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Topic:Breed Differences
Breed differences in horses encompass variations in physical characteristics, behavior, and physiological traits among different horse breeds. These differences arise from selective breeding practices aimed at enhancing specific attributes such as speed, endurance, strength, or temperament. Physical attributes can include variations in size, coat color, and conformation, while behavioral traits may involve differences in temperament and trainability. Physiological differences can affect metabolism, disease susceptibility, and performance capabilities. This topic includes peer-reviewed research studies and scholarly articles that explore the genetic, environmental, and historical factors contributing to breed differences, as well as their implications for equine management, health, and performance.
Phenotypic associations between young horse assessments and orthopaedic diagnoses in insured Swedish Warmblood horses. Lameness is the most common health problem in riding horses, and insurance data have previously been used to investigate the prevalence of orthopaedic diagnoses in Swedish Warmblood (SWB) horses. Young horse performance testing is an important part of the SWB breeding programme and contributes data to the genetic evaluation. Assessed traits from these tests have been shown to be useful indicator traits of performance in show jumping and dressage, but their associations with orthopaedic health have not previously been investigated. Objective: To study the associations between assessed traits fr...
Phenotypic and Genetic Evaluation of Morphometric and Dynamic Traits in Mangalarga Horses. Genetic evaluation of morphometric and locomotor traits supports objective selection, avoiding exclusive reliance on subjective methods that may fixate breed traits over functionality or cause undesirable indirect selection. Objective: To evaluate genetic and phenotypic parameters for morphometric and dynamic traits in horses of the Mangalarga breed. Methods: The pedigree included 212,361 animals born between 1919 and 2019. Phenotypic subsets for morphometric and dynamic traits comprised 54,617 and 45,010 horses, respectively, born between 1977 and 2019. Variance components were estimated usin...
Management practices and human-horse relationships are associated with horse personality traits. The human-horse relationship has evolved through centuries of domestication, shaping how horses are managed and interact with people. Horses show interindividual behavioural differences that constitute personality, with implications for welfare, management and human-horse interactions. Although equine personality has a genetic component, environmental and relational factors may influence its expression, yet effects of everyday management practices remain poorly understood. This study examined associations between owner-rated horse personality traits and human-controlled environmental and relat...
The Polish Konik Horse: A Multidisciplinary Review of Its Origin, Genetics, Ecology, Health, Behaviour and Reproductive Biology. The Polish Konik horse (PKH) is one of Europe's best-known native conservation breeds. Traditionally associated with the extinct Eurasian tarpan and conservation grazing, the breed has recently become the subject of multidisciplinary research encompassing genetics, ecology, health, behaviour and reproduction. This narrative review summarises current knowledge on the biological characteristics and contemporary scientific significance of the PKH. Literature published between 2005 and 2026 was identified through searches of PubMed, Scopus, Web of Science and Google Scholar and narratively synthes...
Comparative genomics of Standardbred horses reveals candidate regions under selection for harness racing performance. Harness racing performance in horses is a complex polygenic trait influenced by genetic background, breeding history, training, and environment. Understanding genomic patterns shaped by long-term artificial selection provides insights into performance-related traits and breed-specific genomic variation. Objective: This study aimed to characterize genomic differentiation, population structure, and candidate genomic regions potentially influenced by historical selection in Standardbred horses using comparative whole-genome sequencing involving diverse horse breeds. Methods: Whole-genome sequenci...
First-time description of MHC diversity in Straight Egyptian Arabian horses using immune-linked microsatellite markers. Understanding the immunogenetic structure of the major histocompatibility complex (MHC) in Arabian horses helps to clarify the population health structure-related phenotypes of this historically influential breed. Straight Egyptian (SE) Arabian horses, which fall under , are of global value but are limited in number, raising concerns about their distribution and the genetic diversity associated with immunity. In this study, we examined 57 Egyptian Arabian horses from two breeding programs: one in Germany (AR-DE) and the other in Qatar (AR-QA). Sixteen polymorphic intra-MHC microsatellite marke...
Characterization of Lipizzan Horse Population From Lipica Stud Using Molecular and Pedigree Data. In this study, we analysed genetic diversity, population structure and inbreeding in the Lipica Stud Farm population by integrating pedigree records, microsatellite (STR) and genome-wide SNP data generated using the GGP Equine 70K BeadChip. The dataset comprised 233 horses from the Lipica Stud Farm, which served as the reference population for comparisons of diversity estimates based on pedigree-, STR- and SNP data. The STR data were originally generated for routine parentage verification and were included here to compare inbreeding estimates based on pedigree, STR and genome-wide SNP data. Pe...
