Glycogen branching enzyme deficiency (GBED) is a fatal disorder caused by a gene mutation found in the Quarter Horse and Paint Horse bloodlines.
GBED causes abortion in late-term pregnancies, stillbirth or severe muscle weakness and eventually death in newborn foals.
GBED prevents foals from properly storing sugars in the body. As a result, there is not enough energy to fuel the important organs and muscles of the body. This causes severe weakness and other clinical signs.
Genetic testing for diseases is required for most QH and APH horses in breeding programs to ensure healthy offspring and prevent financial loss associated with losing a foal.
Glycogen Branching Enzyme Disease in Horses
GBED is a fatal and incurable condition caused by the lack of glycogen branching enzyme (GBE) in the horse’s body.
GBE is involved in making glycogen, a storage form of glucose. Without GBE, normal glycogen cannot be formed. Instead, abnormal glycogen forms which can not be broken down to provide energy. This impairs the function of the horse’s skeletal muscles, heart, liver, and brain.
Fetuses with GBED are usually stillborn or aborted in late-term pregnancy. Foals that survive birth typically die or are humanely euthanized by eight weeks of age. [1]
Prevalence
GBED is an autosomal recessive trait that affects the foal when both parents carry a copy of the mutated GBE1 gene. [2] Horses can be carriers of the disorder without presenting symptoms.
Approximately 8% of Quarter Horses (QH) and 7% of American Paint Horses (APH) are believed to carry the GBED mutation. [3][2] The allele for GBED is also commonly found in western pleasure, working cow horses and cutting horses.
Recent studies indicate that GBED is becoming more prevalent in affected breeds. Diligent efforts to control the breeding of carrier horses must be implemented. [4]
Clinical Signs
Clinical signs of GBED can be difficult to recognize as they mimic other diseases that commonly affect foals.
Foals that survive to term can demonstrate the following signs of GBED: [6][7][8]
- Weakness & lethargy
- Inability to stand or nurse
- Low body temperature or hypothermia
- High serum CK, AST and GGT
- Extended periods of recumbency
- Contracted tendons in all legs
- Seizures
- Fast breathing & respiratory failure
- Cardiac failure
- Sudden collapse or death
Foals can seem healthy for short periods of time before becoming very sick. Affected foals often need warming after birth. [6]
If foals are too weak to nurse or bottle-feed regularly, hypoglycemic seizures or heart failure can occur.
Unlike other genetic muscle disorders, foals with GBED do not develop firm and painful muscles. [8]
If you suspect your foal has GBED or another genetic condition, contact your veterinarian immediately for examination and diagnosis.
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What Causes GBED in Horses?
Normal Glycogen Synthesis
Glycogen is a form of glucose stored in the liver and muscles to provide energy to those tissues and the rest of the body.
Glycogen is broken down to release glucose molecules for skeletal and cardiac muscle contraction, and to maintain stable blood glucose levels. [9]
The Glycogen Branching Enzyme (GBE) adds branches to the glycogen structure. This enzyme generates α-1,6-glucosidic branches from α-1,4-linked glucose chains.
In a normal horse, the GBE1 gene encodes a functional glycogen branching enzyme to synthesize glycogen. This allows the horse’s cells to store sugars needed for energy.
The GBED mutation
Horses with GBED have a nonsense mutation in codon 34 of the GBE1 gene. This stops protein synthesis and results in no functional GBE found in the cells. This leads to the production of abnormal glycogen molecules, which lacks the branching structure. [10]
This mutation inhibits glycogenolysis, which is the breakdown of glycogen into glucose. Abnormal glycogen molecules accumulate in the liver and muscles, resembling large granules with fewer branch points. [9]
As a result, glycogen cannot be used effectively. [1][11] Blood sugar regulation is dysfunctional, and the horse does not have adequate energy to fuel muscle contractions and other processes.
Newborn foals are particularly sensitive to changes in glycogen homeostasis. Organ dysfunction and extreme muscle weakness can occur shortly after birth. [6][11]
Other Breeds
There are no known or verified cases of GBED outside of the QH and APH breeds. [6] Researchers suggest that breeds descending from the QH, such as the Appaloosa, may be affected. However, there is a lack of evidence for this claim.
