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Animal genetics2012; 44(1); 53-61; doi: 10.1111/j.1365-2052.2012.02371.x

Autosomal genetic diversity in non-breed horses from eastern Eurasia provides insights into historical population movements.

Abstract: Many events in the history of eastern Eurasia, including the process of domestication itself, the initial spread of domestic horses and subsequent movements, are believed to have affected the genetic structure of domestic horse populations in this area. We investigated levels of within- and between-population genetic diversity in 'non-breed horses' (working horses sampled in remote areas) from 17 locations in Asia and parts of Eastern Europe, using 26 autosomal microsatellite loci. Non-breed horses have not been subject to the same intensity of artificial selection and closed breeding as have most breed animals and are thus expected to better reflect the population history of domestic horses. Despite geographic distances of between 300 and 7000 km between sampling locations, pairwise F (ST) was very low (range: <0.001 to -0.033), suggesting historically high levels of gene flow. Our analyses of non-breed horses revealed a pattern of isolation by distance and a significant decline in genetic diversity (expected heterozygosity and allelic richness) from east to west, consistent with a westward expansion of horses out of East Asia. Although the timing of this putative expansion is unclear, our results highlight the benefit of studying animals that do not belong to particular breeds when investigating aspects of a population's history.
Publication Date: 2012-05-21 PubMed ID: 22607477DOI: 10.1111/j.1365-2052.2012.02371.xGoogle Scholar: Lookup
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  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

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The study examines genetic variations among non-breed horses in Eastern Eurasia to trace historical population movements. Despite geographical separation, the genetic diversity is quite similar, suggesting high levels of gene flow, followed by a revealed decline of diversity from east to west, implying a westward expansion of horses from East Asia.

Research Overview

In this research paper, the scientists have studied genetic diversity in a type of horse that they refer to as ‘non-breed horses’. Non-breed horses are working horses found in remote areas, and they are not part of an established breed, nor have they been subjected to as much artificial selection and closed breeding as most established breeds have. They are hypothesized to more accurately reflect the historical population movements of horses.

Methodology

  • The researchers sampled non-breed horses from 17 different locations in Asia and portions of Eastern Europe.
  • They assessed the genetic diversity within and between these horse populations based on 26 autosomal microsatellite loci, which are specific sections of DNA that can be used to measure genetic variance.

Results

  • The research demonstrated relatively slight variations in genetic diversity among the sampled populations, despite the wide geographical distances between them (from 300 to 7000 km).
  • The low divergence indicated a historical prevalence of high gene flow, meaning these horse populations have historically been well mixed and not isolated from each other.

Interpretation

  • The research revealed a pattern of isolation by distance and significant decline in genetic diversity (measured by expected heterozygosity and allelic richness) from east to west.
  • This finding suggests a westward expansion of horse populations from Eastern Asia, meaning horses originally expanded from east to west across Eurasia.
  • The exact timing was not defined, but the pattern was consistent across the studied locations.

Significance

The findings emphasize the value of studying non-breed animals for tracing historical population patterns. As they are not subjected to substantial artificial selection and closed breeding, their genetic makeup more accurately reflects the species’ natural history and migration patterns. This approach provides a valuable framework for studying the population history of other domestic animals.

Cite This Article

APA
Warmuth V, Manica A, Eriksson A, Barker G, Bower M. (2012). Autosomal genetic diversity in non-breed horses from eastern Eurasia provides insights into historical population movements. Anim Genet, 44(1), 53-61. https://doi.org/10.1111/j.1365-2052.2012.02371.x

Publication

ISSN: 1365-2052
NlmUniqueID: 8605704
Country: England
Language: English
Volume: 44
Issue: 1
Pages: 53-61

Researcher Affiliations

Warmuth, Vera
  • Department of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 3EJ, UK. vmw23@cam.ac.uk
Manica, Andrea
    Eriksson, Anders
      Barker, Graeme
        Bower, Mim

          MeSH Terms

          • Alleles
          • Animals
          • Asia
          • Chromosomes, Mammalian / genetics
          • Europe, Eastern
          • Genotype
          • Horses / genetics
          • Microsatellite Repeats
          • Multiplex Polymerase Chain Reaction
          • Phylogeography
          • Polymorphism, Genetic
          • Species Specificity

          Grant Funding

          • BB/E527604/1 / Biotechnology and Biological Sciences Research Council
          • BB/H005854/1 / Biotechnology and Biological Sciences Research Council

          Citations

          This article has been cited 7 times.
          1. Klecel W, Martyniuk E. From the Eurasian Steppes to the Roman Circuses: A Review of Early Development of Horse Breeding and Management. Animals (Basel) 2021 Jun 22;11(7).
            doi: 10.3390/ani11071859pubmed: 34206575google scholar: lookup
          2. Myćka G, Musiał AD, Stefaniuk-Szmukier M, Piórkowska K, Ropka-Molik K. Variability of ACOX1 Gene Polymorphisms across Different Horse Breeds with Regard to Selection Pressure. Animals (Basel) 2020 Nov 27;10(12).
            doi: 10.3390/ani10122225pubmed: 33260884google scholar: lookup
          3. Al Abri MA, Holl HM, Kalla SE, Sutter NB, Brooks SA. Whole genome detection of sequence and structural polymorphism in six diverse horses. PLoS One 2020;15(4):e0230899.
            doi: 10.1371/journal.pone.0230899pubmed: 32271776google scholar: lookup
          4. Metzger J, Karwath M, Tonda R, Beltran S, Águeda L, Gut M, Gut IG, Distl O. Runs of homozygosity reveal signatures of positive selection for reproduction traits in breed and non-breed horses. BMC Genomics 2015 Oct 9;16:764.
            doi: 10.1186/s12864-015-1977-3pubmed: 26452642google scholar: lookup
          5. Metzger J, Tonda R, Beltran S, Agueda L, Gut M, Distl O. Next generation sequencing gives an insight into the characteristics of highly selected breeds versus non-breed horses in the course of domestication. BMC Genomics 2014 Jul 4;15(1):562.
            doi: 10.1186/1471-2164-15-562pubmed: 24996778google scholar: lookup
          6. Petersen JL, Mickelson JR, Cothran EG, Andersson LS, Axelsson J, Bailey E, Bannasch D, Binns MM, Borges AS, Brama P, da Câmara Machado A, Distl O, Felicetti M, Fox-Clipsham L, Graves KT, Guérin G, Haase B, Hasegawa T, Hemmann K, Hill EW, Leeb T, Lindgren G, Lohi H, Lopes MS, McGivney BA, Mikko S, Orr N, Penedo MC, Piercy RJ, Raekallio M, Rieder S, Røed KH, Silvestrelli M, Swinburne J, Tozaki T, Vaudin M, M Wade C, McCue ME. Genetic diversity in the modern horse illustrated from genome-wide SNP data. PLoS One 2013;8(1):e54997.
            doi: 10.1371/journal.pone.0054997pubmed: 23383025google scholar: lookup
          7. Boozarjomehri Amnieh S, Hassanpour A, Moghaddam S, Sakhaee F, Ropka-Molik K. Study of Variation of ACOX1 Gene Among Different Horse Breeds Maintained in Iran. Animals (Basel) 2024 Dec 10;14(24).
            doi: 10.3390/ani14243566pubmed: 39765470google scholar: lookup