Lectin Microarray-based Glycomics and Machine Learning Identify Shared Osteoarthritis Biomarkers in Humans, Dogs, and Horses.
Abstract: Post-traumatic osteoarthritis (PTOA) is a common sequela to joint injury in both humans and companion animal species such as horses and dogs. Despite the increasing prevalence of osteoarthritis (OA) in humans, investigation of glycosylation changes associated with OA remains in its infancy. Recent advances, such as lectin microarray analysis, now enable detailed glycan profiling in complex biofluids such as synovial fluid. Using lectin microarray technology, this study characterized glycosylation patterns in synovial fluid samples from healthy and OA-affected joints in horses, dogs, and humans. Comparative glycan-binding profiles within and between species revealed conserved and distinct glycomic signatures associated with OA. Machine learning models, including classification algorithms, effectively distinguished OA from healthy joints, identifying key lectins and glycan epitopes crucial to these predictions. The identified lectin markers reflect specific glycosylation pathways and potential inflammatory mechanisms, demonstrating their value in differentiating between healthy and OA phenotypes. Our findings underscore the promise of integrated glycomic profiling and machine learning to enhance our understanding of glycan involvement in the pathogenesis of OA and to facilitate the development of diagnostic and therapeutic strategies applicable to both veterinary and human medicine.
Publication Date: 2025-10-17 PubMed ID: 41279656PubMed Central: PMC12632833DOI: 10.1101/2025.10.16.682971Google Scholar: Lookup
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Summary
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Overview
- This study uses lectin microarray technology and machine learning to identify shared biomarkers of osteoarthritis (OA) in synovial fluid from humans, dogs, and horses.
- It highlights conserved changes in glycosylation associated with OA across these species, offering insights for diagnosis and treatment.
Background
- Osteoarthritis (OA): A degenerative joint disease often following injury, known as post-traumatic osteoarthritis (PTOA), affecting humans and companion animals such as horses and dogs.
- Current challenges: Although OA prevalence is increasing, investigations into glycosylation changes (modifications in sugar chains on proteins) associated with OA are limited.
- Glycosylation: Plays a critical role in cell signaling, inflammation, and joint health, making it a potential biomarker source.
Technology and Methods
- Lectin microarray: A tool that uses multiple lectins—proteins that bind specific sugar motifs—to profile glycans in complex biological samples like synovial fluid.
- Sample analysis: Synovial fluid collected from healthy and OA-affected joints of humans, dogs, and horses was analyzed via lectin microarrays to detect glycosylation patterns.
- Comparative approach: Glycan-binding profiles were compared within each species and across the three species to identify conserved (shared) and distinct glycomic signatures linked to OA.
- Machine learning integration: Predictive models, including classification algorithms, were employed to distinguish OA samples from healthy ones, helping to validate and identify important glycan markers.
Key Findings
- Conserved glycomic signatures: Certain glycosylation changes related to OA were conserved across humans, dogs, and horses, suggesting common underlying pathological mechanisms.
- Differential glycosylation: Specific lectins showed different binding patterns between healthy and OA joints, pointing to altered glycosylation pathways during disease.
- Machine learning success: Algorithms effectively classified OA versus healthy samples, pinpointing key lectins and glycan epitopes crucial for this discrimination.
- Biological implications: Identified markers relate to glycosylation and inflammatory pathways, implicating these processes in OA pathogenesis.
Significance and Applications
- Cross-species insights: Understanding shared biomarkers supports the use of animal models for studying human OA, facilitating translational research.
- Diagnostic potential: Glycomic markers identified could lead to improved, non-invasive diagnostic tests to detect early or progressing OA.
- Therapeutic development: Revealing glycosylation changes involved in OA offers targets for developing novel treatments aimed at modulating these pathways.
- Integrative approach: Combining glycomic profiling with advanced analytics like machine learning offers a powerful framework for biomarker discovery in complex diseases.
Cite This Article
APA
Peralta AG, Raeisimakiani P, Hayashi K, Mahal LK, Reesink HL.
(2025).
Lectin Microarray-based Glycomics and Machine Learning Identify Shared Osteoarthritis Biomarkers in Humans, Dogs, and Horses.
bioRxiv, 2025.10.16.682971.
https://doi.org/10.1101/2025.10.16.682971 Publication
Researcher Affiliations
- Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California, Davis, Davis CA 95616 USA.
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2 Canada.
- Department of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca NY 14853 USA.
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2 Canada.
- Department of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California, Davis, Davis CA 95616 USA.
- Department of Clinical Sciences, College of Veterinary Medicine, Cornell University, Ithaca NY 14853 USA.
Grant Funding
- R24 GM082910 / NIGMS NIH HHS
- UL1 TR002384 / NCATS NIH HHS
Conflict of Interest Statement
Conflicts of Interest The authors declare that they have no conflicts of interests with the contents of this article.