While it has been suggested that Thoroughbreds may be affected by GBED, there is no evidence of this genetic disorder in the breed. The original American Quarter Horse Association (AQHA) included Thoroughbreds in their breed registry, as long as their coat colours met their requirements. [1]
The original ancestor of the mutated gene likely belonged to the Quarter Horse or paint pedigree, likely in the early 1900s. Fortunately, this stallion has not been found in any Thoroughbred pedigrees. [1]
Diagnosis
QH or APH foals that present clinical signs of GBED from birth should be suspected of having GBED. [8] Since the disorder is not sex-linked, both colts and fillies are affected equally. [6]
Consult your veterinarian to confirm a suspected diagnosis and rule out other conditions. A skeletal muscle biopsy and other lab tests may be required.
Genetic Testing
When a carrier dam is bred to a carrier stallion, there is a 25% chance of the foal having GBED. Therefore, genetic testing of the parents is recommended if QH or APH are used in a breeding program.
Lab technicians will analyze mane or tail hair samples to identify whether horses are carriers of GBED.
The average cost for GBED testing is $100 but can vary between laboratories. [6] You will be asked to submit a few strands of hair (10 or more) with roots intact for genetic testing.
Muscle Biopsy & Staining
Initial diagnosis of GBED is usually made using periodic acid-Schiff (PAS) staining of skeletal (or cardiac) muscle in foals who were born alive. [8]
In comparison to the muscle tissue of a normal horse, muscle samples from foals with GBED have a characteristic staining pattern. [6] The background of normal tissue stains pink, whereas GBED-affected muscle contains large clumps of purple without a pink background.
The hindlimb muscles of foals with GBED often have extensive muscle fiber degeneration or necrosis prior to euthanasia. Conducting a biopsy on affected muscles can help confirm the diagnosis. [9]
Carriers of the GBE1 mutation have limited (50%) GBE activity compared to healthy control horses. However, they do not show clinical signs of the disease. [9]
GBE activity is noticeably reduced in blood, muscle and liver tissue samples from affected foals. [10] These foals cannot form or store normally branched glycogen, which prevents glycogenolysis and the release of glucose. [3]
Post-mortem liver or muscle analysis can also be done to determine whether a foal was affected by GBED.
Blood Work
Blood samples can be used to assist in diagnosing foals with GBED. Affected foals may have low white blood cell count, low blood glucose and moderate-high serum creatine kinase (CK), aspartate transaminase (AST) and gamma glutamyl transferase (GGT) levels. [2]
When glucose levels drop below normal, bodily functions that require sugars begin to shut down. Intermittent hypoglycemia can be identified when measuring blood glucose levels in GBED foals. [9]
Other Findings
Several findings from individual case reports in foals with GBED have assisted with diagnosis.
Following sudden recumbency at eight weeks, one filly was found to have monocytosis – abnormally elevated levels of infection-fighting monocytes indicating inflammation in the body. [9]
Elevated triglycerides alongside increased liver and muscle enzymes can also indicate a muscular energy shortage and increased requirements for fatty acids. This can occur when glucose is not available for energy.
Researchers have proposed that some foals with GBED may exhibit nervous system dysfunction due to a lack of glucose supply to the brain. [9] However, this does not occur in all foals.
It is unknown whether gait incoordination and awkward movement in affected foals are caused by muscle weakness or brain dysfunction. [9]

Management
There is no treatment or cure for horses born with GBED. Euthanasia is warranted in many cases, and most affected foals die or are euthanized by eight weeks of age. [1]
One foal survived until 18 weeks with extensive care from handlers. [9]
Regularly administering milk to an affected foal with a bottle or through a tube and helping them stand and suckle can improve their short-term prognosis. However, this condition is always fatal, and health can worsen overnight.
Prevention
Responsible breeding is essential for preventing GBED in horses. When a foal is born with a genetic disease, the financial and emotional loss can be devastating for breeders.
Stallion owners may offer free repeat breeding to owners of GBED foals. Unfortunately, there is a 25% chance that the next foal will be aborted or born with the same condition if both parents are carriers.
To limit the prevalence of hereditary disease in the QH and APH populations, pre-screening for genetic diseases is necessary.
