Abstract: Single-domain antibody fragments (sdAbs) can be isolated from heavy-chain-only antibodies that occur in camelids or the heavy chain of conventional antibodies, that also occur in camelids. Therapeutic application of sdAbs is often complicated by their low serum half-life. Fusion to sdAb that bind to long-lived serum proteins albumin or IgG can prolong serum half-life of fusion partners. Such studies mostly focused on human application. For half-life prolongation in multiple animal species novel species cross-reacting sdAb are needed. We here describe the isolation from immunized llamas of sdAbs G6 and G13 that bound IgG of 9-10 species analysed, including horse, dog, cat, and swine, as well as sdAb A12 that bound horse, dog, swine and cat albumin. A12 bound albumin with 13 to 271 nM affinity dependent on the species. G13 affinity was difficult to determine by biolayer interferometry due to low and heterogeneous signals. G13 and G6 compete for the same binding domain on Fab fragments. Furthermore, they both lack the hallmark residues typical of camelid sdAbs derived from heavy-chain antibodies and had sequence characteristics typical of human sdAbs with high solubility and stability. This suggests they are derived from conventional llama antibodies. They most likely bind IgG through pairing with VL domains at the VH-VL interface rather than a paratope involving complementarity determining regions. None of the isolated sdAb interfered with FcRn binding to albumin or IgG, and thus do not prevent endosomal albumin/IgG-sdAb complex recycling. Fusions of albumin-binding sdAb A12 to several tetanus neurotoxin (TeNT) binding sdAbs prolonged the terminal serum half-life in piglets to about 4 days, comparable to authentic swine albumin. However, G13 conferred a much lower half-life of 0.84 days. Similarly, in horse, G13 prolonged half-life to only 1.2 days whereas A12 fused to two TeNT binding domains (T6T16A12) had a half-life of 21 days. The high half-life of T6T16A12, which earlier proved to be a highly potent TeNT antitoxin, further supports its therapeutic value. Furthermore, we have identified several additional sdAbs that enable tailored half-life extension of biologicals in multiple animal species.
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Overview
This study reports the development of single-domain antibodies (sdAbs) targeting serum IgG and albumin across multiple animal species to extend the half-life of therapeutic biologics.
The researchers isolated sdAbs from llamas that bind serum proteins in various animals, enabling prolonged circulation time of biologic drugs by leveraging these natural serum proteins.
Background on Single-Domain Antibodies (sdAbs)
sdAbs are small antibody fragments derived either from:
Heavy-chain-only antibodies found naturally in camelids (like llamas), or
The heavy chain variable region (VH) of conventional antibodies in camelids.
sdAbs have therapeutic potential but suffer from short serum half-life, limiting their effectiveness.
One strategy to improve therapeutic persistence is fusion of sdAbs to proteins that naturally have long serum half-lives, such as albumin or IgG.
Purpose of the Study
Most prior research focused on human applications and human serum proteins.
This study aims to identify sdAbs that can cross-react with albumin and IgG in multiple animal species, enabling half-life extension of biologics in veterinary or preclinical models.
Methods and Key Findings
Llamas were immunized to produce sdAbs against serum proteins.
Several sdAbs were isolated, including:
G6 and G13: binding IgG from 9–10 species such as horse, dog, cat, swine.
A12: binding albumin from horse, dog, swine, and cat.
Binding affinities:
A12 bound albumin with affinity ranging from 13 to 271 nM depending on the species.
G13’s affinity could not be precisely measured by biolayer interferometry due to low and inconsistent signal but competes with G6 for binding on the Fab fragment of IgG.
sdAbs G13 and G6 exhibit sequence features typical of human sdAbs (high solubility and stability), lacking hallmark camelid heavy-chain antibody residues.
This suggests these sdAbs derive from conventional llama antibodies binding IgG through interaction at the VH-VL interface rather than traditional antigen binding regions.
None of the sdAbs interfered with FcRn-mediated recycling, preserving normal half-life extension mechanisms of albumin/IgG and their sdAb fusions.
Functional Testing of Half-Life Extension
sdAbs fused to tetanus neurotoxin (TeNT) binding sdAbs to test in vivo serum half-life extension in animals.
Results in piglets:
A12 fusion extended the terminal serum half-life to about 4 days, similar to native swine albumin.
G13 fusion extended half-life only to about 0.84 days.
Results in horses:
G13 extended half-life to about 1.2 days.
A12 fused to two TeNT binding domains (T6T16A12) extended half-life dramatically to 21 days.
The long half-life of T6T16A12 supports its potential as a potent long-acting therapeutic antitoxin for tetanus.
