Abstract: Venezuelan equine encephalitis virus (VEEV) is a previously weaponized arthropod-borne virus responsible for causing acute and fatal encephalitis in animal and human hosts. The increased circulation and spread in the Americas of VEEV and other encephalitic arboviruses, such as eastern equine encephalitis virus and West Nile virus, underscore the need for research aimed at characterizing the pathogenesis of viral encephalomyelitis for the development of novel medical countermeasures. The host-pathogen dynamics of VEEV Trinidad donkey-infected human astrocytoma U87MG cells were determined by carrying out RNA sequencing (RNA-Seq) of poly(A) and mRNAs. To identify the critical alterations that take place in the host transcriptome following VEEV infection, samples were collected at 4, 8, and 16 h postinfection and RNA-Seq data were acquired using an Ion Torrent PGM platform. Differential expression of interferon response, stress response factors, and components of the unfolded protein response (UPR) was observed. The protein kinase RNA-like endoplasmic reticulum kinase (PERK) arm of the UPR was activated, as the expression of both activating transcription factor 4 (ATF4) and CHOP (DDIT3), critical regulators of the pathway, was altered after infection. Expression of the transcription factor early growth response 1 (EGR1) was induced in a PERK-dependent manner. EGR1(-/-) mouse embryonic fibroblasts (MEFs) demonstrated lower susceptibility to VEEV-induced cell death than isogenic wild-type MEFs, indicating that EGR1 modulates proapoptotic pathways following VEEV infection. The influence of EGR1 is of great importance, as neuronal damage can lead to long-term sequelae in individuals who have survived VEEV infection. Objective: Alphaviruses represent a group of clinically relevant viruses transmitted by mosquitoes to humans. In severe cases, viral spread targets neuronal tissue, resulting in significant and life-threatening inflammation dependent on a combination of virus-host interactions. Currently there are no therapeutics for infections cause by encephalitic alphaviruses due to an incomplete understanding of their molecular pathogenesis. Venezuelan equine encephalitis virus (VEEV) is an alphavirus that is prevalent in the Americas and that is capable of infecting horses and humans. Here we utilized next-generation RNA sequencing to identify differential alterations in VEEV-infected astrocytes. Our results indicated that the abundance of transcripts associated with the interferon and the unfolded protein response pathways was altered following infection and demonstrated that early growth response 1 (EGR1) contributed to VEEV-induced cell death.
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This research investigates how Venezuelan equine encephalitis virus (VEEV) interact with human cells, triggering a cellular stress response that may lead to apoptosis, or programmed cell death. By understanding this interaction and the role of the protein EGR1 in this process, new potential treatments for viral encephalitis could be developed.
VEEV is an arthropod-borne virus that has previously been deployed as a biological weapon. It is responsible for acute and potentially fatal encephalitis in animals and humans.
The virus is increasingly prevalent in the Americas, and so understanding its pathogenesis – the development of the disease – is crucial for the development of medical interventions.
This research specifically uses VEEV Trinidad donkey-infected human astrocytoma U87MG cells to study host-pathogen dynamics. This allows the researchers to examine how the virus interacts with human cell structures and proteins.
Studying VEEV-Host Interaction
The researchers used RNA sequencing to study changes in the host transcriptome – the complete set of RNA transcripts, both coding and non-coding, produced by the genome – after VEEV infection at different post-infection intervals: 4, 8, and 16 hours.
The data suggested an altered expression of the interferon response, stress response factors, and components of the unfolded protein response (UPR).
Specifically, an activation of the protein kinase RNA-like endoplasmic reticulum kinase (PERK) arm of the UPR was observed.
Role of EGR1 in VEEV-Induced Cell Death
The data collected shows an altered expression of activating transcription factor 4 (ATF4) and CHOP (DDIT3), which are critical regulators in the UPR pathway.
The expression of the transcription factor early growth response 1 (EGR1) was found to be induced in a PERK-dependent manner. This is significant as it indicates EGR1 may play an essential role in the cell death caused by VEEV.
This hypothesis was further supported by experiments using mouse embryonic fibroblasts (MEFs) with and without the gene for EGR1. The MEFs without EGR1 showed less susceptibility to cell death following VEEV infection, suggesting that EGR1 modulates proapoptotic pathways.
