A mutation in the MATP gene causes the cream coat colour in the horse.
Abstract: In horses, basic colours such as bay or chestnut may be partially diluted to buckskin and palomino, or extremely diluted to cream, a nearly white colour with pink skin and blue eyes. This dilution is expected to be controlled by one gene and we used both candidate gene and positional cloning strategies to identify the "cream mutation". A horse panel including reference colours was established and typed for different markers within or in the neighbourhood of two candidate genes. Our data suggest that the causal mutation, a G to A transition, is localised in exon 2 of the MATP gene leading to an aspartic acid to asparagine substitution in the encoded protein. This conserved mutation was also described in mice and humans, but not in medaka.
Publication Date: 2003-02-28 PubMed ID: 12605854PubMed Central: PMC2732686DOI: 10.1186/1297-9686-35-1-119Google Scholar: Lookup
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- Journal Article
- Research Support
- Non-U.S. Gov't
Summary
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The research study identifies a single gene mutation that causes the cream coat color in horses.
Objective of Study
- The primary objective of this research was to identify the gene responsible for the dilution of basic coat colors in horses leading to cream colored coats.
Approach and Methodology
- Researchers used both candidate gene and positional cloning strategies to detect this variant, known as “cream mutation”.
- In the study a horse panel including various reference colors was created and typed for different genetic markers relevant to two candidate genes.
- Results suggested that the mutation responsible for the dilution is a G to A transition located in exon 2 of the MATP gene.
- This mutation causes an aspartic acid to asparagine substitution in the protein encoded by the gene.
- The same mutation was also found in mice and human genomes but was absent in Medaka, a small fish used as a model organism in genetics.
- The discovery of the mutation responsible for the cream coat in horses has important implications for our understanding of genetic control of coat color in mammals.
- This finding provides valuable insights for horse breeders, enabling them to make more informed breeding choices.
- Additionally, understanding these genetic mechanisms can contribute to human genetic research, especially because this mutation is also found in humans.
Results
Significance of the Findings
Cite This Article
APA
Mariat D, Taourit S, Guérin G.
(2003).
A mutation in the MATP gene causes the cream coat colour in the horse.
Genet Sel Evol, 35(1), 119-133.
https://doi.org/10.1186/1297-9686-35-1-119 Publication
Researcher Affiliations
- Laboratoire de génétique biochimique et de cytogénétique, Département de génétique animale, Institut national de la recherche agronomique, Centre de Recherche de Jouy, 78352 Jouy-en-Josas Cedex, France. mariat@diamant.jouy.inra.fr
MeSH Terms
- Animals
- Chromosome Mapping
- Chromosomes, Artificial, Bacterial
- DNA Primers / genetics
- Hair Color / genetics
- Horses / genetics
- Linkage Disequilibrium
- Microsatellite Repeats / genetics
- Mutation / genetics
- Proteins / genetics
- Skin Pigmentation / genetics
Citations
This article has been cited 37 times.- Li R, Wang Y, Liu Y, Li D, Tian Y, Liu X, Kang X, Li Z. Effects of SLC45A2 and GPNMB on Melanin Deposition Based on Transcriptome Sequencing in Chicken Feather Follicles.. Animals (Basel) 2023 Aug 12;13(16).
- Brown AR, Comai K, Mannino D, McCullough H, Donekal Y, Meyers HC, Graves CW, Seidel HS. A community-science approach identifies genetic variants associated with three color morphs in ball pythons (Python regius).. PLoS One 2022;17(10):e0276376.
- Avila F, Hughes SS, Magdesian KG, Penedo MCT, Bellone RR. Breed Distribution and Allele Frequencies of Base Coat Color, Dilution, and White Patterning Variants across 28 Horse Breeds.. Genes (Basel) 2022 Sep 13;13(9).
- Esdaile E, Kallenberg A, Avila F, Bellone RR. Identification of W13 in the American Miniature Horse and Shetland Pony Populations.. Genes (Basel) 2021 Dec 14;12(12).
- Kawakami T, Jensen MK, Slavney A, Deane PE, Milano A, Raghavan V, Ford B, Chu ET, Sams AJ, Boyko AR. R-locus for roaned coat is associated with a tandem duplication in an intronic region of USH2A in dogs and also contributes to Dalmatian spotting.. PLoS One 2021;16(3):e0248233.
- Crausaz M, Launois T, Smith-Fleming K, McCoy AM, Knickelbein KE, Bellone RR. DDB2 Genetic Risk Factor for Ocular Squamous Cell Carcinoma Identified in Three Additional Horse Breeds.. Genes (Basel) 2020 Dec 5;11(12).
- Nguyen TB, Paul RC, Okuda Y, LE TNA, Pham PTK, Kaissar KJ, Kazhmurat A, Bibigul S, Bakhtin M, Kazymbet P, Maratbek SZ, Meldebekov A, Nishibori M, Ibi T, Tsuji T, Kunieda T. Genetic characterization of Kushum horses in Kazakhstan based on haplotypes of mtDNA and Y chromosome, and genes associated with important traits of the horses.. J Equine Sci 2020 Oct;31(3):35-43.
