP, Robach P, Lasne F, Roels B, Millet G, Coudert J, Clottes E, Fellmann N. Leukocyte's Hif-1 expression and training-induced erythropoietic response in swimmers.. Med Sci Sports Exerc 2006 Aug;38(8):1410-7.
- Mounier R, Pialoux V, Roels B, Thomas C, Millet G, Mercier J, Coudert J, Fellmann N, Clottes E. Effect of intermittent hypoxic training on HIF gene expression in human skeletal muscle and leukocytes.. Eur J Appl Physiol 2009 Mar;105(4):515-24.
- Murphy BA, Wagner AL, McGlynn OF, Kharazyan F, Browne JA, Elliott JA. Exercise influences circadian gene expression in equine skeletal muscle.. Vet J 2014 Jul;201(1):39-45.
- Norman B, Sabina RL, Jansson E. Regulation of skeletal muscle ATP catabolism by AMPD1 genotype during sprint exercise in asymptomatic subjects.. J Appl Physiol (1985) 2001 Jul;91(1):258-64.
- Park KD, Park J, Ko J, Kim BC, Kim HS, Ahn K, Do KT, Choi H, Kim HM, Song S, Lee S, Jho S, Kong HS, Yang YM, Jhun BH, Kim C, Kim TH, Hwang S, Bhak J, Lee HK, Cho BW. Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq.. BMC Genomics 2012 Sep 12;13:473.
- Radom-Aizik S, Zaldivar F, Haddad F, Cooper DM. Impact of brief exercise on peripheral blood NK cell gene and microRNA expression in young adults.. J Appl Physiol (1985) 2013 Mar 1;114(5):628-36.
- Radom-Aizik S, Zaldivar F Jr, Leu SY, Adams GR, Oliver S, Cooper DM. Effects of exercise on microRNA expression in young males peripheral blood mononuclear cells.. Clin Transl Sci 2012 Feb;5(1):32-8.
- Russell AP. Molecular regulation of skeletal muscle mass.. Clin Exp Pharmacol Physiol 2010 Mar;37(3):378-84.
- Schröder W, Klostermann A, Distl O. Candidate genes for physical performance in the horse.. Vet J 2011 Oct;190(1):39-48.
- Tonevitsky AG, Maltseva DV, Abbasi A, Samatov TR, Sakharov DA, Shkurnikov MU, Lebedev AE, Galatenko VV, Grigoriev AI, Northoff H. Dynamically regulated miRNA-mRNA networks revealed by exercise.. BMC Physiol 2013 Jun 7;13:9.
- Walmsley SR, Print C, Farahi N, Peyssonnaux C, Johnson RS, Cramer T, Sobolewski A, Condliffe AM, Cowburn AS, Johnson N, Chilvers ER. Hypoxia-induced neutrophil survival is mediated by HIF-1alpha-dependent NF-kappaB activity.. J Exp Med 2005 Jan 3;201(1):105-15.
- Yeh SH, Chuang H, Lin LW, Hsiao CY, Eng HL. Regular tai chi chuan exercise enhances functional mobility and CD4CD25 regulatory T cells.. Br J Sports Med 2006 Mar;40(3):239-43.
Citations
This article has been cited 6 times.- Lee S, Baker ME, Clinton M, Taylor SE. Use of Omics Data in Fracture Prediction; a Scoping and Systematic Review in Horses and Humans. Animals (Basel) 2021 Mar 30;11(4).
- Sun T, Huang GY, Wang ZH, Teng SH, Cao YH, Sun JL, Hanif Q, Chen NB, Lei CZ, Liao YY. Selection signatures of Fuzhong Buffalo based on whole-genome sequences. BMC Genomics 2020 Sep 29;21(1):674.
- Ropka-Molik K, Stefaniuk-Szmukier M, Musiał AD, Velie BD. The Genetics of Racing Performance in Arabian Horses. Int J Genomics 2019;2019:9013239.
- Kim SW, Jo A, Im J, Lee HE, Kim HS. Expression analysis of miR-221-3p and its target genes in horses. Genes Genomics 2019 Apr;41(4):459-465.
- Sisia G, Giudice E, Attanzio A, Briglia M, Piccione G, Trunfio C, Arfuso F. Exosome and miRNA Content Engagement in the Physical Exercise Response: What Is Known to Date in Atheltic Horses?. Int J Mol Sci 2026 Jan 4;27(1).
- Cullen JN, Cieslak J, Petersen JL, Bellone RR, Finno CJ, Kalbfleisch TS, Calloe K, Capomaccio S, Cappelli K, Coleman SJ, Distl O, Durward-Akhurst SA, Giulotto E, Hamilton NA, Hill EW, Katz LM, Klaerke DA, Lindgren G, MacHugh DE, Mackowski M, MacLeod JN, Metzger J, Murphy BA, Orlando L, Raudsepp T, Silvestrelli M, Strand E, Tozaki T, Trachsel DS, Valderrama Figueroa LS, Velie BD, Wade CM, Waud B, Mickelson JR, McCue ME. Charting the equine miRNA landscape: An integrated pipeline and browser for annotating, quantifying, and visualizing expression. PLoS Genet 2025 Sep;21(9):e1011835.
Use Nutrition Calculator
Check if your horse's diet meets their nutrition requirements with our easy-to-use tool Check your horse's diet with our easy-to-use tool
Talk to a Nutritionist
Discuss your horse's feeding plan with our experts over a free phone consultation Discuss your horse's diet over a phone consultation
Submit Diet Evaluation
Get a customized feeding plan for your horse formulated by our equine nutritionists Get a custom feeding plan formulated by our nutritionists