The role of EGR1 in VEEV-triggered cell death could be significant in developing treatments for viral encephalitis, since neuronal damage and the associated long-term effects are serious complications for those who survive VEEV infections.
Cite This Article
APA
Baer A, Lundberg L, Swales D, Waybright N, Pinkham C, Dinman JD, Jacobs JL, Kehn-Hall K.
(2016).
Venezuelan Equine Encephalitis Virus Induces Apoptosis through the Unfolded Protein Response Activation of EGR1.
J Virol, 90(7), 3558-3572.
https://doi.org/10.1128/JVI.02827-15
National Center for Biodefense and Infectious Diseases, School of Systems Biology, George Mason University, Manassas, Virginia, USA.
Lundberg, Lindsay
National Center for Biodefense and Infectious Diseases, School of Systems Biology, George Mason University, Manassas, Virginia, USA.
Swales, Danielle
MRIGlobal, Global Health Security, Rockville, Maryland, USA.
Waybright, Nicole
MRIGlobal, Global Health Security, Rockville, Maryland, USA.
Pinkham, Chelsea
National Center for Biodefense and Infectious Diseases, School of Systems Biology, George Mason University, Manassas, Virginia, USA.
Dinman, Jonathan D
University of Maryland, Department of Cell Biology and Molecular Genetics, College Park, Maryland, USA.
Jacobs, Jonathan L
MRIGlobal, Global Health Security, Rockville, Maryland, USA jjacobs@mriglobal.org kkehnhal@gmu.edu.
Kehn-Hall, Kylene
National Center for Biodefense and Infectious Diseases, School of Systems Biology, George Mason University, Manassas, Virginia, USA jjacobs@mriglobal.org kkehnhal@gmu.edu.
Dembek ZF. Medical aspects of biological warfare. .
Pittman PR, Makuch RS, Mangiafico JA, Cannon TL, Gibbs PH, Peters CJ. Long-term duration of detectable neutralizing antibodies after administration of live-attenuated VEE vaccine and following booster vaccination with inactivated VEE vaccine.. Vaccine 1996 Mar;14(4):337-43.
Erwin-Cohen R, Porter A, Pittman P, Rossi C, Dasilva L. Host responses to live-attenuated Venezuelan equine encephalitis virus (TC-83): comparison of naïve, vaccine responder and nonresponder to TC-83 challenge in human peripheral blood mononuclear cells.. Hum Vaccin Immunother 2012 Aug;8(8):1053-65.
Sharma A, Bhomia M, Honnold SP, Maheshwari RK. Role of adhesion molecules and inflammation in Venezuelan equine encephalitis virus infected mouse brain.. Virol J 2011 Apr 29;8:197.
Bhomia M, Balakathiresan N, Sharma A, Gupta P, Biswas R, Maheshwari R. Analysis of microRNAs induced by Venezuelan equine encephalitis virus infection in mouse brain.. Biochem Biophys Res Commun 2010 Apr 23;395(1):11-6.
Peng BH, Borisevich V, Popov VL, Zacks MA, Estes DM, Campbell GA, Paessler S. Production of IL-8, IL-17, IFN-gamma and IP-10 in human astrocytes correlates with alphavirus attenuation.. Vet Microbiol 2013 May 3;163(3-4):223-34.
Lundberg L, Pinkham C, Baer A, Amaya M, Narayanan A, Wagstaff KM, Jans DA, Kehn-Hall K. Nuclear import and export inhibitors alter capsid protein distribution in mammalian cells and reduce Venezuelan Equine Encephalitis Virus replication.. Antiviral Res 2013 Dec;100(3):662-72.
Zook JM, Samarov D, McDaniel J, Sen SK, Salit M. Synthetic spike-in standards improve run-specific systematic error analysis for DNA and RNA sequencing.. PLoS One 2012;7(7):e41356.
Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.. Bioinformatics 2010 Jan 1;26(1):139-40.
Baggerly KA, Deng L, Morris JS, Aldaz CM. Differential expression in SAGE: accounting for normal between-library variation.. Bioinformatics 2003 Aug 12;19(12):1477-83.