Risk Factors for Disease in Military Working Equines. Diseases can impact Military Working Equids (MWEs) readiness and limit days in service. The objectives of this study are to categorize diseases in MWEs and evaluate potential risk factors for disease. Methods: Pathology reports from MWEs from 2005 to 2025 were retrieved from the Joint Pathology Center archives. Disease processes with ≥5 cases were evaluated for potential risk factors, including MWE breed, sex, neuter status, geographic location, and age at sampling. Results: Diagnoses included inflammation (n = 30), neoplasia/proliferation (n = 24), within normal limits (n = 12),...
Body Condition, Metabolic Parameters and Semen Traits in Purebred Spanish Horses. The growing relevance of the Purebred Spanish horse has driven the extensive use of assisted reproductive technologies to preserve elite stallion genetics. Optimal reproductive performance is intrinsically linked to systemic health and high semen quality. This study aimed to evaluate the impact of body condition on the stallion's metabolic and endocrine profiles and their seminal parameters. Semen and blood samples were collected from 26 stallions (February-May in 2024-2025) whose body condition score (BCS) was assessed using the Henneke scale. They were classified into two groups, low BCS wit...
A Global Structural Variation Map Reveals Novel Variants for Body Conformation and Racing Ability in Horses. The selection of horses has been instrumental in shaping long-range mobility, advancing warfare strategies, and diversifying equine phenotypes. However, the structural variants (SVs) favored by this process remain largely unexplored. Utilizing high-fidelity Pacific Biosciences sequencing, we assembled three high-quality horse genomes, incorporating 237 Mb (9.48%) of novel sequences relative to the existing reference genome. These assemblies achieved an average Benchmarking Universal Single-Copy Orthologs completeness of 95.1%. By employing a graph-based approach, we genotyped 23,163 high-con...
Environmental and genetic effects on measured hock bone proportions in young Polish Warmblood horses undergoing performance test training for breeding horses. The hock bone proportions in young Polish Warmblood horses (69) were studied based on x-ray image measurements done during official breeding horse performance testing. Six measurements were used to identify 4 width and length proportion indices. The radiological examinations were done before and after horse training, which consists of work with or without the rider at walk, trot and canter (40-50min) with some light class (< 100cm) jumping (<12 jumps) 6 days a week. The training effect was investigated using analysis of variance (procedure MIXED, Statistical Analysis System). The statist...
Growth Performance, Milk Productivity, Productive Longevity, and Milk Composition of Mugalzhar Horses. The Mugalzhar horse is an important native breed of Kazakhstan, valued for its adaptability, milk production, and meat productivity under extensive pasture-based management. This study evaluated the relationships among first-lactation milk yield, productive longevity, lifetime milk production, growth, morphometric traits, and milk composition in the Mugalzhar horse breed using data from 100 mares with complete lifetime production records, 108 adult mares and 12 stallions for morphometric evaluation, and 68 foals (35 colts and 33 fillies) for growth analysis. The study was conducted on Mugalzha...
Differential shaping of equine gut microbiota structure and function by breed and feeding regimen. The gut microbiota plays an essential role in host energy metabolism and immune function. Horses are non-ruminant herbivores that rely heavily on hindgut microbial fermentation to meet their energy requirements. However, the relative contributions of host genetic background (breed) and environmental factors (feeding regimen and geographical location) to shaping the equine gut microbiota remain poorly understood. Unassigned: In this study, 16S rRNA gene sequencing and functional prediction analysis were performed on 139 equine fecal samples to systematically investigate the differential effects...
Preliminary investigation of ghrelin in horses and ponies: receptor expression and associations with prandial state, morphometry and signalment. The hormone ghrelin has had limited attention in Equidae, despite connections with appetite and metabolic health in other species. Ghrelin influences hunger and food intake, energy expenditure and storage, glucose metabolism, and thermoregulation, through its receptor-mediated effects on tissues and via interaction with other hormones. There are two circulating forms, acylated and des-acylated ghrelin, considered to have distinct effects on metabolism in other species. The aims of this study were to confirm the presence of ghrelin receptors in equine tissues, to validate an assay for the measu...
