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Topic:Breed Differences
Breed differences in horses encompass variations in physical characteristics, behavior, and physiological traits among different horse breeds. These differences arise from selective breeding practices aimed at enhancing specific attributes such as speed, endurance, strength, or temperament. Physical attributes can include variations in size, coat color, and conformation, while behavioral traits may involve differences in temperament and trainability. Physiological differences can affect metabolism, disease susceptibility, and performance capabilities. This topic includes peer-reviewed research studies and scholarly articles that explore the genetic, environmental, and historical factors contributing to breed differences, as well as their implications for equine management, health, and performance.
Phenotypic characterization through identification of gait and coat color phenotype of the Mountain Pleasure Horse. Phenotypic characterization of traits like gait and coat color is useful for minor breed identification and conservation. The Mountain Pleasure Horse (MPH) is a minor American breed as it is listed as threatened by the Livestock Conservancy. Objective: The study objective was to utilize phenotypic characterization for identifying gait and coat color phenotype of the MPH. Methods: Gait was characterized utilizing frame-by-frame analysis to identify spatiotemporal variables of purebred horses (n = 6) performing the flat walk and saddle rack. Coat color was characterized using coat color assi...
Integrative Advances in Equine Genomics From Reference Assemblies to Evolutionary History and Key Traits. Horses are major domestic animals and cultural symbols that have accompanied humans for millennia. They underpin transport, agriculture, warfare and sport, and also provide a model for studying domestication, complex traits and adaptive evolution. Recent work in equine genomics has now generated a much richer picture of how these roles are grounded in the genome. This review brings together advances in several connected areas: the construction and refinement of reference assemblies; genomic reconstructions of origin, domestication and dispersal; global and regional patterns of genetic diversit...
Comparative hematological and serum biochemical profiling of grassland Xichun and Xilingol horses. The Grassland Xichun horse is an emerging crossbred population developed from Xilingol mares and Thoroughbred stallions in Inner Mongolia, China, yet its blood physiological profile has not been systematically characterized. In this study, we compared 32 hematological and serum biochemical parameters between 177 Grassland Xichun horses and 35 Xilingol horses maintained under the same extensive grazing conditions. Following Benjamini-Hochberg FDR correction, 17 of 32 parameters differed significantly between breeds. Grassland Xichun horses showed markedly higher RBC count (9.145 vs 7.905 × 10...
Sport predispositions in warmblood horses: insights from Grand Prix competitions. The aim of this study was to pilot the assessment of sport predispositions in warmblood horse breeds, both domestic and foreign, and to evaluate factors influencing their performance. Data from 293 horses (725 starts) competing in national Grand Prix events with obstacle heights of 140-145 cm were analysed using general mixed models. The origins of Polish Halfbred Horses were examined, and correlations between results in the Young Horse Championships and later Grand Prix performance were assessed. Results showed that performance is significantly influenced by genetic factors, such as breed and...
A Breed-Specific SNP Panel With Higher Theoretical Exclusion Power and Practical Equivalence to International Standards for Parentage Testing in Pura Raza Española Horses. Accurate parentage assignment is essential for managing livestock breeding and genetic improvement. This study evaluated a breed-specific SNP panel (375 SNPs) for the Pura Raza Española (PRE) horse, comparing its performance against the traditional STR reference panel (18 microsatellite) and the international ISAG SNP core panel (378 SNPs) across population scenarios differing in levels of inbreeding and kinship. The PRE-specific SNPs were selected from the Axiom EQUIGENE array based on high genotyping reliability (call-rate > 99%), Mendelian error minimization, Hardy-Weinberg equilibr...
Similar locomotor patterns across Quarter Horse disciplines inform lameness assessment. Lineage-based selection is central to the Quarter Horse industry and is often justified by the assumption that morphology determines locomotor function. However, objective evidence linking static conformation to discipline-specific locomotor behaviour under standardised conditions remains limited. Objective: To investigate whether morphological differences among Quarter Horse disciplines are associated with distinct locomotor patterns or whether locomotor function converges across disciplines despite morphological variation. Methods: Cross-sectional. Methods: Barrel racing, reining, and ranch ...
Skull morphometry and sexual dimorphism in the Kyrgyz horse: A multivariate size-corrected analysis. This study aimed to evaluate sexual dimorphism in Kyrgyz horse skulls by separating size and shape components using Mosimann log-shape ratios, based on 18 linear cranial measurements recorded from 39 specimens. Raw linear data were analyzed alongside size-corrected Mosimann log-shape ratios to distinguish overall size from size-independent shape. Males showed larger raw means than females for all 18 variables, and 14 measurements remained significant after false-discovery-rate correction. The strongest raw differences involved skull length to nasale, total skull length, nasal length, breadth b...
