Construction of a 5000(rad) whole-genome radiation hybrid panel in the horse and generation of a comprehensive and comparative map for ECA11.
Abstract: A 5000(rad) whole-genome radiation hybrid (RH) panel was created for the horse. The usefulness of the panel for generating physically ordered maps of individual equine chromosomes was tested by typing 24 markers on horse Chromosome 11 (ECA11). The overall retention of markers on this chromosome was 43.6%. Almost complete retention of two of the typed markers--- CA062 and AHT44---clearly indicated the location of thymidine kinase gene on the short arm of ECA11. Seven of the typed markers were FISH mapped to align the RH and cytogenetic maps. With the RH-MAPPER approach, a physically ordered map comprising four linkage groups and incorporating all the markers was obtained. The study provides the first comprehensive map for a horse chromosome that integrates all available mapping data and adds new information that spans the entire length of the equine chromosome. The map clearly underlines the resolving power and utility of the panel and emphasizes the need to have uniformly distributed cytogenetic markers for appropriate alignment of RH map with the chromosome. A comparative status of the ECA11 map in relation to the corresponding human/mouse chromosome is presented.
Publication Date: 2002-03-13 PubMed ID: 11889556DOI: 10.1007/s00335-001-2089-8Google Scholar: Lookup
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- Journal Article
- Research Support
- Non-U.S. Gov't
- Research Support
- U.S. Gov't
- Non-P.H.S.
- Research Support
- U.S. Gov't
- P.H.S.
Summary
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In this research article, scientists constructed a comprehensive genetic map of horse Chromosome 11 (ECA11) using a high intensity radiation hybrid panel. The map combines all existing mapping data, gives new insights covering the entire length of the equine chromosome, and also compares it with corresponding human and mouse chromosomes.
Construction of Whole-Genome Radiation Hybrid Panel
- The researchers created a 5000(rad) whole-genome radiation hybrid (RH) panel specific to the horse genome. This was a foundational step allowing for the typing and mapping of equine chromosomes.
Mapping of Horse Chromosome 11
- Using the RH panel, the researchers tested and typed 24 specific markers on horse Chromosome 11 (ECA11).
- The study found an overall retention of these markers on ECA11 to be approximately 43.6%.
- Complete retention of two markers, CA062 and AHT44, helped identify the location of the thymidine kinase gene on the short arm of the ECA11.
- Furthermore, seven of the typed markers were also FISH (Fluorescence In Situ Hybridization) mapped. This aided in aligning the RH and cytogenetic maps, giving a better understanding of the chromosome’s structure.
Generation of A Comprehensive ECA11 Map
- Using the RH-MAPPER approach, researchers were able to generate a physically ordered map that included four linkage groups and all of the typed markers.
- As a result, they provided the first comprehensive genetic map for a horse chromosome that integrates all existing mapping data.
- This map gave insights into the entire length of the equine chromosome not previously available.
Comparative Analysis of ECA11
- This research also presented a comparative analysis of the ECA11 horse chromosome in relation to equivalent chromosomes in humans and mice. This comparison is crucial for understanding possible genetic similarities and differences across species.
Significance and Future Needs
- The research highlighted the resolution and utility of the radiation hybrid panel in constructing detailed chromosome maps.
- It also underscored the need for uniformly distributed cytogenetic markers to ensure accurate alignment of the RH map with the chromosome. This would enhance the precision of future genetic mapping studies.
Cite This Article
APA
Chowdhary BP, Raudsepp T, Honeycutt D, Owens EK, Piumi F, Guérin G, Matise TC, Kata SR, Womack JE, Skow LC.
(2002).
Construction of a 5000(rad) whole-genome radiation hybrid panel in the horse and generation of a comprehensive and comparative map for ECA11.
Mamm Genome, 13(2), 89-94.
https://doi.org/10.1007/s00335-001-2089-8 Publication
Researcher Affiliations
- Division of Animal Genetics, The Royal Veterinary and Agricultural University, Grønnegårdsvej 3, 1870, Frederiksberg, Denmark. bchowdhary@cvm.tamu.edu
MeSH Terms
- Animals
- Cell Line
- Chromosomes / genetics
- Genetic Markers
- Genome
- Horses / genetics
- Radiation Hybrid Mapping
Grant Funding
- R01-HG01691 / NHGRI NIH HHS
Citations
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