Analyze Diet
Biophysical journal2002; 83(5); 2845-2855; doi: 10.1016/S0006-3495(02)75293-4

Comparative study of tyrosine radicals in hemoglobin and myoglobins treated with hydrogen peroxide.

Abstract: The reactions of hydrogen peroxide with human methemoglobin, sperm whale metmyoglobin, and horse heart metmyoglobin were studied by electron paramagnetic resonance (EPR) spectroscopy at 10 K and room temperature. The singlet EPR signal, one of the three signals seen in these systems at 10 K, is characterized by a poorly resolved, but still detectable, hyperfine structure that can be used to assign it to a tyrosyl radical. The singlet is detectable as a quintet at room temperature in methemoglobin with identical spectral features to those of the well characterized tyrosyl radical in photosystem II. Hyperfine splitting constants found for Tyr radicals were used to find the rotation angle of the phenoxyl group. Analysis of these angles in the crystal structures suggests that the radical resides on Tyr151 in sperm whale myoglobin, Tyr133 in soybean leghemoglobin, and either alphaTyr42, betaTyr35, or betaTyr130 in hemoglobin. In the sperm whale metmyoglobin Tyr103Phe mutant, there is no detectable tyrosyl radical present. Yet the rotation angle of Tyr103 (134 degrees) is too large to account for the observed EPR spectrum in the wild type. Tyr103 is the closest to the heme. We suggest that Tyr103 is the initial site of the radical, which then rapidly migrates to Tyr151.
Publication Date: 2002-11-05 PubMed ID: 12414716PubMed Central: PMC1302368DOI: 10.1016/S0006-3495(02)75293-4Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
  • Comparative Study
  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.

This research article examines how hydrogen peroxide interacts with different types of hemoglobin and myoglobins, commonly found in the body, by using electron paramagnetic resonance (EPR) spectroscopy. The researchers demonstrate the complex formation and movement of tyrosine radicals in these proteins.

Methodology

  • The researchers studied the reactions of hydrogen peroxide with three different hemoglobin and myoglobin proteins: human methemoglobin, sperm whale metmyoglobin, and horse heart metmyoglobin. They chose these proteins to represent a range of hemoglobins and myoglobins.
  • The reactions were further examined at two temperatures: 10 K (-263.15 degrees Celsius) and room temperature.
  • Using electron paramagnetic resonance (EPR) spectroscopy, a technique that identifies species with unpaired electrons (like radicals), the scientists were able to look closely at the reactions between the proteins and hydrogen peroxide.

Findings

  • The scientists identified a distinct EPR signal which they attributed to a tyrosyl (tyrosine) radical, a reactive molecule found in proteins.
  • This singlet EPR signal indicated a tyrosyl radical present in the proteins at 10 degrees Kelvin and at room temperature.
  • They found that the radical’s signal matches the known characteristics of a tyrosyl radical present in photosystem II, a part of light-dependent reactions in photosynthesis, reinforcing the identification of the radical as a tyrosyl radical.
  • In further investigations, they used the spectral characteristics of these tyrosyl radicals to determine the rotation angle of the phenoxyl group, a substructure commonly found in organic molecules.

Location of the tyrosyl radical

  • Their data analysis suggested that the tyrosyl radical sits at a specific location (Tyr103 initially morphing into Tyr151) on sperm whale metmyoglobin. This movement from Tyr103 to Tyr151 suggests a migration of the radical within the protein structure.
  • In the soybean leghemoglobin, the radical was predicted to reside at Tyr133 position.
  • In the case of human hemoglobin, this radical could be on either alphaTyr42, betaTyr35, or betaTyr130.

Implications

  • The research provides valuable insight into the chemistry and biochemistry of these proteins, their reaction patterns, and the characteristics of the tyrosyl radicals. This can be helpful for understanding disease mechanisms possibly related to oxidative stress where reactive species like radicals play a crucial role.