Genetic testing and informed breeding keep popular bloodlines alive while minimizing foal death. [1]
AQHA 5-Panel Genetic Testing
The American Quarter Horse Association (AQHA) offers affordable genetic health testing to screen Quarter Horses for five disorders. Some genetic diseases are common in the breed, so responsible breeding is promoted by the association. [5]
The five-panel genetic test includes screening for the following diseases:
- Glycogen branching enzyme deficiency
- Hereditary equine regional dermal asthenia (HERDA)
- Hyperkalemic periodic paralysis (HYPP)
- Malignant hyperthermia (MH)
- Polysaccharide storage myopathy (PSSM)
As of 2015, 5-panel genetic testing is required for all registered AQHA breeding stallions. Mares are not included in this requirement, although testing is always recommended.
Since GBED is recessive, registered mares can be carriers and pass the gene mutation on to their offspring.
APHA 6-Panel Genetic Testing
The American Paint Horse Association (APHA) offers a Genetic Health Panel through the Veterinary Genetics Laboratory at the University of California (UC) Davis. [5]
This test is affordable and can identify the presence of six genetic diseases that affect APHs, including:
- Glycogen branching enzyme deficiency
- Hereditary equine regional dermal asthenia
- Hyperkalemic periodic paralysis
- Overo lethal white syndrome (OLWS)
- Malignant hyperthermia
- Polysaccharide storage myopathy
The results of this exam are kept on the horse’s APHA record. As of 2017, all breeding stallions registered through the APHA have the results of their health panel on file.
If the stallion’s results are not on file, foals from future breedings are considered ineligible for registration with the APHA.
Understanding Test Results
GBED lab test results will be reported as one of the following: [6]
- N/N (n/n)genotype: The horse is not affected by GBED and is not a carrier of the disease.
- N/G (n/Gb) genotype: The horse is not affected by GBED, but is a carrier of the disease. There is a 50% chance of the defective gene being passed onto offspring. The fatal disease has a 25% chance of being present in offspring if the other parent is a carrier.
- G/G (Gb/Gb) genotype: The horse is affected by GBED, which is always fatal.
Frequently Asked Questions
Here are some frequently asked questions about Glycogen Branching Enzyme Deficiency (GBED):
Glycogen branching enzyme deficiency is a fatal genetic disorder that prevents foals from storing and using glycogen normally for energy. Without usable glycogen, muscles, heart tissue, liver, and brain cells cannot function properly. Affected foals often become weak shortly after birth, struggle to nurse, or collapse suddenly. Many pregnancies also end in late-term abortion or stillbirth due to severe energy deficiency before birth.
GBED mutations are most commonly found in Quarter Horses and American Paint Horses, especially within western pleasure, cutting, and working cow horse bloodlines. Researchers believe around 8% of Quarter Horses and 7% of Paint Horses carry the mutation. Although Appaloosas may potentially carry related bloodlines, there are currently no verified cases of GBED outside Quarter Horse and Paint Horse populations.
GBED affects colts and fillies equally because the disorder is not linked to sex chromosomes. Any foal that inherits two copies of the mutated GBE1 gene can develop the disease regardless of sex. Carrier horses usually appear completely healthy, which is why genetic testing plays such an important role in breeding programs involving Quarter Horses and Paint Horses.
Signs of GBED in foals include severe weakness, inability to stand or nurse, low body temperature, seizures, and long periods spent lying down. Some foals also develop fast breathing, heart failure, contracted tendons, or sudden collapse. Affected foals may briefly appear healthy before rapidly declining, which can make early signs difficult to recognize without veterinary evaluation and diagnostic testing.
GBED does not usually cause firm or painful muscles like some other equine muscle disorders. Instead, affected foals develop profound weakness because abnormal glycogen cannot supply enough energy to muscles and organs. Many foals become unable to stand, nurse, or maintain normal body temperature even though muscles may not appear swollen, hard, or visibly painful during examination.
GBED is diagnosed through genetic testing, blood work, muscle biopsy, and tissue staining performed by a veterinarian or diagnostic laboratory. Hair samples with intact roots are commonly used for genetic screening in breeding horses. Veterinarians may also evaluate glucose levels, muscle enzymes, and muscle tissue changes to confirm that glycogen storage and energy metabolism are severely impaired.