Machine learning-based gait classification and genome-wide association identify a QTL for gait type in Colombian paso horses. Coordinated mammalian locomotion relies on spinal circuits where regulates strides and alternative gaits. However, does not explain differences between the Colombian paso horse breed's specialized gaits, Colombian trocha and Colombian trot. We used inertial sensors and machine learning to develop accurate phenotyping ( = 225 horses), before performing genome-wide association analysis ( = 85 horses, 670K array). We identified a 2.43 Mb quantitative trait locus (QTL) on ECA16, where haplotypes featuring lead variants (rs1147402472, = 1.95 × 10; rs1136628503, = 8.52 × 10) explained 48.6% of...
Genetic diversity of horses of the Sargarinsko-Alexeevskaya and Irmen cultures of the Ob-Irtysh region of Western Siberia and their genetic proximity to modern horses of indigenous breeds. Genetic diversity of horses of the Sargarinsko-Alexeevskaya and Irmen cultures of the Ob-Irtysh region of Western Siberia and their genetic proximity to modern horses of indigenous breeds. Генетическое разнообразие лошадей саргаринско-алексеевской и ирменской культур Западной Сибири и их генетическое родство с современными лошадьми аборигенных пород.
Physiological determinants of plasma biochemical parameters in horses: a structured review. The biochemical profile of horses is a cornerstone in equine clinical diagnostics, offering valuable insights into health status, disease progression, and physiological adaptation to internal and external stimuli. However, the interpretation of these biochemical parameters is far from straightforward, as they are subject to significant variation influenced by a range of physiological factors. Age, sex, breed, level of physical activity, nutritional condition, and reproductive status can all modulate baseline biochemical values, potentially leading to diagnostic inaccuracies if not properly con...
Comparative metagenomic analysis of gut microbiomes in Yunnan ponies and Dutch warmblood horses. The Yunnan pony is an officially protected pony breed in China. However, its gut microbiome characteristics remain largely unexplored. This study aimed to compare the gut microbiome and antibiotic resistance genes (ARGs) profiles between Yunnan ponies and Dutch warmblood horses. Unassigned: A total of 14 fresh fecal samples were collected from Yunnan ponies and Dutch warmblood horses. Metagenomic sequencing was employed to comprehensively analyze and compare the gut microbial composition, function, and ARGs profiles between the two breeds. Unassigned: The results showed no significant differen...
Whole Genome Data Uncover the Complex Origins of Polish Konik Horses. Polish Konik is a native horse breed from Poland often regarded as living descendants of the extinct Tarpan, which has been crucial to the breed's conservation status and cultural importance. To evaluate Polish Konik origins, we sequenced 12 whole genomes and compared them with 148 horse genomes, including those of modern breeds, ancient Polish horses, Przewalski horses, and the Tarpan. The ADMIXTURE results showed that Polish Konik is dominated by a single ancestral component, which is also common among ancient Polish samples and several primitive breeds. The PCA places Polish Konik in a comp...
Do Polish Konik Horses Find Soaked Hay to Be Palatable? Frequently, equine diseases necessitate the moistening or soaking of hay for the horses. It was assumed that this treatment would not reduce the willingness of the Polish Konik horses with low nutritional requirements to consume the hay. Furthermore, it was believed that moistening would increase the palatability of this feed. The aim of this study was to determine time and frequency parameters and the amount of unconsumed dry, moist, or soaked hay. The research material comprised 12 Polish Konik horses consuming either 1 kg of dry hay, 2.1 kg of moist hay, or 3.3 kg of soaked hay on three sub...
Genetic Diversity and Population Structure in Seven Lipizzan Populations Based on Microsatellite Genotyping. Lipizzan horses, bred for over four centuries, represent a unique genetic, cultural and historic resource. This study assessed genetic diversity and population structure across seven European Lipizzan populations, with emphasis on the Bosnia and Herzegovina population. A total of 547 Lipizzan horses were genotyped using 12 microsatellite markers. The parameters of genetic variability, admixture level and migration rate were calculated. The mean number of alleles, effective number of alleles and Shannon's information index were 5.78, 3.24 and 1.31, respectively. The average fixation indices wer...
CXCL16-associated genetic susceptibility to equine viral arteritis in export-bound horses from Spain. Equine viral arteritis (EVA) remains a relevant health and economic concern due to the ability of some infected stallions to establish long-term persistent infection with equine arteritis virus (EAV). Allelic variation in the CXCL16 gene has been identified as a determinant of susceptibility or resistance to the carrier state, positioning genotyping as a useful tool for risk-based reproductive and health management. Objective: To characterise the distribution of CXCL16 genotypes in export-bound horses from Spain and to assess the utility of CXCL16 genotyping for EVA prevention and control. Met...