Cite This Article

APA
Svistunenko DA, Dunne J, Fryer M, Nicholls P, Reeder BJ, Wilson MT, Bigotti MG, Cutruzzolà F, Cooper CE. (2002). Comparative study of tyrosine radicals in hemoglobin and myoglobins treated with hydrogen peroxide. Biophys J, 83(5), 2845-2855. https://doi.org/10.1016/S0006-3495(02)75293-4

Publication

ISSN: 0006-3495
NlmUniqueID: 0370626
Country: United States
Language: English
Volume: 83
Issue: 5
Pages: 2845-2855

Researcher Affiliations

Svistunenko, Dimitri A
  • Department of Biological Sciences, Central Campus, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, UK. svist@essex.ac.uk
Dunne, Jacqueline
    Fryer, Michael
      Nicholls, Peter
        Reeder, Brandon J
          Wilson, Michael T
            Bigotti, Maria Giulia
              Cutruzzolà, Francesca
                Cooper, Chris E

                  MeSH Terms

                  • Animals
                  • Arabidopsis
                  • Electron Spin Resonance Spectroscopy
                  • Free Radicals
                  • Hemoglobins / chemistry
                  • Horses
                  • Humans
                  • Hydrogen Peroxide / pharmacology
                  • Iron
                  • Myoglobin / chemistry
                  • Photosynthesis
                  • Protein Conformation
                  • Temperature
                  • Tyrosine / chemistry
                  • Whales