Genetic testing can identify horses that carry the GBED mutation even when they show no outward signs of disease. Carrier horses inherit one normal gene and one mutated gene, allowing them to remain healthy while still passing the mutation to offspring. Testing both breeding horses before mating greatly reduces the risk of producing affected foals with this fatal condition.
GBED testing commonly costs around $100 USD, although pricing can vary between laboratories and testing panels. Most tests require at least 10 hairs with roots attached from the mane or tail. Many owners combine GBED screening with larger genetic panels offered by breed associations to evaluate several inherited diseases at the same time before breeding decisions are made.
Foals with glycogen branching enzyme deficiency rarely survive beyond eight weeks of age because the disorder prevents normal energy production throughout the body. Intensive nursing care may temporarily support affected foals, but weakness and organ dysfunction continue to worsen over time. One documented foal survived to 18 weeks with extensive care, although GBED remains universally fatal.
GBED does not have a cure or effective long-term treatment because affected foals cannot produce functional glycogen branching enzyme. Supportive care may include warming, bottle feeding, tube feeding, and assistance with standing or nursing. These measures can temporarily stabilize some foals, but progression of muscle weakness and organ failure continues despite intensive veterinary and nursing care.
Breeding two GBED carriers creates a 25% chance of producing an affected foal with every pregnancy. There is also a 50% chance the foal becomes a healthy carrier and a 25% chance the foal inherits no copies of the mutation. Because carriers appear normal, genetic testing before breeding remains the only reliable way to predict inherited risk.
AQHA requires five-panel genetic testing for all registered breeding stallions, including screening for GBED. This testing program also checks for HERDA, HYPP, malignant hyperthermia, and polysaccharide storage myopathy. Mares are not currently required to undergo testing, but many breeders still screen mares to reduce the chance of producing affected or carrier foals.
APHA requires breeding stallions to have genetic health panel results on file before offspring become eligible for registration. This panel includes GBED along with several other inherited diseases common in Paint Horses. Results remain part of the horse’s permanent registration record, allowing breeders and mare owners to make more informed decisions about genetic compatibility before breeding.
Summary
- Glycogen branching enzyme deficiency (GBED) is a fatal genetic disorder in Quarter Horses and American Paint Horses that is caused by gene mutation.
- Most GBED-affected foals are stillborn or aborted in late-term pregnancy. Foals that survive to term are weak, hypothermic and have difficulty standing and nursing.
- All known horses with GBED have passed away or been euthanized by 18 weeks of age.
- Responsible breeding and genetic testing can prevent GBED and help ensure the birth of a healthy foal.
References
- Wagner, M. L. et al. Allele Frequency and Likely Impact of the Glycogen Branching Enzyme Deficiency Gene in Quarter Horse and Paint Horse Populations. J Vet Intern Med. 2006. View Summary
- Valberg, S. J. et al. Glycogen-Branching Enzyme Deficiency. American Association of Equine Practitioners (AAEP). 2006.
- Finno, C. J. Equine diseases caused by known genetic mutations. Vet J. 2009. View Summary
- Tyron, R. C. Evaluation of allele frequencies of inherited disease genes in dubgroups of American Quarter Horses. J Am Vet Med Assoc. 2009. View Summary
- “Quarter Horse & Related Breeds...”. Quarter Horse & Related Breeds Disease Panel (5-panel plus). UC Davis, Veterinary Medicine; Veterinary Genetics Laboratory. n.d.
- Valberg, S. Glycogen Branching Enzyme Deficiency. College of Veterinary Medicine, Michigan State University. n.d.
- Valberg, S. J. et al. Glycogen branching enzyme deficiency in quarter horse foals. J Vet Intern Med. 2001. View Summary
- Valberg, S. J. A Review of the Diagnosis and Treatment of Rhabdomyolysis in Foals. American Association of Equine Practitioners (AAEP). 2002.
- Winter, J. et al. Glycogen Branching Enzyme Deficiency in an 11-week old German Quarter Horse filly. Pferdeheilkunde. 2013.
- Ward, T. L. et al. Glycogen branching enzyme (GBE1) mutation causing equine glycogen storage disease (IV). Mammalian Genome. 2004.
- Nollet, H. & Deprez, P. Hereditary skeletal muscle diseases in the horse. A review. Veterinary Quarterly. 2005. View Summary