Croft D, Mundo AF, Haw R, Milacic M, Weiser J, Wu G, Caudy M, Garapati P, Gillespie M, Kamdar MR, Jassal B, Jupe S, Matthews L, May B, Palatnik S, Rothfels K, Shamovsky V, Song H, Williams M, Birney E, Hermjakob H, Stein L, D'Eustachio P. The Reactome pathway knowledgebase.. Nucleic Acids Res 2014 Jan;42(Database issue):D472-7.
Austin D, Baer A, Lundberg L, Shafagati N, Schoonmaker A, Narayanan A, Popova T, Panthier JJ, Kashanchi F, Bailey C, Kehn-Hall K. p53 Activation following Rift Valley fever virus infection contributes to cell death and viral production.. PLoS One 2012;7(5):e36327.
Baer A, Austin D, Narayanan A, Popova T, Kainulainen M, Bailey C, Kashanchi F, Weber F, Kehn-Hall K. Induction of DNA damage signaling upon Rift Valley fever virus infection results in cell cycle arrest and increased viral replication.. J Biol Chem 2012 Mar 2;287(10):7399-410.
Reynaud JM, Kim DY, Atasheva S, Rasalouskaya A, White JP, Diamond MS, Weaver SC, Frolova EI, Frolov I. IFIT1 Differentially Interferes with Translation and Replication of Alphavirus Genomes and Promotes Induction of Type I Interferon.. PLoS Pathog 2015 Apr;11(4):e1004863.
Ramana CV, Gil MP, Han Y, Ransohoff RM, Schreiber RD, Stark GR. Stat1-independent regulation of gene expression in response to IFN-gamma.. Proc Natl Acad Sci U S A 2001 Jun 5;98(12):6674-9.
Cao XM, Guy GR, Sukhatme VP, Tan YH. Regulation of the Egr-1 gene by tumor necrosis factor and interferons in primary human fibroblasts.. J Biol Chem 1992 Jan 15;267(2):1345-9.
Mitra R, Satpathy M, Srinivas S. Tunicamycin induced unfolded protein response (UPR) in cultured bovine trabecular meshwork (TM) cells. Invest Ophthalmol Vis Sci 43:4086.
Malhotra JD, Kaufman RJ. The endoplasmic reticulum and the unfolded protein response.. Semin Cell Dev Biol 2007 Dec;18(6):716-31.
Pagel JI, Deindl E. Early growth response 1--a transcription factor in the crossfire of signal transduction cascades.. Indian J Biochem Biophys 2011 Aug;48(4):226-35.
Pagel JI, Deindl E. Disease progression mediated by egr-1 associated signaling in response to oxidative stress.. Int J Mol Sci 2012 Oct 12;13(10):13104-17.
Cai Y, Liu Y, Zhang X. Induction of transcription factor Egr-1 gene expression in astrocytoma cells by Murine coronavirus infection.. Virology 2006 Nov 25;355(2):152-63.
Kim JH, Kim WS, Park C. Epstein-Barr virus latent membrane protein 1 increases genomic instability through Egr-1-mediated up-regulation of activation-induced cytidine deaminase in B-cell lymphoma.. Leuk Lymphoma 2013 Sep;54(9):2035-40.
Saha S, Rangarajan PN. Common host genes are activated in mouse brain by Japanese encephalitis and rabies viruses.. J Gen Virol 2003 Jul;84(Pt 7):1729-1735.
Liang SH, Zhang W, McGrath BC, Zhang P, Cavener DR. PERK (eIF2alpha kinase) is required to activate the stress-activated MAPKs and induce the expression of immediate-early genes upon disruption of ER calcium homoeostasis.. Biochem J 2006 Jan 1;393(Pt 1):201-9.
Seyfert VL, McMahon S, Glenn W, Cao XM, Sukhatme VP, Monroe JG. Egr-1 expression in surface Ig-mediated B cell activation. Kinetics and association with protein kinase C activation.. J Immunol 1990 Dec 1;145(11):3647-53.