References
This article includes 132 references
- Nguyen A, Lee P, Rodriguez E K, Chahal K, Freedman B R, Nazarian A. Addressing the growing burden of musculoskeletal diseases in the ageing US population: challenges and innovations.. Lancet Healthy Longev 6, 100707.
- Maia C R, Annichino R F, de Azevedo E Souza Munhoz M, Machado E G, Marchi E, Castano-Betancourt M C. Post-traumatic osteoarthritis: the worst associated injuries and differences in patients’ profile when compared with primary osteoarthritis.. BMC Musculoskelet Disord 24, 568.
- Lawrence R C, Felson D T, Helmick C G, Arnold L M, Choi H, Deyo R A, Gabriel S, Hirsch R, Hochberg M C, Hunder G G, Jordan J M, Katz J N, Kremers H M, Wolfe F, National Arthritis Data Workgroup. Estimates of the prevalence of arthritis and other rheumatic conditions in the United States. Part II.. Arthritis Rheum 58, 26–35.
- Anderson K L, O’Neill D G, Brodbelt D C, Church D B, Meeson R L, Sargan D, Summers J F, Zulch H, Collins L M. Prevalence, duration and risk factors for appendicular osteoarthritis in a UK dog population under primary veterinary care.. Sci Rep 8, 5641.
- Baccarin R Y A, Seidel S R T, Michelacci Y M, Tokawa P K A, Oliveira T M. Osteoarthritis: a common disease that should be avoided in the athletic horse’s life.. Anim Front 12, 25–36.
- Kosinska M K, Mastbergen S C, Liebisch G, Wilhelm J, Dettmeyer R B, Ishaque B, Rickert M, Schmitz G, Lafeber F P, Steinmeyer J. Comparative lipidomic analysis of synovial fluid in human and canine osteoarthritis.. Osteoarthritis Cartilage 24, 1470–1478.
- Pelletier J P, Martel-Pelletier J, Abramson S B. Osteoarthritis, an inflammatory disease: potential implication for the selection of new therapeutic targets.. Arthritis Rheum 44, 1237–1247.
- Han M, Dai J, Zhang Y, Lin Q, Jiang M, Xu X, Liu Q. Identification of Osteoarthritis Biomarkers by Proteomic Analysis of Synovial Fluid.. Journal of International Medical Research .
- McIlwraith C W, Kawcak C E, Frisbie D D, Little C B, Clegg P D, Peffers M J, Karsdal M A, Ekman S, Laverty S, Slayden R A, Sandell L J, Lohmander L S, Kraus V B. Biomarkers for equine joint injury and osteoarthritis.. J Orthop Res 36, 823–831.
- Vincent T L. OA synovial fluid: biological insights into a whole-joint disease.. Osteoarthritis Cartilage 30, 765–766.
- Carlson A K, Rawle R A, Wallace C W, Brooks E G, Adams E, Greenwood M C, Olmer M, Lotz M K, Bothner B, June R K. Characterization of synovial fluid metabolomic phenotypes of cartilage morphological changes associated with osteoarthritis.. Osteoarthritis Cartilage 27, 1174–1184.
- Mickiewicz B, Kelly J J, Ludwig T E, Weljie A M, Preston Wiley J, Schmidt T A, Vogel H J. Metabolic analysis of knee synovial fluid as a potential diagnostic approach for osteoarthritis.. Journal of Orthopaedic Research 33, 1631–1638.
- Noordwijk K J, Qin R, Diaz-Rubio M E, Zhang S, Su J, Mahal L K, Reesink H L. Metabolism and global protein glycosylation are differentially expressed in healthy and osteoarthritic equine carpal synovial fluid.. Equine Vet J 54, 323–333.
- Anderson J R, Phelan M M, Caamaño-Gutiérrez E, Clegg P D, Rubio-Martinez L M, Peffers M J. Metabolomic and proteomic stratification of equine osteoarthritis.. Equine Vet J 57, 1204–1218.
- Altindag O, Erel O, Aksoy N, Selek S, Celik H, Karaoglanoglu M. Increased oxidative stress and its relation with collagen metabolism in knee osteoarthritis.. Rheumatol Int 27, 339–344.
- Anderson JR, Chokesuwattanaskul S, Phelan MM, Welting TJM, Lian L-Y, Peffers MJ, Wright HL. H NMR Metabolomics Identifies Underlying Inflammatory Pathology in Osteoarthritis and Rheumatoid Arthritis Synovial Joints. J Proteome Res 17, 3780–3790.
- Varki A. Biological roles of glycans. Glycobiology 27, 3–49.
- Reily C, Stewart TJ, Renfrow MB, Novak J. Glycosylation in health and disease. Nat Rev Nephrol 15, 346–366.
- Novokmet M, Lukić E, Vučković F, Ðurić Ž, Keser T, Rajšl K, Remondini D, Castellani G, Gašparović H, Gornik O, Lauc G. Changes in IgG and total plasma protein glycomes in acute systemic inflammation. Sci Rep 4, 4347.