- Le L, Escobar IE, Ho T, Lefkovith AJ, Latteri E, Haltaufderhyde KD, Dennis MK, Plowright L, Sviderskaya EV, Bennett DC, Oancea E, Marks MS. SLC45A2 protein stability and regulation of melanosome pH determine melanocyte pigmentation.. Mol Biol Cell 2020 Nov 15;31(24):2687-2702.
- Zheng X, Zhang B, Zhang Y, Zhong H, Nie R, Li J, Zhang H, Wu C. Transcriptome analysis of feather follicles reveals candidate genes and pathways associated with pheomelanin pigmentation in chickens.. Sci Rep 2020 Jul 21;10(1):12088.
- Tanaka J, Leeb T, Rushton J, Famula TR, Mack M, Jagannathan V, Flury C, Bachmann I, Eberth J, McDonnell SM, Penedo MCT, Bellone RR. Frameshift Variant in MFSD12 Explains the Mushroom Coat Color Dilution in Shetland Ponies.. Genes (Basel) 2019 Oct 19;10(10).
- Du J, Chen X, Wang J, Chen H, Yue W, Lu G, Wang C. Comparative skin transcriptome of two Oujiang color common carp (Cyprinus carpio var. color) varieties.. Fish Physiol Biochem 2019 Feb;45(1):177-185.
- Rothammer S, Kunz E, Seichter D, Krebs S, Wassertheurer M, Fries R, Brem G, Medugorac I. Detection of two non-synonymous SNPs in SLC45A2 on BTA20 as candidate causal mutations for oculocutaneous albinism in Braunvieh cattle.. Genet Sel Evol 2017 Oct 5;49(1):73.
- Wang Z, Meng G, Bai Y, Liu R, Du Y, Su L. Comparative transcriptome analysis provides clues to molecular mechanisms underlying blue-green eggshell color in the Jinding duck (Anas platyrhynchos).. BMC Genomics 2017 Sep 12;18(1):725.
- Deng L, Xu S. Adaptation of human skin color in various populations.. Hereditas 2018;155:1.
- Mack M, Kowalski E, Grahn R, Bras D, Penedo MCT, Bellone R. Two Variants in SLC24A5 Are Associated with "Tiger-Eye" Iris Pigmentation in Puerto Rican Paso Fino Horses.. G3 (Bethesda) 2017 Aug 7;7(8):2799-2806.
- Peters L, Humble E, Kröcker N, Fuchs B, Forcada J, Hoffman JI. Born blonde: a recessive loss-of-function mutation in the melanocortin 1 receptor is associated with cream coat coloration in Antarctic fur seals.. Ecol Evol 2016 Aug;6(16):5705-17.
- Jun J, Cho YS, Hu H, Kim HM, Jho S, Gadhvi P, Park KM, Lim J, Paek WK, Han K, Manica A, Edwards JS, Bhak J. Whole genome sequence and analysis of the Marwari horse breed and its genetic origin.. BMC Genomics 2014;15 Suppl 9(Suppl 9):S4.
- Metzger J, Tonda R, Beltran S, Agueda L, Gut M, Distl O. Next generation sequencing gives an insight into the characteristics of highly selected breeds versus non-breed horses in the course of domestication.. BMC Genomics 2014 Jul 4;15(1):562.
- Billington HE, McEwan NR. The Relationship between Parental Coat Colour and Prize-winning Palominos.. J Equine Sci 2009;20(4):73-7.
- Winkler PA, Gornik KR, Ramsey DT, Dubielzig RR, Venta PJ, Petersen-Jones SM, Bartoe JT. A partial gene deletion of SLC45A2 causes oculocutaneous albinism in Doberman pinscher dogs.. PLoS One 2014;9(3):e92127.
- Domyan ET, Guernsey MW, Kronenberg Z, Krishnan S, Boissy RE, Vickrey AI, Rodgers C, Cassidy P, Leachman SA, Fondon JW 3rd, Yandell M, Shapiro MD. Epistatic and combinatorial effects of pigmentary gene mutations in the domestic pigeon.. Curr Biol 2014 Feb 17;24(4):459-64.
- Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, de la Calle-Mustienes E, Casillas S, Rubio-Acero R, Melé M, Engelken J, Caceres M, Gomez-Skarmeta JL, Gut M, Bertranpetit J, Gut IG, Abello T, Eichler EE, Mingarro I, Lalueza-Fox C, Navarro A, Marques-Bonet T. The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild.. BMC Genomics 2013 May 31;14:363.
- Petersen JL, Mickelson JR, Rendahl AK, Valberg SJ, Andersson LS, Axelsson J, Bailey E, Bannasch D, Binns MM, Borges AS, Brama P, da Câmara Machado A, Capomaccio S, Cappelli K, Cothran EG, Distl O, Fox-Clipsham L, Graves KT, Guérin G, Haase B, Hasegawa T, Hemmann K, Hill EW, Leeb T, Lindgren G, Lohi H, Lopes MS, McGivney BA, Mikko S, Orr N, Penedo MC, Piercy RJ, Raekallio M, Rieder S, Røed KH, Swinburne J, Tozaki T, Vaudin M, Wade CM, McCue ME. Genome-wide analysis reveals selection for important traits in domestic horse breeds.. PLoS Genet 2013;9(1):e1003211.