When genes meet money: Genotype-by-prize interaction in Quarter Horses. Barrel racing performance reflects a complex interplay among genetic merit, rider ability, training strategies, and competition-specific conditions. In practice, events differ substantially in their economic scale, and prize money can serve as a proxy for management intensity, rider expertise, and selection pressure. Objective: This study investigated whether economic stratification, represented by total prize money per event, is associated with changes in (co)variance components for barrel racing time in Brazilian Quarter Horses. Methods: A reaction-norm model was implemented using 349,262 ra...
Genomic diversity and historical legacy of Baroque horses: a living cultural heritage. Baroque horses represent a distinctive group of breeds that emerged mainly between the 16th and 18th centuries, shaped by the demands of European royalty and their courts. Although recognised as separate breeds, they share common ancestry, breeding goals, and historical gene flow. This study aimed to evaluate their genomic diversity, population structure, and admixture patterns. We analysed 1 160 individuals from eight breeds - Lipizzan, Old Kladruby Horse, Pura Raza Española, Lusitano, Friesian, Criollo, Peruvian Paso, and Puerto Rican Paso Fino - using 34 026 single-nucleotide polymorphis...
Mitochondrial DNA reveals high maternal diversity within a weak breed structure in native Kazakhstani horses. Understanding the genetic diversity and evolutionary history of domestic horses () is essential for reconstructing their population dynamics and origins. In this study, we analyzed mitochondrial DNA variation (COI and cytb) in six Kazakhstani horse populations representing four native breeds (Kazakh, Kostanay, Adai, and Mugalzhar) to assess genetic diversity, population structure, and evolutionary relationships within a broader phylogenetic framework. High haplotype diversity combined with low nucleotide diversity revealed population expansion and admixture. Population structure analyses revea...
Identification of Genomic Differences Resulting from Selection in Iranian Kurdish and Turkmen Horse Breeds Using Single Nucleotide Polymorphisms. Breakthroughs in genomic technologies have enabled the formulation of methods to identify genomic variation in domestic animal species. Detection of the variation is necessary because it is associated with breed characteristics and economic importance in domestic animal genetics. Unassigned: This study aimed to identify the genomic regions in Turkmen and Kurdish horse breeds that have been the target of different selections over many years. It also sought to locate the genes and Quantitative trait loci (QTL) in these regions that contributed to the differentiation of these two breeds or the di...
Polygenic Prediction of Equestrian Sport Discipline Among Horses Bred for Jumping and Dressage. Horses bred for different equestrian sports vary in physical, physiological and behavioural requirements. Characterising genetic markers associated with discipline provides an opportunity to improve identification of horses best suited to either jumping or dressage. Using a composite selection signals test, genomic regions under positive selection in German warmblood horses divergent for discipline were identified that contained lead SNPs proximal to or within genes with functions relevant to the requirements for jumping and dressage. Dressage genes function in tortuosity of movement (GRM5) an...
Phenotypic characterization through identification of gait and coat color phenotype of the Mountain Pleasure Horse. Phenotypic characterization of traits like gait and coat color is useful for minor breed identification and conservation. The Mountain Pleasure Horse (MPH) is a minor American breed as it is listed as threatened by the Livestock Conservancy. Objective: The study objective was to utilize phenotypic characterization for identifying gait and coat color phenotype of the MPH. Methods: Gait was characterized utilizing frame-by-frame analysis to identify spatiotemporal variables of purebred horses (n = 6) performing the flat walk and saddle rack. Coat color was characterized using coat color assi...
Integrative Advances in Equine Genomics From Reference Assemblies to Evolutionary History and Key Traits. Horses are major domestic animals and cultural symbols that have accompanied humans for millennia. They underpin transport, agriculture, warfare and sport, and also provide a model for studying domestication, complex traits and adaptive evolution. Recent work in equine genomics has now generated a much richer picture of how these roles are grounded in the genome. This review brings together advances in several connected areas: the construction and refinement of reference assemblies; genomic reconstructions of origin, domestication and dispersal; global and regional patterns of genetic diversit...
Comparative hematological and serum biochemical profiling of grassland Xichun and Xilingol horses. The Grassland Xichun horse is an emerging crossbred population developed from Xilingol mares and Thoroughbred stallions in Inner Mongolia, China, yet its blood physiological profile has not been systematically characterized. In this study, we compared 32 hematological and serum biochemical parameters between 177 Grassland Xichun horses and 35 Xilingol horses maintained under the same extensive grazing conditions. Following Benjamini-Hochberg FDR correction, 17 of 32 parameters differed significantly between breeds. Grassland Xichun horses showed markedly higher RBC count (9.145 vs 7.905 × 10...