Myung DS, Park YL, Kim N, Chung CY, Park HC, Kim JS, Cho SB, Lee WS, Lee JH, Joo YE. Expression of early growth response-1 in colorectal cancer and its relation to tumor cell proliferation and apoptosis.. Oncol Rep 2014 Feb;31(2):788-94.
Wagner M, Schmelz K, Dörken B, Tamm I. Transcriptional regulation of human survivin by early growth response (Egr)-1 transcription factor.. Int J Cancer 2008 Mar 15;122(6):1278-87.
Kehn-Hall K, Narayanan A, Lundberg L, Sampey G, Pinkham C, Guendel I, Van Duyne R, Senina S, Schultz KL, Stavale E, Aman MJ, Bailey C, Kashanchi F. Modulation of GSK-3β activity in Venezuelan equine encephalitis virus infection.. PLoS One 2012;7(4):e34761.
Muehlenbein MP, Cogswell FB, James MA, Koterski J, Ludwig GV. Testosterone correlates with Venezuelan equine encephalitis virus infection in macaques.. Virol J 2006 Mar 29;3:19.
Schoneboom BA, Catlin KM, Marty AM, Grieder FB. Inflammation is a component of neurodegeneration in response to Venezuelan equine encephalitis virus infection in mice.. J Neuroimmunol 2000 Sep 22;109(2):132-46.
Schoneboom BA, Lee JS, Grieder FB. Early expression of IFN-alpha/beta and iNOS in the brains of Venezuelan equine encephalitis virus-infected mice.. J Interferon Cytokine Res 2000 Feb;20(2):205-15.
Barry G, Fragkoudis R, Ferguson MC, Lulla A, Merits A, Kohl A, Fazakerley JK. Semliki forest virus-induced endoplasmic reticulum stress accelerates apoptotic death of mammalian cells.. J Virol 2010 Jul;84(14):7369-77.
John L, Thomas S, Herchenröder O, Pützer BM, Schaefer S. Hepatitis E virus ORF2 protein activates the pro-apoptotic gene CHOP and anti-apoptotic heat shock proteins.. PLoS One 2011;6(9):e25378.
Spuul P, Balistreri G, Hellström K, Golubtsov AV, Jokitalo E, Ahola T. Assembly of alphavirus replication complexes from RNA and protein components in a novel trans-replication system in mammalian cells.. J Virol 2011 May;85(10):4739-51.
Fros JJ, Major LD, Scholte FEM, Gardner J, van Hemert MJ, Suhrbier A, Pijlman GP. Chikungunya virus non-structural protein 2-mediated host shut-off disables the unfolded protein response.. J Gen Virol 2015 Mar;96(Pt 3):580-589.
Atasheva S, Krendelchtchikova V, Liopo A, Frolova E, Frolov I. Interplay of acute and persistent infections caused by Venezuelan equine encephalitis virus encoding mutated capsid protein.. J Virol 2010 Oct;84(19):10004-15.
Jauhiainen A, Thomsen C, Strömbom L, Grundevik P, Andersson C, Danielsson A, Andersson MK, Nerman O, Rörkvist L, Ståhlberg A, Åman P. Distinct cytoplasmic and nuclear functions of the stress induced protein DDIT3/CHOP/GADD153.. PLoS One 2012;7(4):e33208.
Fan Y, Zou W, Green LA, Kim BO, He JJ. Activation of Egr-1 expression in astrocytes by HIV-1 Tat: new insights into astrocyte-mediated Tat neurotoxicity.. J Neuroimmune Pharmacol 2011 Mar;6(1):121-9.
Fu ZF, Weihe E, Zheng YM, Schäfer MK, Sheng H, Corisdeo S, Rauscher FJ 3rd, Koprowski H, Dietzschold B. Differential effects of rabies and borna disease viruses on immediate-early- and late-response gene expression in brain tissues.. J Virol 1993 Nov;67(11):6674-81.
Lehman CW, Smith A, Kelly J, Jacobs JL, Dinman JD, Kehn-Hall K. EGR1 Upregulation during Encephalitic Viral Infections Contributes to Inflammation and Cell Death. Viruses 2022 Jun 2;14(6).