- Mohideen FI, Mahal LK. Infection and the Glycome─New Insights into Host Response. ACS Infect Dis 10, 2540–2550.
- Turnbull JE, Field RA. Emerging glycomics technologies. Nat Chem Biol 3, 74–77.
- Chen S, Qin R, Mahal LK. Sweet systems: technologies for glycomic analysis and their integration into systems biology. Crit Rev Biochem Mol Biol 56, 301–320.
- Trbojević-Akmačić I, Lageveen-Kammeijer GSM, Heijs B, Petrović T, Deriš H, Wuhrer M, Lauc G. High-Throughput Glycomic Methods. Chem Rev 122, 15865–15913.
- Tiemeyer M, Aoki K, Paulson J, Cummings RD, York WS, Karlsson NG, Lisacek F, Packer NH, Campbell MP, Aoki NP, Fujita A, Matsubara M, Shinmachi D, Tsuchiya S, Yamada I, Pierce M, Ranzinger R, Narimatsu H, Aoki-Kinoshita KF. GlyTouCan: an accessible glycan structure repository. Glycobiology 27, 915–919.
- Smith DF, Song X, Cummings RD. Use of glycan microarrays to explore specificity of glycan-binding proteins. Methods Enzymol 480, 417–444.
- Pilobello KT, Krishnamoorthy L, Slawek D, Mahal LK. Development of a lectin microarray for the rapid analysis of protein glycopatterns. Chembiochem 6, 985–989.
- Bojar D, Lisacek F. Glycoinformatics in the Artificial Intelligence Era. Chem Rev 122, 15971–15988.
- Sevim Bayrak C, Forst CV, Jones DR, Gresham DJ, Pushalkar S, Wu S, Vogel C, Mahal LK, Ghedin E, Ross T, García-Sastre A, Zhang B. Patient subtyping analysis of baseline multi-omic data reveals distinct pre-immune states associated with antibody response to seasonal influenza vaccination. Clin Immunol 266, 110333.
- Ng S, Masarone S, Watson D, Barnes MR. The benefits and pitfalls of machine learning for biomarker discovery. Cell Tissue Res 394, 17–31.
- Mariethoz J, Khatib K, Alocci D, Campbell MP, Karlsson NG, Packer NH, Mullen EH, Lisacek F. SugarBindDB, a resource of glycan-mediated host-pathogen interactions. Nucleic Acids Res 44, D1243–50.
- Deng X, Liu X, Zhang Y, Ke D, Yan R, Wang Q, Tian X, Li M, Zeng X, Hu C. Changes of serum IgG glycosylation patterns in rheumatoid arthritis. Clin Proteomics 20, 7.
- Kissel T, Toes REM, Huizinga TWJ, Wuhrer M. Glycobiology of rheumatic diseases. Nat Rev Rheumatol 19, 28–43.
- Xu X, Balmer L, Chen Z, Mahara G, Lin L. The role of IgG N-galactosylation in spondyloarthritis. Transl. Metab. Syndr. Res. 5, 16–23.
- Bhattacharjee M, Sharma R, Goel R, Balakrishnan L, Renuse S, Advani J, Gupta ST, Verma R, Pinto SM, Sekhar NR, Nair B, Prasad TSK, Harsha HC, Jois R, Shankar S, Pandey A. A multilectin affinity approach for comparative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy. Clin Proteomics 10, 11.
- Kraus VB, Hsueh M-F. Molecular biomarker approaches to prevention of post-traumatic osteoarthritis. Nat Rev Rheumatol 20, 272–289.
- O’Sullivan O, Ladlow P, Steiner K, Hillman C, Stocks J, Bennett AN, Valdes AM, Kluzek S. Current status of catabolic, anabolic and inflammatory biomarkers associated with structural and symptomatic changes in the chronic phase of post-traumatic knee osteoarthritis- a systematic review. Osteoarthr Cartil Open 5, 100412.
- Takase K, McCulloch PC, Yik JHN, Haudenschild DR. Clinical and molecular landscape of post-traumatic osteoarthritis. Connect Tissue Res 1–7.
- Yu H, Li M, Shu J, Dang L, Wu X, Wang Y, Wang X, Chang X, Bao X, Zhu B, Ren X, Chen W, Li Y. Characterization of aberrant glycosylation associated with osteoarthritis based on integrated glycomics methods. Arthritis Res Ther 25, 102.
- Liu H-Z, Song X-Q, Zhang H. Sugar-coated bullets: Unveiling the enigmatic mystery “sweet arsenal” in osteoarthritis. Heliyon 10, e27624.
- Fuehrer J, Pichler KM, Fischer A, Giurea A, Weinmann D, Altmann F, Windhager R, Gabius H-J, Toegel S. N-Glycan profiling of chondrocytes and fibroblast-like synoviocytes: Towards functional glycomics in osteoarthritis. Proteomics Clin Appl 15, e2000057.