A Comparison of the Performance of Horses from the International WBFSH Rankings in Dressage, Jumping and Eventing Based on Their Sex, Age, Proportion of Thoroughbred Genes and Affiliation to the Studbook. The aim of the research was to assess how the selected factors could influence the performance of the best horses in dressage, jumping and eventing competitions. The research was based on the Studbook Rankings published by the World Breeding Federation for Sport Horses from 2019 to 2024. Our analysis shows a statistically significant effect of each of the observed factors in at least one discipline. The leading factor in all disciplines was studbook affiliation. The Belgian warmblood, German Sport Horse, Hanoverian, Royal Dutch Sport Horse, Oldenburg and Westphalian studbooks are represented a...
Factors influencing gestation length in Mares in the Tiaret region, Algeria. Gestation length is a key parameter in equine reproductive management, yet its variability remains poorly documented in Barb and Arabian mares under Algerian conditions. Objective: This study aims to determine gestation length in mares and to assess the influence of various factors, including breed, year of mating, mating month, mare age, parity, reproductive status, stallion and the foal's sex on gestation duration. Methods: A total of 133 mares from the National Stud Farm of Tiaret (Algeria) were monitored over the period 2021-2024. Results: The mean gestation length was 332.5 days (range: 3...
Machine Learning-Based Genome-Wide Association Study Reveals Genetic Loci Associated with Body Measurement Traits in Yili Horses. Body measurement traits are key indicators for evaluating growth performance, production potential, and breeding value in Yili horses. However, studies investigating the association between body measurement traits and mutation loci in Yili horses remain limited. In this study, 255 adult Yili mares were used as the study population, including 152 speed-type and 103 meat-type individuals. Whole-genome resequencing was performed, and four phenotypic traits and body weight were measured. A mixed linear model (MLM)-based genome-wide association study (GWAS) was conducted using GEMMA (v 0.98.5), inc...
Application of 3D scanning for modeling and morphometric assessment of Mangalarga Marchador Horses. Morphometric traits are essential for assessing conformation, locomotion, and selection in equine breeding programs. However, manual measurements are laborious, require physical contact, and may cause stress to animals, highlighting the need for alternative technologies. Objective: This study evaluated the use of a portable 3D scanner for three-dimensional modeling and morphometric assessment of Mangalarga Marchador horses. Methods: Fifty-two adult horses were measured using manual and 3D scanning methods to assess ten morphometric traits: withers height (WH), hip height (HH), head length (HL)...
Audio-Based Characterization of Gait Parameters in Mangalarga Marchador, Campolina, and Piquira Horses Using Deep Learning. The evaluation of biomechanical parameters in four-beat gaited horses remains limited by the subjectiveness and complexity of current standard methods. Through a deep learning approach, we aimed to infer dissociation % using only acoustic signals. A total of 268 audio samples were extracted from publicly available videos featuring three Brazilian horse breeds (Mangalarga Marchador, Campolina, and Piquira) performing marcha batida and marcha picada. Acoustic features, including root mean square energy (RMS), zero-crossing rate (ZCR), and 13 Mel-frequency cepstral coefficients (MFCCs), were extr...
Genomic diversity and structure in arabian horses revealed by whole-genome sequencing: establishment of an allele frequency database of common genetic variation. BACKGROUND: The Arabian horse is a culturally and historically influential breed that has contributed to the development of many modern horse populations. However, genomic resources for this breed remain limited, particularly population-level allele frequency datasets that support studies of genetic diversity, selection, and disease. The aim of this study was to generate a comprehensive allele frequency database for Arabian horses using representative sampling and high-coverage whole-genome sequencing. RESULTS: We generated the first publicly available allele frequency database for the Arabian...
Milk productivity of mares. To determine the milk productivity of Kazakh horses of the Adai region in variants of selection and technological indicators of milk for the production of cumus in the conditions of the Mangyshlak peninsula of the Republic of Kazakhstan. The object of the study was the Kazakh horse of the Adai intra-breed type at "Taushyk" LLP (Tupkaragan District, Mangystau Region). Mares with a more pronounced milk production were selected and analyzed . they have investigated the quality of milk for further processing. A characteristic feature of the dynamics of milk sugar content during lactation has been ...