                  References

                  This article includes 27 references
                  1. Svistunenko DA, Sharpe MA, Nicholls P, Wilson MT, Cooper CE. A new method for quantitation of spin concentration by EPR spectroscopy: application to methemoglobin and metmyoglobin.. J Magn Reson 2000 Feb;142(2):266-75.
                    pubmed: 10648142doi: 10.1006/jmre.1999.1935google scholar: lookup
                  2. KING NK, WINFIELD ME. The mechanism of metmyoglobin oxidation.. J Biol Chem 1963 Apr;238:1520-8.
                    pubmed: 14032861
                  3. Vithayathil AJ, Ternberg JL, Commoner B. Changes in electron spin resonance signals of rat liver during chemical carcinogenesis.. Nature 1965 Sep 18;207(5003):1246-9.
                    pubmed: 4287143doi: 10.1038/2071246a0google scholar: lookup
                  4. Blumberg WE, Peisach J, Wittenberg BA, Wittenberg JB. The electronic structure of protoheme proteins. I. An electron paramagnetic resonance and optical study of horseradish peroxidase and its derivatives.. J Biol Chem 1968 Apr 25;243(8):1854-62.
                    pubmed: 5646479
                  5. Shiga T, Imaizumi K. Electron spin resonance study on peroxidase- and oxidase-reactions of horse radish peroxidase and methemoglobin.. Arch Biochem Biophys 1975 Apr;167(2):469-79.
                    pubmed: 164829doi: 10.1016/0003-9861(75)90489-0google scholar: lookup
                  6. Fuchsman WH. Discrepancies among published amino acid sequences of soybean leghemoglobins: experimental evidence against cultivar differences as the sources of the discrepancies.. Arch Biochem Biophys 1985 Dec;243(2):454-60.
                    pubmed: 4083896doi: 10.1016/0003-9861(85)90522-3google scholar: lookup
                  7. Barry BA, Babcock GT. Tyrosine radicals are involved in the photosynthetic oxygen-evolving system.. Proc Natl Acad Sci U S A 1987 Oct;84(20):7099-103.
                    pubmed: 3313386doi: 10.1073/pnas.84.20.7099google scholar: lookup
                  8. Springer BA, Sligar SG. High-level expression of sperm whale myoglobin in Escherichia coli.. Proc Natl Acad Sci U S A 1987 Dec;84(24):8961-5.
                    pubmed: 3321062doi: 10.1073/pnas.84.24.8961google scholar: lookup
                  9. Burgova EN, Vanin AF, Demurov EA, Proshina IV. [Effect of the hyperbaric oxygenation of animals and man on mitochondrial function in their tissues (based on EPR study data)].. Izv Akad Nauk SSSR Biol 1989 Mar-Apr;(2):191-7.
                    pubmed: 2545758
                  10. Miki H, Harada K, Yamazaki I, Tamura M, Watanabe H. Electron spin resonance spectrum of Tyr-151 free radical formed in reactions of sperm whale metmyoglobin with ethyl hydroperoxide and potassium irridate.. Arch Biochem Biophys 1989 Dec;275(2):354-62.
                    pubmed: 2556963doi: 10.1016/0003-9861(89)90382-2google scholar: lookup
                  11. Barry BA, el-Deeb MK, Sandusky PO, Babcock GT. Tyrosine radicals in photosystem II and related model compounds. Characterization by isotopic labeling and EPR spectroscopy.. J Biol Chem 1990 Nov 25;265(33):20139-43.
                    pubmed: 2173697
                  12. Cutruzzolà F, Allocatelli CT, Ascenzi P, Bolognesi M, Sligar SG, Brunori M. Control and recognition of anionic ligands in myoglobin.. FEBS Lett 1991 May 6;282(2):281-4.
                    pubmed: 2037047doi: 10.1016/0014-5793(91)80495-ogoogle scholar: lookup
                  13. Davies MJ, Puppo A. Direct detection of a globin-derived radical in leghaemoglobin treated with peroxides.. Biochem J 1992 Jan 1;281 ( Pt 1)(Pt 1):197-201.
                    pubmed: 1310005doi: 10.1042/bj2810197google scholar: lookup
                  14. Wilks A, Ortiz de Montellano PR. Intramolecular translocation of the protein radical formed in the reaction of recombinant sperm whale myoglobin with H2O2.. J Biol Chem 1992 May 5;267(13):8827-33.