- Luo Y, Wu Z, Chen S, Luo H, Mo X, Wang Y, Tang J. Protein N-glycosylation aberrations and glycoproteomic network alterations in osteoarthritis and osteoarthritis with type 2 diabetes. Sci Rep 12, 6977.
- Heindel DW, Koppolu S, Zhang Y, Kasper B, Meche L, Vaiana CA, Bissel SJ, Carter CE, Kelvin AA, Elaish M, Lopez-Orozco J, Zhang B, Zhou B, Chou T-W, Lashua L, Hobman TC, Ross TM, Ghedin E, Mahal LK. Glycomic analysis of host response reveals high mannose as a key mediator of influenza severity. Proc Natl Acad Sci U S A 117, 26926–26935.
- Heindel DW, Chen S, Aziz PV, Chung JY, Marth JD, Mahal LK. Glycomic Analysis Reveals a Conserved Response to Bacterial Sepsis Induced by Different Bacterial Pathogens. ACS Infect Dis 8, 1075–1085.
- Kurz E, Chen S, Vucic E, Baptiste G, Loomis C, Agrawal P, Hajdu C, Bar-Sagi D, Mahal LK. Integrated Systems Analysis of the Murine and Human Pancreatic Cancer Glycomes Reveals a Tumor-Promoting Role for ST6GAL1. Mol Cell Proteomics 20, 100160.
- Pilobello KT, Slawek DE, Mahal LK. A ratiometric lectin microarray approach to analysis of the dynamic mammalian glycome. Proceedings of the National Academy of Sciences 104, 11534–11539.
- York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo K-H, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C. MIRAGE: the minimum information required for a glycomics experiment. Glycobiology 24, 402–406.
- Tateno H, Mahal LK, Feizi T, Kettner C, Paulson JC. The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting lectin microarray data. Glycobiology 35.
- Srivastava S, Verhagen A, Sasmal A, Wasik BR, Diaz S, Yu H, Bensing BA, Khan N, Khedri Z, Secrest P, Sullam P, Varki N, Chen X, Parrish CR, Varki A. Development and applications of sialoglycan-recognizing probes (SGRPs) with defined specificities: exploring the dynamic mammalian sialoglycome. Glycobiology 32, 1116–1136.
- Bensing BA, Li Q, Park D, Lebrilla CB, Sullam PM. Streptococcal Siglec-like adhesins recognize different subsets of human plasma glycoproteins: implications for infective endocarditis. Glycobiology 28, 601–611.
- Bensing BA, Khedri Z, Deng L, Yu H, Prakobphol A, Fisher SJ, Chen X, Iverson TM, Varki A, Sullam PM. Novel aspects of sialoglycan recognition by the Siglec-like domains of streptococcal SRR glycoproteins. Glycobiology 26, 1222–1234.
- Zhu W, Zhou Y, Guo L, Feng S. Biological function of sialic acid and sialylation in human health and disease. Cell Death Discov 10, 415.
- Li Y, Chen X. Sialic acid metabolism and sialyltransferases: natural functions and applications. Appl Microbiol Biotechnol 94, 887–905.
- Varki A. Sialic acids in human health and disease. Trends Mol Med 14, 351–360.
- Lee H, Lee A, Seo N, Oh J, Kweon O-K, An HJ, Kim J. Discovery of N-glycan Biomarkers for the Canine Osteoarthritis. Life (Basel) 10.
- Svala E, Jin C, Rüetschi U, Ekman S, Lindahl A, Karlsson NG, Skiöldebrand E. Characterisation of lubricin in synovial fluid from horses with osteoarthritis. Equine Vet J 49, 116–123.
- Shibuya N, Goldstein IJ, Broekaert WF, Nsimba-Lubaki M, Peeters B, Peumans WJ. The elderberry (Sambucus nigra L.) bark lectin recognizes the Neu5Ac(alpha 2–6)Gal/GalNAc sequence. J Biol Chem 262, 1596–1601.
- Geisler C, Jarvis DL. Effective glycoanalysis with Maackia amurensis lectins requires a clear understanding of their binding specificities. Glycobiology 21, 988–993.
- Qin R, Kurz E, Chen S, Zeck B, Chiribogas L, Jackson D, Herchen A, Attia T, Carlock M, Rapkiewicz A, Bar-Sagi D, Ritchie B, Ross TM, Mahal LK. α2,6-Sialylation Is Upregulated in Severe COVID-19, Implicating the Complement Cascade. ACS Infect Dis 8, 2348–2361.
- Wang X, Inoue S, Gu J, Miyoshi E, Noda K, Li W, Mizuno-Horikawa Y, Nakano M, Asahi M, Takahashi M, Uozumi N, Ihara S, Lee SH, Ikeda Y, Yamaguchi Y, Aze Y, Tomiyama Y, Fujii J, Suzuki K, Kondo A, Shapiro SD, Lopez-Otin C, Kuwaki T, Okabe M, Honke K, Taniguchi N. Dysregulation of TGF-beta1 receptor activation leads to abnormal lung development and emphysema-like phenotype in core fucose-deficient mice. Proc Natl Acad Sci U S A 102, 15791–15796.