Yuan L, Fung TS, He J, Chen RA, Liu DX. Modulation of viral replication, apoptosis and antiviral response by induction and mutual regulation of EGR and AP-1 family genes during coronavirus infection. Emerg Microbes Infect 2022 Dec;11(1):1717-1729.
Lu J, Li Y, Gong S, Wang J, Lu X, Jin Q, Lu B, Chen Q. Ciclopirox targets cellular bioenergetics and activates ER stress to induce apoptosis in non-small cell lung cancer cells. Cell Commun Signal 2022 Mar 24;20(1):37.
Kirui J, Abidine Y, Lenman A, Islam K, Gwon YD, Lasswitz L, Evander M, Bally M, Gerold G. The Phosphatidylserine Receptor TIM-1 Enhances Authentic Chikungunya Virus Cell Entry. Cells 2021 Jul 20;10(7).
Zhao Y, Hu N, Jiang Q, Zhu L, Zhang M, Jiang J, Xiong M, Yang M, Yang J, Shen L, Zhang S, Niu L, Chen L, Chen D. Protective effects of sodium butyrate on rotavirus inducing endoplasmic reticulum stress-mediated apoptosis via PERK-eIF2α signaling pathway in IPEC-J2 cells. J Anim Sci Biotechnol 2021 Jun 11;12(1):69.
Dahal B, Lehman CW, Akhrymuk I, Bracci NR, Panny L, Barrera MD, Bhalla N, Jacobs JL, Dinman JD, Kehn-Hall K. PERK Is Critical for Alphavirus Nonstructural Protein Translation. Viruses 2021 May 12;13(5).
Yao Z, Zanini F, Kumar S, Karim M, Saul S, Bhalla N, Panpradist N, Muniz A, Narayanan A, Quake SR, Einav S. The transcriptional landscape of Venezuelan equine encephalitis virus (TC-83) infection. PLoS Negl Trop Dis 2021 Mar;15(3):e0009306.
Vastrad B, Vastrad C, Tengli A. Identification of potential mRNA panels for severe acute respiratory syndrome coronavirus 2 (COVID-19) diagnosis and treatment using microarray dataset and bioinformatics methods. 3 Biotech 2020 Oct;10(10):422.
Bahrampour Juybari K, Pourhanifeh MH, Hosseinzadeh A, Hemati K, Mehrzadi S. Melatonin potentials against viral infections including COVID-19: Current evidence and new findings. Virus Res 2020 Oct 2;287:198108.
Bocan TM, Stafford RG, Brown JL, Akuoku Frimpong J, Basuli F, Hollidge BS, Zhang X, Raju N, Swenson RE, Smith DR. Characterization of Brain Inflammation, Apoptosis, Hypoxia, Blood-Brain Barrier Integrity and Metabolism in Venezuelan Equine Encephalitis Virus (VEEV TC-83) Exposed Mice by In Vivo Positron Emission Tomography Imaging. Viruses 2019 Nov 13;11(11).
Dahal B, Lin SC, Carey BD, Jacobs JL, Dinman JD, van Hoek ML, Adams AA, Kehn-Hall K. EGR1 upregulation following Venezuelan equine encephalitis virus infection is regulated by ERK and PERK pathways contributing to cell death. Virology 2020 Jan 2;539:121-128.
Wang Q, Xin X, Wang T, Wan J, Ou Y, Yang Z, Yu Q, Zhu L, Guo Y, Wu Y, Ding Z, Zhang Y, Pan Z, Tang Y, Li S, Kong L. Japanese Encephalitis Virus Induces Apoptosis and Encephalitis by Activating the PERK Pathway. J Virol 2019 Sep 1;93(17).
Hacker K, Benke S, Agerer B, Scinicariello S, Budroni V, Versteeg GA. A repetitive acidic region contributes to the extremely rapid degradation of the cell-context essential protein TRIM52. Sci Rep 2019 May 27;9(1):7901.
Mehrbod P, Ande SR, Alizadeh J, Rahimizadeh S, Shariati A, Malek H, Hashemi M, Glover KKM, Sher AA, Coombs KM, Ghavami S. The roles of apoptosis, autophagy and unfolded protein response in arbovirus, influenza virus, and HIV infections. Virulence 2019 Dec;10(1):376-413.