                    pubmed: 1315742
                  15. DeGray JA, Lassmann G, Curtis JF, Kennedy TA, Marnett LJ, Eling TE, Mason RP. Spectral analysis of the protein-derived tyrosyl radicals from prostaglandin H synthase.. J Biol Chem 1992 Nov 25;267(33):23583-8.
                    pubmed: 1331091
                  16. Liddington R, Derewenda Z, Dodson E, Hubbard R, Dodson G. High resolution crystal structures and comparisons of T-state deoxyhaemoglobin and two liganded T-state haemoglobins: T(alpha-oxy)haemoglobin and T(met)haemoglobin.. J Mol Biol 1992 Nov 20;228(2):551-79.
                    pubmed: 1453464doi: 10.1016/0022-2836(92)90842-8google scholar: lookup
                  17. McArthur KM, Davies MJ. Detection and reactions of the globin radical in haemoglobin.. Biochim Biophys Acta 1993 Oct 6;1202(2):173-81.
                    pubmed: 8399378doi: 10.1016/0167-4838(93)90002-9google scholar: lookup
                  18. Chernov GA, Shliakova TG, Sharygin VL, Sharf VG, Todorov IN, Mitrokhin IuI, Efremova OI, Khristianovich DS, Rozantseva TV, Pulatova MK. [The molecular aspects of the action of the radioprotector indralin].. Izv Akad Nauk Ser Biol 1994 Jan-Feb;(1):20-37.
                    pubmed: 7512850
                  19. Gunther MR, Kelman DJ, Corbett JT, Mason RP. Self-peroxidation of metmyoglobin results in formation of an oxygen-reactive tryptophan-centered radical.. J Biol Chem 1995 Jul 7;270(27):16075-81.
                    pubmed: 7608169doi: 10.1074/jbc.270.27.16075google scholar: lookup
                  20. Svistunenko DA, Patel RP, Wilson MT. An EPR investigation of human methaemoglobin oxidation by hydrogen peroxide: methods to quantify all paramagnetic species observed in the reaction.. Free Radic Res 1996 Apr;24(4):269-80.
                    pubmed: 8731011doi: 10.3109/10715769609088024google scholar: lookup
                  21. DeGray JA, Gunther MR, Tschirret-Guth R, Ortiz de Montellano PR, Mason RP. Peroxidation of a specific tryptophan of metmyoglobin by hydrogen peroxide.. J Biol Chem 1997 Jan 24;272(4):2359-62.
                    pubmed: 8999946doi: 10.1074/jbc.272.4.2359google scholar: lookup
                  22. Svistunenko DA, Patel RP, Voloshchenko SV, Wilson MT. The globin-based free radical of ferryl hemoglobin is detected in normal human blood.. J Biol Chem 1997 Mar 14;272(11):7114-21.
                    pubmed: 9054405doi: 10.1074/jbc.272.11.7114google scholar: lookup
                  23. Hargrove MS, Barry JK, Brucker EA, Berry MB, Phillips GN Jr, Olson JS, Arredondo-Peter R, Dean JM, Klucas RV, Sarath G. Characterization of recombinant soybean leghemoglobin a and apolar distal histidine mutants.. J Mol Biol 1997 Mar 14;266(5):1032-42.
                    pubmed: 9086279doi: 10.1006/jmbi.1996.0833google scholar: lookup
                  24. Gunther MR, Tschirret-Guth RA, Witkowska HE, Fann YC, Barr DP, Ortiz De Montellano PR, Mason RP. Site-specific spin trapping of tyrosine radicals in the oxidation of metmyoglobin by hydrogen peroxide.. Biochem J 1998 Mar 15;330 ( Pt 3)(Pt 3):1293-9.
                    pubmed: 9494099doi: 10.1042/bj3301293google scholar: lookup
                  25. Vojtechovský J, Chu K, Berendzen J, Sweet RM, Schlichting I. Crystal structures of myoglobin-ligand complexes at near-atomic resolution.. Biophys J 1999 Oct;77(4):2153-74.
                    pubmed: 10512835doi: 10.1016/S0006-3495(99)77056-6google scholar: lookup
                  26. GIBSON JF, INGRAM DJ, NICHOLLS P. Free radical produced in the reaction of memyoglobin with hydrogen peroxide.. Nature 1958 May 17;181(4620):1398-9.
                    pubmed: 13552678doi: 10.1038/1811398a0google scholar: lookup
                  27. Svistunenko DA. An EPR study of the peroxyl radicals induced by hydrogen peroxide in the haem proteins.. Biochim Biophys Acta 2001 Apr 7;1546(2):365-78.
                    pubmed: 11295442doi: 10.1016/s0167-4838(01)00157-1google scholar: lookup