- Wilson JR, Williams D, Schachter H. The control of glycoprotein synthesis: N-acetylglucosamine linkage to a mannose residue as a signal for the attachment of L-fucose to the asparagine-linked N-acetylglucosamine residue of glycopeptide from alpha1-acid glycoprotein. Biochem Biophys Res Commun 72, 909–916.
- Wang Y, Yuan R, Liang B, Zhang J, Wen Q, Chen H, Tian Y, Wen L, Zhou H. A “One-Step” Strategy for the Global Characterization of Core-Fucosylated Glycoproteome. JACS Au 4, 2005–2018.
- Zhang N-Z, Zhao L-F, Zhang Q, Fang H, Song W-L, Li W-Z, Ge Y-S, Gao P. Core fucosylation and its roles in gastrointestinal glycoimmunology. World J Gastrointest Oncol 15, 1119–1134.
- García-García A, Serna S, Yang Z, Delso I, Taleb V, Hicks T, Artschwager R, Vakhrushev SY, Clausen H, Angulo J, Corzana F, Reichardt NC, Hurtado-Guerrero R. FUT8-Directed Core Fucosylation of N-glycans Is Regulated by the Glycan Structure and Protein Environment. ACS Catal 11, 9052–9065.
- Howard IK, Sage HJ, Stein MD, Young NM, Leon MA, Dyckes DF. Studies on a phytohemagglutinin from the lentil. II. Multiple forms of Lens culinaris hemagglutinin. J Biol Chem 246, 1590–1595.
- Kochibe N, Furukawa K. Purification and properties of a novel fucose-specific hemagglutinin of Aleuria aurantia. Biochemistry 19, 2841–2846.
- Brockhausen I., Schachter H., and Stanley P. (2009) in Essentials of Glycobiology (Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY)).
- Ali L, Flowers S A, Jin C, Bennet E P, Ekwall A-K H, Karlsson N G. The O-glycomap of lubricin, a novel mucin responsible for joint lubrication, identified by site-specific glycopeptide analysis. Mol Cell Proteomics 2014 13, 3396–3409.
- Boushehri S, Holey H, Brosz M, Gumbsch P, Pastewka L, Aponte-Santamaría C, Gräter F. O-glycans Expand Lubricin and Attenuate Its Viscosity and Shear Thinning. Biomacromolecules 2024 25, 3893–3908.
- Afshari A R, Chang V, Thomsson K A, Höglund J, Browne E N, Karadzhov G, Mahoney K E, Lucas T M, Rangel-Angarita V, Ryberg H, Gidwani K, Pettersson K, Rolfson O, Björkman L I, Eisler T, Schmidt T A, Jay G D, Malaker S A, Karlsson N G. Glycoproteoforms of Osteoarthritis-associated Lubricin in Plasma and Synovial Fluid. Mol Cell Proteomics 2025 24, 100923.
- Jay G D, Harris D A, Cha C J. Boundary lubrication by lubricin is mediated by O-linked beta(1–3)Gal-GalNAc oligosaccharides. Glycoconj J 2001 18, 807–815.
- Wang Y, Gludish D W, Hayashi K, Todhunter R J, Krotscheck U, Johnson P J, Cummings B P, Su J, Reesink H L. Synovial fluid lubricin increases in spontaneous canine cruciate ligament rupture. Sci Rep 2020 10, 16725.
- Bausch J N, Poretz R D. Purification and properties of the hemagglutinin from Maclura pomifera seeds. Biochemistry 1977 16, 5790–5794.
- Kabir S, Daar A S. The composition and properties of jacalin, a lectin of diverse applications obtained from the jackfruit (Artocarpus heterophyllus) seeds. Immunol Invest 1994 23, 167–188.
- Bojar D, Meche L, Meng G, Eng W, Smith D F, Cummings R D, Mahal L K. A Useful Guide to Lectin Binding: Machine-Learning Directed Annotation of 57 Unique Lectin Specificities. ACS Chem Biol 2022 17, 2993–3012.
- Watkins A R, Reesink H L. Lubricin in experimental and naturally occurring osteoarthritis: a systematic review. Osteoarthritis Cartilage 2020 28, 1303–1315.
- Neu C P, Reddi A H, Komvopoulos K, Schmid T M, Di Cesare P E. Increased friction coefficient and superficial zone protein expression in patients with advanced osteoarthritis. Arthritis Rheum 2010 62, 2680–2687.
- Maki Y, Otani Y, Okamoto R, Izumi M, Kajihara Y. Isolation and characterization of high-mannose type glycans containing five or six mannose residues from hen egg yolk. Carbohydr Res 2022 521, 108680.