- Sundström E, Imsland F, Mikko S, Wade C, Sigurdsson S, Pielberg GR, Golovko A, Curik I, Seltenhammer MH, Sölkner J, Lindblad-Toh K, Andersson L. Copy number expansion of the STX17 duplication in melanoma tissue from Grey horses.. BMC Genomics 2012 Aug 2;13:365.
- Reinders A, Sivitz AB, Ward JM. Evolution of plant sucrose uptake transporters.. Front Plant Sci 2012;3:22.
- Doan R, Cohen ND, Sawyer J, Ghaffari N, Johnson CD, Dindot SV. Whole-genome sequencing and genetic variant analysis of a Quarter Horse mare.. BMC Genomics 2012 Feb 17;13:78.
- McCue ME, Bannasch DL, Petersen JL, Gurr J, Bailey E, Binns MM, Distl O, Guérin G, Hasegawa T, Hill EW, Leeb T, Lindgren G, Penedo MC, Røed KH, Ryder OA, Swinburne JE, Tozaki T, Valberg SJ, Vaudin M, Lindblad-Toh K, Wade CM, Mickelson JR. A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies.. PLoS Genet 2012 Jan;8(1):e1002451.
- Komáromy AM, Rowlan JS, La Croix NC, Mangan BG. Equine Multiple Congenital Ocular Anomalies (MCOA) syndrome in PMEL17 (Silver) mutant ponies: five cases.. Vet Ophthalmol 2011 Sep;14(5):313-20.
- Ibarrola-Villava M, Fernandez LP, Alonso S, Boyano MD, Peña-Chilet M, Pita G, Aviles JA, Mayor M, Gomez-Fernandez C, Casado B, Martin-Gonzalez M, Izagirre N, De la Rua C, Asumendi A, Perez-Yarza G, Arroyo-Berdugo Y, Boldo E, Lozoya R, Torrijos-Aguilar A, Pitarch A, Pitarch G, Sanchez-Motilla JM, Valcuende-Cavero F, Tomas-Cabedo G, Perez-Pastor G, Diaz-Perez JL, Gardeazabal J, Martinez de Lizarduy I, Sanchez-Diez A, Valdes C, Pizarro A, Casado M, Carretero G, Botella-Estrada R, Nagore E, Lazaro P, Lluch A, Benitez J, Martinez-Cadenas C, Ribas G. A customized pigmentation SNP array identifies a novel SNP associated with melanoma predisposition in the SLC45A2 gene.. PLoS One 2011 Apr 29;6(4):e19271.
- Campana MG, Whitten CM, Edwards CJ, Stock F, Murphy AM, Binns MM, Barker GW, Bower MA. Accurate determination of phenotypic information from historic thoroughbred horses by single base extension.. PLoS One 2010 Dec 2;5(12):e15172.
- Menotti-Raymond M, David VA, Eizirik E, Roelke ME, Ghaffari H, O'Brien SJ. Mapping of the domestic cat "SILVER" coat color locus identifies a unique genomic location for silver in mammals.. J Hered 2009 Jul-Aug;100 Suppl 1(Suppl 1):S8-13.
- Cook D, Brooks S, Bellone R, Bailey E. Missense mutation in exon 2 of SLC36A1 responsible for champagne dilution in horses.. PLoS Genet 2008 Sep 19;4(9):e1000195.
- Bellone RR, Brooks SA, Sandmeyer L, Murphy BA, Forsyth G, Archer S, Bailey E, Grahn B. Differential gene expression of TRPM1, the potential cause of congenital stationary night blindness and coat spotting patterns (LP) in the Appaloosa horse (Equus caballus).. Genetics 2008 Aug;179(4):1861-70.
- Chowdhary BP, Raudsepp T. The horse genome derby: racing from map to whole genome sequence.. Chromosome Res 2008;16(1):109-27.
- Fukamachi S, Kinoshita M, Tsujimura T, Shimada A, Oda S, Shima A, Meyer A, Kawamura S, Mitani H. Rescue from oculocutaneous albinism type 4 using medaka slc45a2 cDNA driven by its own promoter.. Genetics 2008 Feb;178(2):761-9.
- Gunnarsson U, Hellström AR, Tixier-Boichard M, Minvielle F, Bed'hom B, Ito S, Jensen P, Rattink A, Vereijken A, Andersson L. Mutations in SLC45A2 cause plumage color variation in chicken and Japanese quail.. Genetics 2007 Feb;175(2):867-77.
- Brooks SA, Bailey E. Exon skipping in the KIT gene causes a Sabino spotting pattern in horses.. Mamm Genome 2005 Nov;16(11):893-902.
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