Morphometric Characterization and Preliminary Heritability Estimates of Body Measurements in the Polish Konik Populations. The objective of this paper is to demonstrate the morphometric diversity of 172 Polish Koniks from the largest Polish breeding centers and to assess their genetic diversity by estimating the effective population size () and heritabilities () of the studied traits. The animals were bred under a stable housing system. Horses of both sexes aged 3 to 24 years were analyzed. Each horse was characterized with 40 metric traits. Multifactorial analyses (PCA, DA) and the REML method were applied to reveal the exterior differentiation and the development of distinct morphometric types. The findings esta...
Genetic diversity in the Criollo Argentino horse from SNP array data. The Criollo Argentino horse is a national symbol and a heritage breed that represents both cultural identity and a key component of traditional production systems in Argentina. This study aimed to assess the genetic differentiation of the Criollo Argentino relative to other horse breeds and to infer potential factors shaping its diversity through the genomic analysis of 24 representative animals. Samples were genotyped using a medium-density SNP array containing 65,157 markers, and genetic diversity analyses were conducted across autosomal SNP sets filtered under different criteria. Contempora...
An overview of the livestock microbiome: sheep, horses, cattle, camels, and chickens. The animal microbiome plays a crucial role in determining the health, productivity, and welfare of livestock species, including sheep, horses, cattle, camel, and chicken. These animal species were selected due to the high consumption of their products in Kazakhstan. Enhancing their productivity, while maintaining the safety and quality of meat and milk derived from them, represents a pressing research priority. This review article includes current research on the composition, diversity, and purposes of the microbiota found within different organ systems of these species. This study focuses on ...
United States stakeholder insights on genetic testing for equine health and breeding. The S1094 United States Department of Agriculture Multistate Research Project is a collaborative effort utilizing equine genetics and genomics to improve horse health and well-being. It also provides educational resources and genetic testing tools to equine industry stakeholders. Objective: A survey assessed the knowledge, priorities, and information sources of U.S. horse owners and enthusiasts regarding equine genetic testing to inform future outreach and research efforts. Methods: An online survey was distributed from March to October 2024, targeting horse owners and enthusiasts across the U...
DMRT3 Gene Variations in Horse Breeds Selected for Gaited Movement – Established Research and Novel Findings. The DMRT3 gene, often referred to as the "gait keeper," plays a key role in controlling alternative gaits in horses, such as tölt and pace. This study aimed to determine the frequency of known and to screen for potential novel polymorphisms within the second exon of the DMRT3 gene. Methods: A total of 244 blood or hair samples were collected from representative individuals of the six horse breeds: gaited (Icelandic Horse, French Trotter), non-gaited (Arabian Horse, Malopolski Horse), and pony breeds (Welsh Pony, Shetland Pony). Methods: The second exon of the DMRT3 gene analyzed using Sanger ...
Histological properties of the distal sesamoidean impar ligament in racing Thoroughbreds and Quarter horses. The distal sesamoidean impar ligament (DSIL) is a key component of the equine podotrochlear apparatus, yet its role in conditions such as caudal heel pain and navicular syndrome remains poorly understood. The objective of this study was to characterize the histological properties of the DSIL and evaluate how it is influenced by breed and age. Eighty-four cadaveric forelimb DSIL samples were collected from young, athletic Quarter horses (QHs), Thoroughbreds (TBs), and older, retired Quarter horses. Samples were stained and assessed for vessel size and count, number of nerve fascicles, and the r...
An increased number of heterozygous calls in the AxiomTM Equine Genotyping Array. Single nucleotide polymorphism (SNP) arrays are commonly used in livestock genetics to investigate complex traits including genome-wide associations and fine mapping, genomic prediction and genetic diversity analyses. In a European equine diversity study, we analysed the AxiomTM Equine 670K SNP genotype data from 2,768 equids representing 20 horse breeds and one donkey breed. Using a strict detection setting to identify genome-wide runs of homozygosity (ROH), 169 purebred horses displayed fewer ROH segments than F1 crosses. Under medium and relaxed settings, ROH counts increased, while some ho...
Population Structure and Genetic Diversity Among Lipizzan Mare Families in Hungary Based on Microsatellite Genotyping. The conservation of genetic diversity in historically structured horse breeds requires fi-ne-scale population genetic evaluation beyond conventional pedigree-based approaches. The present study assessed genetic diversity, population structure, and mare family differentiation in a Lipizzan horse population using 16 ISAG/FAO-recommended microsatellite markers. A total of 172 mares representing 29 mare families were genotyped. All loci were polymorphic, with a mean number of alleles per locus of 6.69 and a mean effective number of alleles of 3.56. The average polymorphism information content (PIC...
