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Age-related methylation profiles of equine blood leukocytes in the RNASEL locus.
Abstract: Methylation profiles across three CpG islands of the RNASEL gene were determined in blood leukocyte samples of Anglo-Arabian and Hucul horses. Bisulfite sequencing revealed hypomethylated state of the RNASEL promoter coinciding with methylated CpG island placed inside the gene. Several CpG sites were identified for which the methylation state was influenced by DNA polymorphism. Two of them showed monoallelic methylation. One of the CpG sites revealed functional polymorphism. A number of partially methylated CpG sites have been observed in the promoter area of RNASEL, which were used for the comparison of breed- and age-related effects. Clone bisulfite sequencing of blood leukocyte samples collected at different ages from particular individuals of AA and HC breeds and, also, BSPCR sequencing of 50 samples of juvenile and old AA and HC horses revealed increased methylation in particular CpG sites during aging. The age-related heterogeneity of white blood cells was hypothesized as being one of the potential causes of observed variability of methylation profiles in the RNASEL promoter.
Publication Date: 2015-11-09 PubMed ID: 26553552PubMed Central: PMC4963465DOI: 10.1007/s13353-015-0323-4Google Scholar: Lookup The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Journal Article
Summary
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This research article discusses the age-related changes in the methylation profiles of the RNASEL gene in Anglo-Arabian and Hucul horses as detected from their blood leukocytes. The study found some CpG sites had methylation states affected by DNA polymorphisms, with increased methylation at specific CpG sites identified with aging.
Understanding Methylation and the RNASEL Gene
- The study focuses on the RNASEL gene, which codes for a protein that has significant roles in apoptosis (programmed cell death) and may function in the destruction of viral RNA.
- Methylation is a biological process where a methyl group is added to a molecule or substance. In this case, it refers to the addition of a methyl group to the DNA molecule at specific points called CpG sites.
- CpG sites are areas in the DNA sequence where a cytosine nucleotide is followed by a guanine nucleotide. These sites are particularly significant in gene regulation.
Study Procedure and Significant Findings
- The investigation employed bisulfite sequencing, an advanced method used for analyzing DNA methylation. This technique converted unmethylated cytosine residues to uracil, allowing researchers to differentiate between DNA sections that were originally methylated versus those that were not.
- The researchers found that the RNASEL promoter was hypomethylated or had fewer methyl groups, whereas a CpG island within the gene itself was methylated.
- Some CpG sites displayed significant DNA polymorphism effects on their methylation states, with two of these sites showing monoallelic methylation, i.e., methylation on one of two alleles.
- One CpG site exhibited functional polymorphism, which means the gene variant had an impact on the organism’s phenotype, potentially influencing the horse’s health or physical traits.
- The team also discovered several partially methylated CpG sites within the RNASEL promoter, which they used to elucidate breed- and age-related effects.
Relevance to Aging and Breed-Specific Traits
- By analyzing blood leukocyte samples from horses of different ages, the researchers found an increase in methylation at certain CpG sites related to age.
- This could potentially reflect the various biological changes that come with aging, including changes in the immune system function represented by the white blood cell variability.
- Furthermore, identifying breed-related differences in methylation patterns may contribute to a more comprehensive understanding of genetic and phenotypic diversity among horse breeds.
Conclusions and Future Directions
- The researchers hypothesize age-related heterogeneity of white blood cells could be a cause of the observed variability in methylation profiles in the RNASEL promoter.
- If confirmed by future research, this may provide valuable insights into age-related changes in gene expression and the role of methylation in regulating these processes. And, it could contribute to the knowledge of horse genetics and how methylation changes might affect horse health as they age.
Cite This Article
APA
Ząbek T, Semik E, Szmatoła T, Oklejewicz B, Fornal A, Bugno-Poniewierska M.
(2015).
Age-related methylation profiles of equine blood leukocytes in the RNASEL locus.
J Appl Genet, 57(3), 383-388.
https://doi.org/10.1007/s13353-015-0323-4 Publication
Researcher Affiliations
- National Research Institute of Animal Production, Krakowska 1, 32-083, Balice, Poland. tomasz.zabek@izoo.krakow.pl.
- National Research Institute of Animal Production, Krakowska 1, 32-083, Balice, Poland.
- National Research Institute of Animal Production, Krakowska 1, 32-083, Balice, Poland.
- Centre of Applied Biotechnology and Basic Sciences, University of Rzeszow, Sokołowska 26, 36-100, Kolbuszowa, Poland.
- National Research Institute of Animal Production, Krakowska 1, 32-083, Balice, Poland.
- National Research Institute of Animal Production, Krakowska 1, 32-083, Balice, Poland.
MeSH Terms
- Aging
- Animals
- Breeding
- CpG Islands
- DNA Methylation
- Endoribonucleases / genetics
- Epigenesis, Genetic
- Female
- Horses / genetics
- Leukocytes / metabolism
- Male
- Polymorphism, Genetic
- Promoter Regions, Genetic
- Sequence Analysis, DNA
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