- Ščupáková K, Adelaja O T, Balluff B, Ayyappan V, Tressler C M, Jenkinson N M, Claes B, Bowman A P Sr, Cimino-Mathews A M, White M J, Argani P, Heeren R M, Glunde K. Clinical importance of high-mannose, fucosylated, and complex N-glycans in breast cancer metastasis. JCI Insight 2021 6.
- Boyaval F, Dalebout H, Van Zeijl R, Wang W, Fariña-Sarasqueta A, Lageveen-Kammeijer G S M, Boonstra J J, McDonnell L A, Wuhrer M, Morreau H, Heijs B. High-Mannose -Glycans as Malignant Progression Markers in Early-Stage Colorectal Cancer. Cancers (Basel) 2022 14.
- Tsui C K, Twells N, Durieux J, Doan E, Woo J, Khosrojerdi N, Brooks J, Kulepa A, Webster B, Mahal L K, Dillin A. CRISPR screens and lectin microarrays identify high mannose N-glycan regulators. Nat Commun 2024 15, 9970.
- Lusvarghi S, Bewley C A. Griffithsin: An Antiviral Lectin with Outstanding Therapeutic Potential. Viruses 2016 8.
- Koshte V L, van Dijk W, van der Stelt M E, Aalberse R C. Isolation and characterization of BanLec-I, a mannoside-binding lectin from Musa paradisiac (banana). Biochem J 1990 272, 721–726.
- Covés-Datson E M, King S R, Legendre M, Gupta A, Chan S M, Gitlin E, Kulkarni V V, Pantaleón García J, Smee D F, Lipka E, Evans S E, Tarbet E B, Ono A, Markovitz D M. A molecularly engineered antiviral banana lectin inhibits fusion and is efficacious against influenza virus infection in vivo. Proc Natl Acad Sci U S A 2020 117, 2122–2132.
- Metcalfe A J, Andersson M L E, Goodfellow R, Thorstensson C A. Is knee osteoarthritis a symmetrical disease? Analysis of a 12 year prospective cohort study. BMC Musculoskelet Disord 2012 13, 153.
- Vanhooren V, Dewaele S, Libert C, Engelborghs S, De Deyn P P, Toussaint O, Debacq-Chainiaux F, Poulain M, Glupczynski Y, Franceschi C, Jaspers K, van der Pluijm I, Hoeijmakers J, Chen C C. Serum N-glycan profile shift during human ageing. Exp Gerontol 2010 45, 738–743.
- Ding N, Nie H, Sun X, Sun W, Qu Y, Liu X, Yao Y, Liang X, Chen C C, Li Y. Human serum N-glycan profiles are age and sex dependent. Age Ageing 2011 40, 568–575.
- Li H, Patel V, DiMartino S E, Froehlich J W, Lee R S. An in-depth Comparison of the Pediatric and Adult Urinary N-glycomes. Mol Cell Proteomics 2020 19, 1767–1776.
- Ali M. PyCaret: An open-source, low-code machine learning library in Python. .
- Cai Y, Yuan Y, Zhou A. Predictive slope stability early warning model based on CatBoost. Sci Rep 2024 14, 25727.
- Xin Z-C, Zhang J-S, Liu Q. Predicting CaO activity in multiple slag system using improved whale optimization algorithm and categorical boosting. Sci Rep 2025 15, 9533.
- Lundberg S M, Erion G, Chen H, DeGrave A, Prutkin J M, Nair B, Katz R, Himmelfarb J, Bansal N, Lee S-I. From Local Explanations to Global Understanding with Explainable AI for Trees. Nat Mach Intell 2020 2, 56–67.
- Lundberg S, Lee S-I. A unified approach to interpreting model predictions. arXiv [cs.AI] .
- Wang Y, Pan P, Khan A, Çil Ç, Pineda M A. Synovial Fibroblast Sialylation Regulates Cell Migration and Activation of Inflammatory Pathways in Arthritogenesis. Front Immunol 2022 13, 847581.
- Flowers S A, Thomsson K A, Ali L, Huang S, Mthembu Y, Regmi S C, Holgersson J, Schmidt T A, Rolfson O, Björkman L I, Sundqvist M, Karlsson-Bengtsson A, Jay G D, Eisler T, Krawetz R, Karlsson N G. Decrease of core 2 glycans on synovial lubricin in osteoarthritis reduces galectin-3 mediated crosslinking. J Biol Chem 2020 295, 16023–16036.
- Silva A D, Hwang J, Marciel M P, Bellis S L. The pro-inflammatory cytokines IL-1β and IL-6 promote upregulation of the ST6GAL1 sialyltransferase in pancreatic cancer cells. J Biol Chem 2024 300, 107752.
- Varki A., Freeze H. H., and Gagneux P. (2009) in Essentials of Glycobiology, eds Varki A, Cummings RD, Esko JD, Freeze HH, Stanley P, Bertozzi CR, Hart GW, Etzler ME (Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY)).