Conclusions and Impact
The study identified novel sdAbs that bind albumin or IgG across multiple animal species allowing tailored half-life extension of biologics.
This is particularly advantageous for veterinary therapeutics and preclinical testing in species other than humans.
The findings highlight a promising approach to improve pharmacokinetics of sdAb-based biologics without hindering natural protein recycling processes mediated by FcRn.
The technology can be broadly applied to enhance therapeutic efficacy and dosing convenience for biologics in diverse animal models.
Cite This Article
APA
Harmsen MM, Ackerschott B, de Smit H.
(2024).
Serum immunoglobulin or albumin binding single-domain antibodies that enable tailored half-life extension of biologics in multiple animal species.
Front Immunol, 15, 1346328.
https://doi.org/10.3389/fimmu.2024.1346328
Wageningen Bioveterinary Research, Wageningen University & Research, Lelystad, Netherlands.
Ackerschott, Bart
Research and Development, Smivet B.V., Wijchen, Netherlands.
de Smit, Hans
Research and Development, Smivet B.V., Wijchen, Netherlands.
MeSH Terms
Animals
Humans
Dogs
Horses
Swine
Single-Domain Antibodies
Biological Products
Immunoglobulin Heavy Chains
Albumins
Antitoxins
Immunoglobulin G
Conflict of Interest Statement
BA and HS were employed by Smivet B.V. while performing the work described here. A patent application was filed describing part of this work. The remaining author declares that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors declare that the study was funded by Smivet B.V.. The funder (HS) had the following involvement in the study: conceptualization, study design, supervision, validation, decision to publish, and preparation of the manuscript.
References
This article includes 78 references
nChapman AP, Antoniw P, Spitali M, West S, Stephens S, King DJ. Therapeutic antibody fragments with prolonged in half-lives. Nat Biotechnol (1999) 17:780–3. doi: 10.1038/11717n
nMarques JA, George JK, Smith IJ, Bhakta V, Sheffield WP. A barbourin-albumin fusion protein that is slowly cleared in retains the ability to inhibit platelet aggregation in n. Thromb Haemost (2001) 86:902–8. doi: 10.1055/s-0037-1616148n
nSmith BJ, Popplewell A, Athwal D, Chapman AP, Heywood S, West SM, et al. Prolonged in residence times of antibody fragments associated with albumin. Bioconjug Chem (2001) 12:750–6. doi: 10.1021/bc010003gn
Mandrup OA, Ong SC, Lykkemark S, Dinesen A, Rudnik-Jansen I, Dagnaes-Hansen NF, et al. Programmable half-life and anti-tumour effects of bispecific T-cell engager-albumin fusions with tuned FcRn affinity. Commun Biol (2021) 4:310. doi: 10.1038/s42003-021-01790-2
Godakova SA, Noskov AN, Vinogradova ID, Ugriumova GA, Solovyev AI, Esmagambetov IB, et al. Camelid VHHs fused to human fc fragments provide long term protection against botulinum neurotoxin A in mice. Toxins (2019) 11:464. doi: 10.3390/toxins11080464
nHarmsen MM, Van Solt CB, Fijten HPD, Van Setten MC. Prolonged in residence times of llama single-domain antibody fragments in pigs by binding to porcine immunoglobulins. Vaccine (2005) 23:4926–34. doi: 10.1016/j.vaccine.2005.05.017n
Holt LJ, Basran A, Jones K, Chorlton J, Jespers LS, Brewis ND, et al. Anti-serum albumin domain antibodies for extending the half-lives of short lived drugs. Protein Eng Des Sel. (2008) 21:283–8. doi: 10.1093/protein/gzm067
van Faassen H, Ryan S, Henry KA, Raphael S, Yang Q, Rossotti MA, et al. Serum albumin-binding VHHs with variable pH sensitivities enable tailored half-life extension of biologics. FASEB J (2020) 34:8155–71. doi: 10.1096/fj.201903231R
Shen Z, Xiang Y, Vergara S, Chen A, Xiao Z, Santiago U, et al. A resource of high-quality and versatile nanobodies for drug delivery. iScience (2021) 24:103014. doi: 10.1016/j.isci.2021.103014
Hutt M, Farber-Schwarz A, Unverdorben F, Richter F, Kontermann RE. Plasma half-life extension of small recombinant antibodies by fusion to immunoglobulin-binding domains. J Biol Chem (2012) 287:4462–9. doi: 10.1074/jbc.M111.311522
Chaudhury C, Mehnaz S, Robinson JM, Hayton WL, Pearl DK, Roopenian DC, et al. The major histocompatibility complex-related Fc receptor for IgG (FcRn) binds albumin and prolongs its lifespan. J Exp Med (2003) 197:315–22. doi: 10.1084/jem.20021829
Sand KM, Bern M, Nilsen J, Noordzij HT, Sandlie I, Andersen JT. Unraveling the interaction between fcRn and albumin: opportunities for design of albumin-based therapeutics. Front Immunol (2014) 5:682. doi: 10.3389/fimmu.2014.00682
