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Prevalence of virulent Rhodococcus equi in soil from five R. equi-endemic horse-breeding farms and restriction fragment length polymorphisms of virulence plasmids in isolates from soil and infected foals in Texas.

Abstract: Rhodococcus equi isolates (462) obtained from 64 soil samples collected on 5 R. equi-endemic horse-breeding farms and isolates from 100 infected foals in Texas were examined to determine the prevalence and genotypic diversity of virulence-associated plasmids. Isolates were tested for the presence of 15-17-kDa virulence-associated protein antigens (VapA) by immunoblotting and virulence-associated plasmids by PCR. Plasmid DNAs were isolated and analyzed by digestion with restriction endonucleases for estimation of size and comparison of polymorphisims. Rhodococcus equi were isolated from soil of all 5 farms; however, virulent R. equi were only isolated from 3 of the 5 farms and represented 18.8% (87 of 462) of total isolates. Of the 87 virulent soil isolates, 56 (64.5%) contained an 85-kb type I plasmid, 23 (26.4%) an 87-kb type I plasmid, 7 (8%) a newly defined 85-kb type III plasmid (Tx 43), and 1 (1.1%) a newly defined 85-kb type IV plasmid (Tx 47). Of the 100 isolates from infected foals, 96 were virulent. Of the 96 virulent isolates, 51 (53.1%) contained an 85-kb type I plasmid, 39 (40.6%) an 87-kb type I plasmid, 4 (4.2%) an 85-kb type III plasmid (Tx 43), and 2 (2.1%) an 85-kb type IV plasmid (Tx 47). There are at least 4 different R. equi virulence-associated plasmids in Texas, 2 of which have not previously been described. Based upon virulence plasmid typing, there is geographic diversity among isolates of R. equi from clinical and environmental samples on horse-breeding farms in Texas. There is not a strong correlation between the presence of virulent R. equi in farm soils and the R. equi disease status of those farms.
Publication Date: 2001-11-29 PubMed ID: 11724139DOI: 10.1177/104063870101300606Google Scholar: Lookup
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  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

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The study investigates the occurrence and genetic diversity of a particular bacteria known as Rhodococcus equi in soil samples from five horse-breeding farms in Texas that were experiencing outbreaks. The research also considers samples from 100 infected foals in the same area and uses tests to identify particular proteins and plasmids connected to the bacteria’s harmfulness.

Research Methodology

  • The researchers obtained 462 Rhodococcus equi isolates from 64 soil samples gathered on five horse-breeding farms known for R. equi outbreaks. In addition, they studied isolates from 100 infected foals from the same region.
  • The team checked these isolates for a 15-17-kDa virulence-associated protein antigen (VapA) and virulence-associated plasmids by performing immunoblotting and polymerase chain reaction (PCR) tests.
  • Isolated plasmid DNAs were subject during microbiological analyses to a process known as digestion with restriction endonucleases. This method helps to calculate the size of the plasmids and facilitates comparison of polymorphisms, which are variations at a specific location within the DNA.

Research Findings

  • Rhodococcus equi was identified in the soil collected from all five farms. However, harmful R. equi was only found in three of those farms, forming 18.8% (87 of 462) of the total isolates.
  • Of the 87 virulent soil isolates, varying quantities of different types of plasmids were found. These included an 85-kb type I plasmid, an 87-kb type I plasmid, a newly identified 85-kb type III plasmid (Tx 43), and a new 85-kb type IV plasmid (Tx 47).
  • From the isolates obtained from infected foals, 96 were found to be virulent. These also contained varying quantities of the four different types of plasmids.
  • The study discovered that there are at least four distinct R. equi virulence-associated plasmids in Texas, two of which were novel findings.

Conclusions From The Study

  • Based on the virulence plasmid typing, there is a substantial geographic diversity in the R. equi isolates from clinical and environmental samples taken from the horse-breeding farms in Texas.
  • The study also found that there wasn’t a strong correlation between the presence of virulent R. equi in farm soils and the R. equi disease status of those farms, suggesting that just the presence of these bacteria isn’t a clear disease indicator.