- Al-Sharif A, Jamal M, Zhang L X, Larson K, Schmidt T A, Jay G D, Elsaid K A. Lubricin/Proteoglycan 4 Binding to CD44 Receptor: A Mechanism of the Suppression of Proinflammatory Cytokine-Induced Synoviocyte Proliferation by Lubricin. Arthritis Rheumatol 2015 67, 1503–1513.
- Iqbal S M, Leonard C, Regmi S C, De Rantere D, Tailor P, Ren G, Ishida H, Hsu C, Abubacker S, Pang D S, Salo P T, Vogel H J, Hart D A, Waterhouse C C, Jay G D, Schmidt T A, Krawetz R J. Lubricin/Proteoglycan 4 binds to and regulates the activity of Toll-Like Receptors In Vitro. Sci Rep 2016 6, 18910.
- Homan K, Onodera T, Hanamatsu H, Furukawa J-I, Momma D, Matsuoka M, Iwasaki N. Articular cartilage corefucosylation regulates tissue resilience in osteoarthritis. eLife 2023 12.
- Gao C, Maeno T, Ota F, Ueno M, Korekane H, Takamatsu S, Shirato K, Matsumoto A, Kobayashi S, Yoshida K, Kitazume S, Ohtsubo K, Betsuyaku T, Taniguchi N. Sensitivity of heterozygous α1,6-fucosyltransferase knock-out mice to cigarette smoke-induced emphysema: implication of aberrant transforming growth factor-β signaling and matrix metalloproteinase gene expression. J Biol Chem 2012 287, 16699–16708.
- Urita A, Matsuhashi T, Onodera T, Nakagawa H, Hato M, Amano M, Seito N, Minami A, Nishimura S-I, Iwasaki N. Alterations of high-mannose type N-glycosylation in human and mouse osteoarthritis cartilage. Arthritis Rheum 2011 63, 3428–3438.
- Lopandić Z, Dragačević L, Popović D, Andjelković U, Minić R, Gavrović-Jankulović M. BanLec-eGFP Chimera as a Tool for Evaluation of Lectin Binding to High-Mannose Glycans on Microorganisms. Biomolecules 2021 11.
- Mori T, O’Keefe B R, Sowder R C 2nd, Bringans S, Gardella R, Berg S, Cochran P, Turpin J A, Buckheit R W, McMahon J B Jr, Boyd M R. Isolation and characterization of griffithsin, a novel HIV-inactivating protein, from the red alga Griffithsia sp. J Biol Chem 2005 280, 9345–9353.
- Zhang N, Lin S, Cui W, Newman P J. Overlapping and unique substrate specificities of ST3GAL1 and 2 during hematopoietic and megakaryocytic differentiation. Blood Adv 2022 6, 3945–3955.
- Comelli E M, Head S R, Gilmartin T, Whisenant T, Haslam S M, North S J, Wong N-K, Kudo T, Narimatsu H, Esko J D, Drickamer K, Dell A, Paulson J C. A focused microarray approach to functional glycomics: transcriptional regulation of the glycome. Glycobiology 2006 16, 117–131.
- Krištić J, Vučković F, Menni C, Klarić L, Keser T, Beceheli I, Pučić-Baković M, Novokmet M, Mangino M, Thaqi K, Rudan P, Novokmet N, Sarac J, Missoni S, Kolčić I, Polašek O, Rudan I, Campbell H, Hayward C, Aulchenko Y, Valdes A, Wilson J F, Gornik O, Primorac D, Zoldoš V, Spector T, Lauc G. Glycans are a novel biomarker of chronological and biological ages. J Gerontol A Biol Sci Med Sci 2014 69, 779–789.
- Han J, Pan Y, Qin W, Gu Y, Xu X, Zhao R, Sha J, Zhang R, Gu J, Ren S. Quantitation of sex-specific serum N-glycome changes in expression level during mouse aging based on Bionic Glycome method. Exp Gerontol 2020 141, 111098.
- Sanchez-Martinez S, Camara O, Piella G, Cikes M, González-Ballester M Á, Miron M, Vellido A, Gómez E, Fraser A G, Bijnens B. Machine Learning for Clinical Decision-Making: Challenges and Opportunities in Cardiovascular Imaging. Front Cardiovasc Med 2021 8, 765693.
- Jordan M I, Mitchell T M. Machine learning: Trends, perspectives, and prospects. Science 2015 349, 255–260.
- Rajula H S R, Verlato G, Manchia M, Antonucci N, Fanos V. Comparison of Conventional Statistical Methods with Machine Learning in Medicine: Diagnosis, Drug Development, and Treatment. Medicina (Kaunas) 2020 56.
- Srinivasu P N, Jaya Lakshmi G, Gudipalli A, Narahari S C, Shafi J, Woźniak M, Ijaz M F. XAI-driven CatBoost multi-layer perceptron neural network for analyzing breast cancer. Scientific Reports 2024 14, 1–19.