Sport predispositions in warmblood horses: insights from Grand Prix competitions. The aim of this study was to pilot the assessment of sport predispositions in warmblood horse breeds, both domestic and foreign, and to evaluate factors influencing their performance. Data from 293 horses (725 starts) competing in national Grand Prix events with obstacle heights of 140-145 cm were analysed using general mixed models. The origins of Polish Halfbred Horses were examined, and correlations between results in the Young Horse Championships and later Grand Prix performance were assessed. Results showed that performance is significantly influenced by genetic factors, such as breed and...
A Breed-Specific SNP Panel With Higher Theoretical Exclusion Power and Practical Equivalence to International Standards for Parentage Testing in Pura Raza Española Horses. Accurate parentage assignment is essential for managing livestock breeding and genetic improvement. This study evaluated a breed-specific SNP panel (375 SNPs) for the Pura Raza Española (PRE) horse, comparing its performance against the traditional STR reference panel (18 microsatellite) and the international ISAG SNP core panel (378 SNPs) across population scenarios differing in levels of inbreeding and kinship. The PRE-specific SNPs were selected from the Axiom EQUIGENE array based on high genotyping reliability (call-rate > 99%), Mendelian error minimization, Hardy-Weinberg equilibr...
Similar locomotor patterns across Quarter Horse disciplines inform lameness assessment. Lineage-based selection is central to the Quarter Horse industry and is often justified by the assumption that morphology determines locomotor function. However, objective evidence linking static conformation to discipline-specific locomotor behaviour under standardised conditions remains limited. Objective: To investigate whether morphological differences among Quarter Horse disciplines are associated with distinct locomotor patterns or whether locomotor function converges across disciplines despite morphological variation. Methods: Cross-sectional. Methods: Barrel racing, reining, and ranch ...
Skull morphometry and sexual dimorphism in the Kyrgyz horse: A multivariate size-corrected analysis. This study aimed to evaluate sexual dimorphism in Kyrgyz horse skulls by separating size and shape components using Mosimann log-shape ratios, based on 18 linear cranial measurements recorded from 39 specimens. Raw linear data were analyzed alongside size-corrected Mosimann log-shape ratios to distinguish overall size from size-independent shape. Males showed larger raw means than females for all 18 variables, and 14 measurements remained significant after false-discovery-rate correction. The strongest raw differences involved skull length to nasale, total skull length, nasal length, breadth b...
Machine learning-based gait classification and genome-wide association identify a QTL for gait type in Colombian paso horses. Coordinated mammalian locomotion relies on spinal circuits where regulates strides and alternative gaits. However, does not explain differences between the Colombian paso horse breed's specialized gaits, Colombian trocha and Colombian trot. We used inertial sensors and machine learning to develop accurate phenotyping ( = 225 horses), before performing genome-wide association analysis ( = 85 horses, 670K array). We identified a 2.43 Mb quantitative trait locus (QTL) on ECA16, where haplotypes featuring lead variants (rs1147402472, = 1.95 × 10; rs1136628503, = 8.52 × 10) explained 48.6% of...
Genetic diversity of horses of the Sargarinsko-Alexeevskaya and Irmen cultures of the Ob-Irtysh region of Western Siberia and their genetic proximity to modern horses of indigenous breeds. Genetic diversity of horses of the Sargarinsko-Alexeevskaya and Irmen cultures of the Ob-Irtysh region of Western Siberia and their genetic proximity to modern horses of indigenous breeds. Генетическое разнообразие лошадей саргаринско-алексеевской и ирменской культур Западной Сибири и их генетическое родство с современными лошадьми аборигенных пород.
Physiological determinants of plasma biochemical parameters in horses: a structured review. The biochemical profile of horses is a cornerstone in equine clinical diagnostics, offering valuable insights into health status, disease progression, and physiological adaptation to internal and external stimuli. However, the interpretation of these biochemical parameters is far from straightforward, as they are subject to significant variation influenced by a range of physiological factors. Age, sex, breed, level of physical activity, nutritional condition, and reproductive status can all modulate baseline biochemical values, potentially leading to diagnostic inaccuracies if not properly con...
