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Journal of equine veterinary science2026; 164; 106053; doi: 10.1016/j.jevs.2026.106053

Chromosomal chaos: understanding aneuploidy associated with assisted reproductive technologies.

Abstract: Pregnancy loss remains a significant challenge for the equine breeding industry, with substantial economic and management consequences. Chromosomal abnormalities have emerged as a central driver of pregnancy loss, particularly during early gestation, highlighting the need to better understand the etiology of this inherent genetic instability. Concurrently, the rapid expansion of assisted reproductive technologies (ART) offers promise for improving equine reproductive efficiency alongside the traditional practice of natural cover. However, the increasing use of in vitro embryo production (IVP) raises important questions regarding the genetic stability and long-term health of resulting offspring. Here we extensively review the mechanistic basis, putative origins, and subtypes of genetic abnormalities, underscoring specific biases in points of lethality during pregnancy loss. Although evidence remains limited, we also examine emerging data suggesting distinct patterns of developmental tolerance and genetic instability between IVP and in vivo derived (IVD) embryos. Notably, available studies report complex and widespread genomic disruptions associated with IVP embryos, underscoring the need for systematic characterization of genetic profiles and offspring outcomes across breeding modalities. Decoding the genetic consequences of ART represents an important frontier in equine reproduction research, with broad implications for optimizing ART protocols and maintaining healthy and sustainable equine lineages.
Publication Date: 2026-06-17 PubMed ID: 42309330DOI: 10.1016/j.jevs.2026.106053Google Scholar: Lookup
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Summary

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Overview

  • This article reviews the role of chromosomal abnormalities in pregnancy loss in horses, particularly focusing on the impact of assisted reproductive technologies (ART) such as in vitro embryo production (IVP) on genetic stability and offspring health.

Background and Importance

  • Pregnancy loss in horses poses significant economic and management challenges to the equine breeding industry.
  • Chromosomal abnormalities, or aneuploidies, are recognized as a major factor causing early pregnancy loss in equines.
  • Understanding the causes (etiology) and mechanisms behind these genetic instabilities is crucial for improving reproductive success.

Assisted Reproductive Technologies (ART) in Equine Breeding

  • ART includes methods like in vitro embryo production (IVP), which is the fertilization and early development of embryos outside the mare’s body.
  • IVP offers potential advantages by enhancing reproduction efficiency compared to traditional natural cover.
  • However, the widespread adoption of IVP raises concerns about whether embryos produced via ART have altered genetic stability compared to those conceived naturally (in vivo derived or IVD embryos).

Genetic Abnormalities and Their Mechanisms

  • The review examines different subtypes of chromosomal abnormalities linked with pregnancy loss, focusing on points in development when these abnormalities cause embryo lethality.
  • It discusses how certain genetic irregularities may lead to early embryonic failure, contributing to pregnancy loss.
  • Potential mechanisms for how these abnormalities arise include errors during meiosis (gamete formation) and mitosis (early cell divisions), which may be influenced by ART protocols.

Differences Between IVP and In Vivo Derived Embryos

  • Emerging data suggest that embryos produced through IVP may display distinct patterns of genetic instability compared to naturally conceived embryos.
  • There may be differential developmental tolerance, meaning IVP embryos might be more susceptible to carrying chromosomal abnormalities yet still develop to certain stages.
  • Studies report that IVP embryos often exhibit complex and widespread genomic disruptions, potentially affecting long-term health outcomes in resulting foals.

Implications and Future Directions

  • The findings highlight a critical need for systematic genetic profiling of embryos produced via different breeding modalities.
  • Understanding the genetic consequences of ART is key to optimizing protocols to minimize chromosomal abnormalities and associated pregnancy losses.
  • Further research will help safeguard the health and sustainability of equine lineages by balancing reproductive technology use with genetic integrity.
  • This area represents a growing frontier in equine reproductive biology, with implications that extend to improving breeding efficiency and animal welfare.

Cite This Article

APA
McKane AM, Chauhan IV, Miller D, Ghosh S, Das A, de Mestre AM. (2026). Chromosomal chaos: understanding aneuploidy associated with assisted reproductive technologies. J Equine Vet Sci, 164, 106053. https://doi.org/10.1016/j.jevs.2026.106053

Publication

ISSN: 0737-0806
NlmUniqueID: 8216840
Country: United States
Language: English
Volume: 164
Pages: 106053
PII: S0737-0806(26)00288-1

Researcher Affiliations

McKane, Anna Maria
  • Baker Institute for Animal Health, Cornell University, Ithaca, NY, USA; Department of Biomedical and Translational Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Chauhan, Isha Vijay
  • Baker Institute for Animal Health, Cornell University, Ithaca, NY, USA.
Miller, Donald
  • Baker Institute for Animal Health, Cornell University, Ithaca, NY, USA.
Ghosh, Sharmila
  • Baker Institute for Animal Health, Cornell University, Ithaca, NY, USA.
Das, Arunika
  • Department of Biomedical and Translational Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA; Cornell Reproductive Sciences Center, Cornell University, Ithaca, NY, USA.
de Mestre, Amanda M
  • Baker Institute for Animal Health, Cornell University, Ithaca, NY, USA; Cornell Reproductive Sciences Center, Cornell University, Ithaca, NY, USA. Electronic address: amm43@cornell.edu.

MeSH Terms

  • Animals
  • Reproductive Techniques, Assisted / veterinary
  • Reproductive Techniques, Assisted / adverse effects
  • Aneuploidy
  • Horses / genetics
  • Female
  • Pregnancy

Conflict of Interest Statement

Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Citations

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