- Gonca M, Gul B B, Sert M F. How successful is the CatBoost classifier in diagnosing different dental anomalies in patients via sella turcica and vertebral morphologic alteration?. BMC Med Inform Decis Mak 2024 24, 237.
- Hanani A A, Donmez T B, Kutlu M, Mansour M. Predicting thyroid cancer recurrence using supervised CatBoost: A SHAP-based explainable AI approach. Medicine (Baltimore) 2025 104, e42667.
- Hashimoto K, Tokimatsu T, Kawano S, Yoshizawa A C, Okuda S, Goto S, Kanehisa M. Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans. Carbohydr Res 2009 344, 881–887.
- Raju T S, Briggs J B, Borge S M, Jones A J. Species-specific variation in glycosylation of IgG: evidence for the species-specific sialylation and branch-specific galactosylation and importance for engineering recombinant glycoprotein therapeutics. Glycobiology 2000 10, 477–486.
- Medzihradszky K F, Kaasik K, Chalkley R J. Tissue-Specific Glycosylation at the Glycopeptide Level. Mol Cell Proteomics 14, 2103–2110.
- Aoki-Kinoshita K F. A Practical Guide to Using Glycomics Databases. .
- Raman R, Raguram S, Venkataraman G, Paulson J C, Sasisekharan R. Glycomics: an integrated systems approach to structure-function relationships of glycans. Nat Methods 2, 817–824.
- Rudd P. M., Karlsson N. G., Khoo K.-H., Thaysen-Andersen M., Wells L., and Packer N. H. (2022) in Essentials of Glycobiology, eds Varki A, Cummings RD, Esko JD, Stanley P, Hart GW, Aebi M, Mohnen D, Kinoshita T, Packer NH, Prestegard JH, Schnaar RL, Seeberger PH (Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY)).
- Song X, Heimburg-Molinaro J, Smith D F, Cummings R D. Glycan microarrays of fluorescently-tagged natural glycans. Glycoconj J 32, 465–473.
- Loke I, Kolarich D, Packer N H, Thaysen-Andersen M. Emerging roles of protein mannosylation in inflammation and infection. Mol Aspects Med 51, 31–55.
- Womack S J, Carballo C B, Secor E J, Rodeo S A, Reesink H L. Proteomics Reveals Increased Periostin in Synovial Fluid From Canine and Human Anterior Cruciate Ligament Injury. J Orthop Res 43, 1239–1249.
- Zeni J A Jr, Snyder-Mackler L. Most patients gain weight in the 2 years after total knee arthroplasty: comparison to a healthy control group. Osteoarthritis Cartilage 18, 510–514.
- Tschon M, Contartese D, Pagani S, Borsari V, Fini M. Gender and Sex Are Key Determinants in Osteoarthritis Not Only Confounding Variables. A Systematic Review of Clinical Data. J Clin Med 10.
- Colbath A, Haubruck P. Closing the gap: sex-related differences in osteoarthritis and the ongoing need for translational studies. Ann Transl Med 11, 339.
- Stewart H L, Gilbert D, Stefanovski D, Garman Z, Albro M B, Bais M, Grinstaff M W, Snyder B D, Schaer T P. A missed opportunity: A scoping review of the effect of sex and age on osteoarthritis using large animal models. Osteoarthritis Cartilage 32, 501–513.
- Anderson K L, Zulch H, O’Neill D G, Meeson R L, Collins L M. Risk Factors for Canine Osteoarthritis and Its Predisposing Arthropathies: A Systematic Review. Front Vet Sci 7, 220.
- Kol A, Arzi B, Athanasiou K A, Farmer D L, Nolta J A, Rebhun R B, Chen X, Griffiths L G, Verstraete F J M, Murphy C J, Borjesson D L. Companion animals: Translational scientist’s new best friends. Sci Transl Med 7, 308ps21.
- Gargiulo S, Vecchiarelli L, Pagni E, Gramanzini M. The Role of Canine Models of Human Cancer: Overcoming Drug Resistance Through a Transdisciplinary “One Health, One Medicine” Approach. Cancers (Basel) 17.
- Dolnicka A, Fosse V, Raciborska A, Śmieszek A. Building a Therapeutic Bridge Between Dogs and Humans: A Review of Potential Cross-Species Osteosarcoma Biomarkers. Int J Mol Sci 26.
- McCue M E, McCoy A M. The Scope of Big Data in One Medicine: Unprecedented Opportunities and Challenges. Front Vet Sci 4, 194.
- Koppolu S, Wang L, Mathur A, Nigam J A, Dezzutti C S, Isaacs C, Meyn L, Bunge K E, Moncla B J, Hillier S L, Rohan L C, Mahal L K. Vaginal Product Formulation Alters the Innate Antiviral Activity and Glycome of Cervicovaginal Fluids with Implications for Viral Susceptibility. ACS Infect Dis 4, 1613–1622.
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