Ghetie V, Hubbard JG, Kim JK, Tsen MF, Lee Y, Ward ES. Abnormally short serum half-lives of IgG in beta 2-microglobulin-deficient mice. Eur J Immunol (1996) 26:690–6. doi: 10.1002/eji.1830260327
nAndersen JT, Cameron J, Plumridge A, Evans L, Sleep D, Sandlie I. Single-chain variable fragment albumin fusions bind the neonatal Fc receptor (FcRn) in a species-dependent manner: implications for in half-life evaluation of albumin fusion therapeutics. J Biol Chem (2013) 288:24277–85. doi: 10.1074/jbc.M113.463000n
Mitchell LS, Colwell LJ. Analysis of nanobody paratopes reveals greater diversity than classical antibodies. Protein Eng Des Sel. (2018) 31:267–75. doi: 10.1093/protein/gzy017
Lefranc MP, Giudicelli V, Duroux P, Jabado-Michaloud J, Folch G, Aouinti S, et al. IMGT(R), the international ImMunoGeneTics information system(R) 25 years on. Nucleic Acids Res (2015) 43:D413–22. doi: 10.1093/nar/gku1056
Harmsen MM, Ruuls RC, Nijman IJ, Niewold TA, Frenken LGJ, de Geus B. Llama heavy-chain V regions consist of at least four distinct subfamilies revealing novel sequence features. Mol Immunol (2000) 37:579–90. doi: 10.1016/S0161-5890(00)00081-X
Xiang Y, Sang Z, Bitton L, Xu J, Liu Y, Schneidman-Duhovny D, et al. Integrative proteomics identifies thousands of distinct, multi-epitope, and high-affinity nanobodies. Cell Syst (2021) 12:220–34 e9. doi: 10.1016/j.cels.2021.01.003
Vu KB, Ghahroudi MA, Wyns L, Muyldermans S. Comparison of llama VH sequences from conventional and heavy chain antibodies. Mol Immunol (1997) 34:1121–31. doi: 10.1016/s0161-5890(97)00146-6
Conrath KE, Lauwereys M, Galleni M, Matagne A, Frere JM, Kinne J, et al. Beta-lactamase inhibitors derived from single-domain antibody fragments elicited in the camelidae. Antimicrob Agents Chemother (2001) 45:2807–12. doi: 10.1128/AAC.45.10.2807-2812.2001
Deschacht N, De Groeve K, Vincke C, Raes G, De Baetselier P, Muyldermans S. A novel promiscuous class of camelid single-domain antibody contributes to the antigen-binding repertoire. J Immunol (2010) 184:5696–704. doi: 10.4049/jimmunol.0903722
Ward ES, Gussow D, Griffiths AD, Jones PT, Winter G. Binding activities of a repertoire of single immunoglobulin variable domains secreted from Escherichia coli. Nature (1989) 341:544–6. doi: 10.1038/341544a0
nDavies J, Riechmann L. Single antibody domains as small recognition units: design and in antigen selection of camelized, human VH domains with improved protein stability. Protein Eng (1996) 9:531–7. doi: 10.1093/protein/9.6.531n
Martin F, Volpari C, Steinkuhler C, Dimasi N, Brunetti M, Biasiol G, et al. Affinity selection of a camelized V(H) domain antibody inhibitor of hepatitis C virus NS3 protease. Protein Eng (1997) 10:607–14. doi: 10.1093/protein/10.5.607
Arbabi-Ghahroudi M, MacKenzie R, Tanha J. Selection of non-aggregating VH binders from synthetic VH phage-display libraries. Methods Mol Biol (2009) 525:187–216, xiii. doi: 10.1007/978-1-59745-554-1_10
Dudgeon K, Rouet R, Kokmeijer I, Schofield P, Stolp J, Langley D, et al. General strategy for the generation of human antibody variable domains with increased aggregation resistance. Proc Natl Acad Sci (2012) 109:10879–84. doi: 10.1073/pnas.1202866109
Perchiacca JM, Bhattacharya M, Tessier PM. Mutational analysis of domain antibodies reveals aggregation hotspots within and near the complementarity determining regions. Proteins (2011) 79:2637–47. doi: 10.1002/prot.23085
Decanniere K, Desmyter A, Lauwereys M, Ghahroudi MA, Muyldermans S, Wyns L. A single-domain antibody fragment in complex with RNase A: non-canonical loop structures and nanomolar affinity using two CDR loops. Structure Fold Des (1999) 7:361–70. doi: 10.1016/s0969-2126(99)80049-5
Desmyter A, Transue TR, Ghahroudi MA, Thi MH, Poortmans F, Hamers R, et al. Crystal structure of a camel single-domain VH antibody fragment in complex with lysozyme. Nat Struct Biol (1996) 3:803–11. doi: 10.1038/nsb0996-803
Enomoto M, Mantyh PW, Murrell J, Innes JF, Lascelles BDX. Anti-nerve growth factor monoclonal antibodies for the control of pain in dogs and cats. Vet Rec (2019) 184:23. doi: 10.1136/vr.104590
Abanades B, Wong WK, Boyles F, Georges G, Bujotzek A, Deane CM. ImmuneBuilder: Deep-Learning models for predicting the structures of immune proteins. Commun Biol (2023) 6:575. doi: 10.1038/s42003-023-04927-7
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 22:4673–80. doi: 10.1093/nar/22.22.4673
nR-Core-Team . R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; (2022). Available at: http://www.R-project.org/.