                  Citations

                  This article has been cited 15 times.
                  1. Birczyńska-Zych M, Czepiel J, Łabanowska M, Kucharska M, Kurdziel M, Biesiada G, Garlicki A, Wesełucha-Birczyńska A. Course of Plasmodium infection studied using 2D-COS on human erythrocytes. Malar J 2023 Jun 20;22(1):188.
                    doi: 10.1186/s12936-023-04611-5pubmed: 37340440google scholar: lookup
                  2. Sztachova T, Tomkova A, Cizmar E, Jancura D, Fabian M. Radical in the Peroxide-Produced F-Type Ferryl Form of Bovine Cytochrome c Oxidase. Int J Mol Sci 2022 Oct 20;23(20).
                    doi: 10.3390/ijms232012580pubmed: 36293434google scholar: lookup
                  3. Kosmachevskaya OV, Nasybullina EI, Pugachenko IS, Novikova NN, Topunov AF. Antiglycation and Antioxidant Effect of Nitroxyl towards Hemoglobin. Antioxidants (Basel) 2022 Oct 11;11(10).
                    doi: 10.3390/antiox11102007pubmed: 36290730google scholar: lookup
                  4. Mannino MH, Patel RS, Eccardt AM, Janowiak BE, Wood DC, He F, Fisher JS. Reversible Oxidative Modifications in Myoglobin and Functional Implications. Antioxidants (Basel) 2020 Jun 24;9(6).
                    doi: 10.3390/antiox9060549pubmed: 32599765google scholar: lookup
                  5. Svistunenko DA, Manole A. Tyrosyl radical in haemoglobin and haptoglobin-haemoglobin complex: how does haptoglobin make haemoglobin less toxic?. J Biomed Res 2019 May 15;34(4):281-291.
                    doi: 10.7555/JBR.33.20180084pubmed: 32475850google scholar: lookup
                  6. Sirohiwal A, Neese F, Pantazis DA. Microsolvation of the Redox-Active Tyrosine-D in Photosystem II: Correlation of Energetics with EPR Spectroscopy and Oxidation-Induced Proton Transfer. J Am Chem Soc 2019 Feb 20;141(7):3217-3231.
                    doi: 10.1021/jacs.8b13123pubmed: 30666866google scholar: lookup
                  7. Vlasova II. Peroxidase Activity of Human Hemoproteins: Keeping the Fire under Control. Molecules 2018 Oct 8;23(10).
                    doi: 10.3390/molecules23102561pubmed: 30297621google scholar: lookup
                  8. Chakane S, Matos T, Kettisen K, Bulow L. Fetal hemoglobin is much less prone to DNA cleavage compared to the adult protein. Redox Biol 2017 Aug;12:114-120.
                    doi: 10.1016/j.redox.2017.02.008pubmed: 28222378google scholar: lookup
                  9. Chavali B, Masquelin T, Nilges MJ, Timm DE, Stout SL, Matter WF, Jin N, Jadhav PK, Deng GG. ESR and X-ray Structure Investigations on the Binding and Mechanism of Inhibition of the Native State of Myeloperoxidase with Low Molecular Weight Fragments. Appl Magn Reson 2015;46(8):853-873.
                    doi: 10.1007/s00723-015-0698-8pubmed: 26224994google scholar: lookup
                  10. Linde D, Pogni R, Cañellas M, Lucas F, Guallar V, Baratto MC, Sinicropi A, Sáez-Jiménez V, Coscolín C, Romero A, Medrano FJ, Ruiz-Dueñas FJ, Martínez AT. Catalytic surface radical in dye-decolorizing peroxidase: a computational, spectroscopic and site-directed mutagenesis study. Biochem J 2015 Mar 1;466(2):253-62.
                    doi: 10.1042/BJ20141211pubmed: 25495127google scholar: lookup
                  11. Miki Y, Calviño FR, Pogni R, Giansanti S, Ruiz-Dueñas FJ, Martínez MJ, Basosi R, Romero A, Martínez AT. Crystallographic, kinetic, and spectroscopic study of the first ligninolytic peroxidase presenting a catalytic tyrosine. J Biol Chem 2011 Apr 29;286(17):15525-34.
                    doi: 10.1074/jbc.M111.220996pubmed: 21367853google scholar: lookup
                  12. Reeder BJ, Grey M, Silaghi-Dumitrescu RL, Svistunenko DA, Bülow L, Cooper CE, Wilson MT. Tyrosine residues as redox cofactors in human hemoglobin: implications for engineering nontoxic blood substitutes. J Biol Chem 2008 Nov 7;283(45):30780-7.
                    doi: 10.1074/jbc.M804709200pubmed: 18728007google scholar: lookup
                  13. Dunne J, Caron A, Menu P, Alayash AI, Buehler PW, Wilson MT, Silaghi-Dumitrescu R, Faivre B, Cooper CE. Ascorbate removes key precursors to oxidative damage by cell-free haemoglobin in vitro and in vivo. Biochem J 2006 Nov 1;399(3):513-24.
                    doi: 10.1042/BJ20060341pubmed: 16848758google scholar: lookup
                  14. Vandegriff KD, Malavalli A, Minn C, Jiang E, Lohman J, Young MA, Samaja M, Winslow RM. Oxidation and haem loss kinetics of poly(ethylene glycol)-conjugated haemoglobin (MP4): dissociation between in vitro and in vivo oxidation rates. Biochem J 2006 Nov 1;399(3):463-71.
                    doi: 10.1042/BJ20060809pubmed: 16813564google scholar: lookup
                  15. Svistunenko DA, Cooper CE. A new method of identifying the site of tyrosyl radicals in proteins. Biophys J 2004 Jul;87(1):582-95.
                    doi: 10.1529/biophysj.104.041046pubmed: 15240491google scholar: lookup