Zhu Z, Du X, Li P, Zhang X, Yang F, Cao W, Tian H, Zhang K, Liu X, Zheng H. Early Growth Response Gene-1 Suppresses Foot-and-Mouth Disease Virus Replication by Enhancing Type I Interferon Pathway Signal Transduction. Front Microbiol 2018;9:2326.
Russell JA, Campos B, Stone J, Blosser EM, Burkett-Cadena N, Jacobs JL. Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol. Sci Rep 2018 Apr 3;8(1):5417.
Lewy TG, Grabowski JM, Bloom ME. BiP: Master Regulator of the Unfolded Protein Response and Crucial Factor in Flavivirus Biologyu2029. Yale J Biol Med 2017 Jun;90(2):291-300.
Nayak TK, Mamidi P, Kumar A, Singh LP, Sahoo SS, Chattopadhyay S, Chattopadhyay S. Regulation of Viral Replication, Apoptosis and Pro-Inflammatory Responses by 17-AAG during Chikungunya Virus Infection in Macrophages. Viruses 2017 Jan 6;9(1).
Lundberg L, Pinkham C, de la Fuente C, Brahms A, Shafagati N, Wagstaff KM, Jans DA, Tamir S, Kehn-Hall K. Selective Inhibitor of Nuclear Export (SINE) Compounds Alter New World Alphavirus Capsid Localization and Reduce Viral Replication in Mammalian Cells. PLoS Negl Trop Dis 2016 Nov;10(11):e0005122.
Moomau C, Musalgaonkar S, Khan YA, Jones JE, Dinman JD. Structural and Functional Characterization of Programmed Ribosomal Frameshift Signals in West Nile Virus Strains Reveals High Structural Plasticity Among cis-Acting RNA Elements. J Biol Chem 2016 Jul 22;291(30):15788-95.
Williams EP, Xue Y, Vogel P, Yang D, Ponce-Flores A, Li X, Ogorek TJ, Saini M, Iulek J, Ruiz FX, Arnold E, Golden JE, Meibohm B, Jonsson CB. The antiviral BDGR-49 provides protection from lethal, neurotropic Venezuelan equine encephalitis virus intranasal infection in mice. J Virol 2025 Mar 18;99(3):e0167924.
VanderGiessen M, de Jager C, Leighton J, Xie H, Theus M, Johnson E, Kehn-Hall K. Neurological manifestations of encephalitic alphaviruses, traumatic brain injuries, and organophosphorus nerve agent exposure. Front Neurosci 2024;18:1514940.
Kämper L, Kuhl I, Vallbracht M, Hoenen T, Linne U, Weber A, Chlanda P, Kracht M, Biedenkopf N. To be or not to be phosphorylated: understanding the role of Ebola virus nucleoprotein in the dynamic interplay with the transcriptional activator VP30 and the host phosphatase PP2A-B56. Emerg Microbes Infect 2025 Dec;14(1):2447612.
Gong Y, Yong D, Liu G, Xu J, Ding J, Jia W. A Novel Self-Amplifying mRNA with Decreased Cytotoxicity and Enhanced Protein Expression by Macrodomain Mutations. Adv Sci (Weinh) 2024 Nov;11(43):e2402936.
Corne A, Adolphe F, Estaquier J, Gaumer S, Corsi JM. ATF4 Signaling in HIV-1 Infection: Viral Subversion of a Stress Response Transcription Factor. Biology (Basel) 2024 Feb 26;13(3).
Yang R, Wang X, Liu H, Chen J, Tan C, Chen H, Wang X. Egr-1 is a key regulator of the blood-brain barrier damage induced by meningitic Escherichia coli. Cell Commun Signal 2024 Jan 17;22(1):44.
Zhang M, Lv L, Luo H, Cai H, Yu L, Jiang Y, Gao F, Tong W, Li L, Li G, Zhou Y, Tong G, Liu C. The CD2v protein of African swine fever virus inhibits macrophage migration and inflammatory cytokines expression by downregulating EGR1 expression through dampening ERK1/2 activity. Vet Res 2023 Nov 15;54(1):106.