Sakamoto Y, Ishiguro M, Kitagawa G. Akaike information criterion statistics. Tokyo: KTK Scientific Publishers; (1986).
Tavaré S. Some probabilistic and statistical problems in the analysis of DNA sequences. Am Math Soc Lect Math Life Sci (1986) 17:57–86.
Harmsen MM, van Hagen-van Setten M, Willemsen PTJ. Small-scale secretory VHH expression in saccharomyces cerevisiae. Methods Mol Biol (2022) 2446:159–79. doi: 10.1007/978-1-0716-2075-5_8
Harmsen MM, Van Solt CB, Fijten HPD, Van Keulen L, Rosalia RA, Weerdmeester K, et al. Passive immunization of Guinea-pigs with llama single-domain antibody fragments against foot-and-mouth disease. Vet Microbiol (2007) 120:193–206. doi: 10.1016/j.vetmic.2006.10.029
Harmsen MM, Fijten HPD, Dekker A, Eblé PL. Passive immunization of pigs with bispecific llama single-domain antibody fragments against foot-and-mouth disease and porcine immunoglobulin. Vet Microbiol (2008) 132:56–64. doi: 10.1016/j.vetmic.2008.04.030
nApiyo D. Biomolecular Binding Kinetics Assays on the Octet® BLI Platform (2022). Available at: https://www.sartorius.com/resource/blob/742330/05671fe2de45d16bd72b8078ac28980d/octet-biomolecular-binding-kinetics-application-note-4014-en-1–data.pdf (Accessed October 23, 2023).
Zhang Y, Huo M, Zhou J, Xie S. PKSolver: An add-in program for pharmacokinetic and pharmacodynamic data analysis in Microsoft Excel. Comput Methods Programs Biomed (2010) 99:306–14. doi: 10.1016/j.cmpb.2010.01.007
Pinheiro JC, Bates DM. Mixed-Effects Models in S and S-PLUS. In: Chambers J, Eddy W, Hardle W, Sheather S, Tierney L, editors. Statistics and Computing. New York: Springer; (2000).