Cite This Article

APA
Takai S, Chaffin MK, Cohen ND, Hara M, Nakamura M, Kakuda T, Sasaki Y, Tsubaki S, Martens RJ. (2001). Prevalence of virulent Rhodococcus equi in soil from five R. equi-endemic horse-breeding farms and restriction fragment length polymorphisms of virulence plasmids in isolates from soil and infected foals in Texas. J Vet Diagn Invest, 13(6), 489-494. https://doi.org/10.1177/104063870101300606

Publication

ISSN: 1040-6387
NlmUniqueID: 9011490
Country: United States
Language: English
Volume: 13
Issue: 6
Pages: 489-494

Researcher Affiliations

Takai, S
  • Department of Animal Hygiene, School of Veterinary Medicine and Animal Sciences, Kitasato University, Towada, Aomori, Japan.
Chaffin, M K
    Cohen, N D
      Hara, M
        Nakamura, M
          Kakuda, T
            Sasaki, Y
              Tsubaki, S
                Martens, R J

                  MeSH Terms

                  • Actinomycetales Infections / genetics
                  • Actinomycetales Infections / veterinary
                  • Animal Husbandry
                  • Animals
                  • DNA Probes
                  • DNA, Bacterial / analysis
                  • Environmental Monitoring
                  • Horse Diseases / genetics
                  • Horse Diseases / microbiology
                  • Horse Diseases / pathology
                  • Horses
                  • Plasmids / genetics
                  • Polymerase Chain Reaction / veterinary
                  • Polymorphism, Restriction Fragment Length
                  • Population Dynamics
                  • Prevalence
                  • Rhodococcus equi / isolation & purification
                  • Rhodococcus equi / pathogenicity
                  • Sequence Analysis, DNA
                  • Soil Microbiology
                  • Virulence

                  Citations

                  This article has been cited 9 times.
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                    doi: 10.1371/journal.pone.0152887pubmed: 27074033google scholar: lookup
                  5. Summer EJ, Liu M, Gill JJ, Grant M, Chan-Cortes TN, Ferguson L, Janes C, Lange K, Bertoli M, Moore C, Orchard RC, Cohen ND, Young R. Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7. Appl Environ Microbiol 2011 Jan;77(2):669-83.
                    doi: 10.1128/AEM.01952-10pubmed: 21097585google scholar: lookup
                  6. Makrai L, Takayama S, Dénes B, Hajtós I, Sasaki Y, Kakuda T, Tsubaki S, Major A, Fodor L, Varga J, Takai S. Characterization of virulence plasmids and serotyping of rhodococcus equi isolates from submaxillary lymph nodes of pigs in Hungary. J Clin Microbiol 2005 Mar;43(3):1246-50.
                  7. Takai S, Martens RJ, Julian A, Garcia Ribeiro M, Rodrigues de Farias M, Sasaki Y, Inuzuka K, Kakuda T, Tsubaki S, Prescott JF. Virulence of Rhodococcus equi isolated from cats and dogs. J Clin Microbiol 2003 Sep;41(9):4468-70.
                  8. Ganbaatar O, Ganzorig S, Tseren-Ochir EO, Suzuki Y, Takai S. Isolation of vapA-positive Rhodococcus equi from soil and fecal samples in Mongolia. J Vet Med Sci 2025 Oct 1;87(10):1112-1115.
                    doi: 10.1292/jvms.25-0267pubmed: 40754416google scholar: lookup
                  9. Rakowska A, Czopowicz M, Bereznowski A, Witkowski L. Investigation of the relationship between pulmonary lesions based on lung ultrasound and respiratory clinical signs in foals with suspected pulmonary rhodococcosis. Sci Rep 2023 Nov 8;13(1):19401.
                    doi: 10.1038/s41598-023-46833-2pubmed: 37938262google scholar: lookup