Gorlani A, Lutje Hulsik D, Adams H, Vriend G, Hermans P, Verrips T. Antibody engineering reveals the important role of J segments in the production efficiency of llama single-domain antibodies in Saccharomyces cerevisiae. Protein Eng Des Sel. (2012) 25:39–46. doi: 10.1093/protein/gzr057
Chothia C, Gelfand I, Kister A. Structural determinants in the sequences of immunoglobulin variable domain. J Mol Biol (1998) 278:457–79. doi: 10.1006/jmbi.1998.1653
Chothia C, Novotny J, Bruccoleri R, Karplus M. Domain association in immunoglobulin molecules. The packing of variable domains. J Mol Biol (1985) 186:651–63. doi: 10.1016/0022-2836(85)90137-8
Hopp J, Hornig N, Zettlitz KA, Schwarz A, Fuss N, Muller D, et al. The effects of affinity and valency of an albumin-binding domain (ABD) on the half-life of a single-chain diabody-ABD fusion protein. Protein Eng Des Sel. (2010) 23:827–34. doi: 10.1093/protein/gzq058
Jacobs SA, Gibbs AC, Conk M, Yi F, Maguire D, Kane C, et al. Fusion to a highly stable consensus albumin binding domain allows for tunable pharmacokinetics. Protein Eng Des Sel. (2015) 28:385–93. doi: 10.1093/protein/gzv040
Adams R, Griffin L, Compson JE, Jairaj M, Baker T, Ceska T, et al. Extending the half-life of a fab fragment through generation of a humanized anti-human serum albumin Fv domain: An investigation into the correlation between affinity and serum half-life. mAbs (2016) 8:1336–46. doi: 10.1080/19420862.2016.1185581
Coppieters K, Dreier T, Silence K, de Haard H, Lauwereys M, Casteels P, et al. Formatted anti-tumor necrosis factor alpha VHH proteins derived from camelids show superior potency and targeting to inflamed joints in a murine model of collagen-induced arthritis. Arthritis Rheumatol (2006) 54:1856–66. doi: 10.1002/art.21827
de Wildt RM, Hoet RM, van Venrooij WJ, Tomlinson IM, Winter G. Analysis of heavy and light chain pairings indicates that receptor editing shapes the human antibody repertoire. J Mol Biol (1999) 285:895–901. doi: 10.1006/jmbi.1998.2396
Lloyd C, Lowe D, Edwards B, Welsh F, Dilks T, Hardman C, et al. Modelling the human immune response: performance of a 1011 human antibody repertoire against a broad panel of therapeutically relevant antigens. Protein Eng Des Sel. (2009) 22:159–68. doi: 10.1093/protein/gzn058
Bao GQ, Li Y, Ma QJ, He XL, Xing JL, Yang XM, et al. Isolating human antibody against human hepatocellular carcinoma by guided-selection. Cancer Biol Ther (2005) 4:1374–80. doi: 10.4161/cbt.4.12.2273
Jespers LS, Roberts A, Mahler SM, Winter G, Hoogenboom HR. Guiding the selection of human antibodies from phage display repertoires to a single epitope of an antigen. Biotechnol (N Y). (1994) 12:899–903. doi: 10.1038/nbt0994-899
Cooke HA, Arndt J, Quan C, Shapiro RI, Wen D, Foley S, et al. EFab domain substitution as a solution to the light-chain pairing problem of bispecific antibodies. mAbs (2018) 10:1248–59. doi: 10.1080/19420862.2018.1519631
Jin H, Sepulveda J, Burrone OR. Selection and characterisation of binders based on homodimerisation of immunoglobulin V(H) domains. FEBS Lett (2003) 554:323–9. doi: 10.1016/s0014-5793(03)01182-7
Lesne J, Chang HJ, De Visch A, Paloni M, Barthe P, Guichou JF, et al. Structural basis for chemically-induced homodimerization of a single domain antibody. Sci Rep (2019) 9:1840. doi: 10.1038/s41598-019-38752-y
Skerra A, Pluckthun A. Assembly of a functional immunoglobulin Fv fragment in Escherichia coli. Science (1988) 240:1038–41. doi: 10.1126/science.3285470
Ueda H, Tsumoto K, Kubota K, Suzuki E, Nagamune T, Nishimura H, et al. Open sandwich ELISA: a novel immunoassay based on the interchain interaction of antibody variable region. Nat Biotechnol (1996) 14:1714–8. doi: 10.1038/nbt1296-1714
Glockshuber R, Malia M, Pfitzinger I, Pluckthun A. A comparison of strategies to stabilize immunoglobulin Fv-fragments. Biochemistry (1990) 29:1362–7. doi: 10.1021/bi00458a002
Huston JS, Levinson D, Mudgett-Hunter M, Tai MS, Novotny J, Margolies MN, et al. Protein engineering of antibody binding sites: recovery of specific activity in an anti-digoxin single-chain Fv analogue produced in Escherichia coli. Proc Natl Acad Sci (1988) 85:5879–83. doi: 10.1073/pnas.85.16.5879
Reiter Y, Pastan I. Recombinant Fv immunotoxins and Fv fragments as novel agents for cancer therapy and diagnosis. Trends Biotechnol (1998) 16:513–20. doi: 10.1016/s0167-7799(98)01226-8
Reiter Y, Schuck P, Boyd LF, Plaksin D. An antibody single-domain phage display library of a native heavy chain variable region: isolation of functional single-domain VH molecules with a unique interface. J Mol Biol (1999) 290:685–98. doi: 10.1006/jmbi.1999.2923
Zhu J, Zhang Y, Wang X, Peng L, Ma X, Qiu Z, Kang Z, Zheng F, Zhang X, Song M, Du J, Shi Y, Yu L, Gu C, Shi J. Engineered long-acting Irisin-albumin binding domain fusion protein for enhanced anti-inflammatory efficacy in lipopolysaccharide-induced systemic inflammation.. Commun Biol 2025 Nov 17;8(1):1592.