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Biophysical journal1998; 75(1); 463-470; doi: 10.1016/S0006-3495(98)77534-4

Determination of the volume changes for pressure-induced transitions of apomyoglobin between the native, molten globule, and unfolded states.

Abstract: The volume change for the transition from the native state of horse heart apomyoglobin to a pressure-induced intermediate with fluorescence properties similar to those of the well-established molten globule or I form was measured to be -70 ml/mol. Complete unfolding of the protein by pressure at pH 4.2 revealed an upper limit for the unfolding of the intermediate of -61 ml/mol. At 0.3 M guanidine hydrochloride, the entire transition from native to molten globule to unfolded state was observed in the available pressure range below 2.5 kbar. The volume change for the N-->I transition is relatively large and does not correlate well with the changes in relative hydration for these transitions derived from measurements of the changes in heat capacity, consistent with the previously observed lack of correlation between the m-value for denaturant-induced transitions and the measured volume change of unfolding for cooperativity mutants of staphylococcal nuclease (Frye et al. 1996. Biochemistry. 35:10234-10239). Our results support the hypothesis that the volume change associated with the hydration of protein surface upon unfolding may involve both positive and negative underlying contributions that effectively cancel, and that the measured volume changes for protein structural transitions arise from another source, perhaps the elimination of void volume due to packing defects in the structured chains.
Publication Date: 1998-07-02 PubMed ID: 9649407PubMed Central: PMC1299719DOI: 10.1016/S0006-3495(98)77534-4Google Scholar: Lookup
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  • Journal Article
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Summary

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This research investigates the volume changes during the pressure-induced transitions of the protein apomyoglobin from its native state to intermediate and unfolded states. It was found that the volume changes for these transitions do not align well with hydrating changes, suggesting different sources for these structural changes.

Objective of the Research

  • The aim of the study was to determine the volume changes that occur when horse heart apomyoglobin transitions from its native state to a pressure-induced intermediate state, similar to the molten globule or I form of the protein, and when it is completely unfolded under pressure.

Methodology and Findings

  • The volume change between the native state of apomyoglobin and the intermediate I form was measured to be -70 ml/mol.
  • The upper limit for the complete unfolding of the protein by pressure at pH 4.2 was measured as -61 ml/mol.
  • At 0.3 M guanidine hydrochloride, the full transition from the native state to the molten globule to the unfolded state was observed under pressures below 2.5 kbar.
  • The researchers found that the volume change for the transition from the native state to the intermediate state is relatively large and does not align well with the expected changes in relative hydration based on heat capacity measurements.

Implications and Interpretation

  • The larger volume change for the N–>I transition contradicts the correlations observed in previous studies, such as the lack of correlation between the m-value for denaturant-induced transitions and the measured volume changes of unfolding for cooperativity mutants of staphylococcal nuclease.
  • The study supports the hypothesis that the volume change associated with protein surface hydration upon unfolding can involve both positive and negative contributions, which may effectively cancel out.
  • Therefore, the measured volume changes observed during protein structural transitions might not originate from the changes in hydration but could be due to other factors, such as the elimination of void volumes resulting from packing defects in the structured chains of the protein.

Cite This Article

APA
Vidugiris GJ, Royer CA. (1998). Determination of the volume changes for pressure-induced transitions of apomyoglobin between the native, molten globule, and unfolded states. Biophys J, 75(1), 463-470. https://doi.org/10.1016/S0006-3495(98)77534-4

Publication

ISSN: 0006-3495
NlmUniqueID: 0370626
Country: United States
Language: English
Volume: 75
Issue: 1
Pages: 463-470

Researcher Affiliations

Vidugiris, G J
  • School of Pharmacy, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Royer, C A

    MeSH Terms

    • Animals
    • Apoproteins / chemistry
    • Biophysical Phenomena
    • Biophysics
    • Horses
    • Hydrogen-Ion Concentration
    • Hydrostatic Pressure
    • In Vitro Techniques
    • Myocardium / chemistry
    • Myoglobin / chemistry
    • Protein Conformation
    • Protein Denaturation
    • Protein Folding
    • Spectrometry, Fluorescence

    References

    This article includes 40 references
    1. Mozhaev VV, Heremans K, Frank J, Masson P, Balny C. High pressure effects on protein structure and function.. Proteins 1996 Jan;24(1):81-91.
    2. Kay MS, Baldwin RL. Packing interactions in the apomyglobin folding intermediate.. Nat Struct Biol 1996 May;3(5):439-45.
      pubmed: 8612074doi: 10.1038/nsb0596-439google scholar: lookup
    3. Sire O, Alpert B, Royer CA. Probing pH and pressure effects on the apomyoglobin heme pocket with the 2'-(N,N-dimethylamino)-6-naphthoyl-4-trans-cyclohexanoic acid fluorophore.. Biophys J 1996 Jun;70(6):2903-14.
      pubmed: 8744328doi: 10.1016/S0006-3495(96)79860-0google scholar: lookup
    4. Bismuto E, Irace G, Sirangelo I, Gratton E. Pressure-induced perturbation of ANS-apomyoglobin complex: frequency domain fluorescence studies on native and acidic compact states.. Protein Sci 1996 Jan;5(1):121-6.
      pubmed: 8771204doi: 10.1002/pro.5560050115google scholar: lookup
    5. Chalikian TV, Bresiauer KJ. On volume changes accompanying conformational transitions of biopolymers.. Biopolymers 1996 Nov;39(5):619-26.
    6. Eliezer D, Wright PE. Is apomyoglobin a molten globule? Structural characterization by NMR.. J Mol Biol 1996 Nov 8;263(4):531-8.
      pubmed: 8918936doi: 10.1006/jmbi.1996.0596google scholar: lookup
    7. Panick G, Malessa R, Winter R, Rapp G, Frye KJ, Royer CA. Structural characterization of the pressure-denatured state and unfolding/refolding kinetics of staphylococcal nuclease by synchrotron small-angle X-ray scattering and Fourier-transform infrared spectroscopy.. J Mol Biol 1998 Jan 16;275(2):389-402.
      pubmed: 9466917doi: 10.1006/jmbi.1997.1454google scholar: lookup
    8. TEALE FW. Cleavage of the haem-protein link by acid methylethylketone.. Biochim Biophys Acta 1959 Oct;35:543.
      pubmed: 13837237doi: 10.1016/0006-3002(59)90407-xgoogle scholar: lookup
    9. CRUMPTON MJ, POLSON A. A COMPARISON OF THE CONFORMATION OF SPERM WHALE METMYOGLOBIN WITH THAT OF APOMYOGLOBIN.. J Mol Biol 1965 Apr;11:722-9.
      pubmed: 14338782doi: 10.1016/s0022-2836(65)80030-4google scholar: lookup
    10. KAUZMANN W. Some factors in the interpretation of protein denaturation.. Adv Protein Chem 1959;14:1-63.
      pubmed: 14404936doi: 10.1016/s0065-3233(08)60608-7google scholar: lookup
    11. Brandts JF, Oliveira RJ, Westort C. Thermodynamics of protein denaturation. Effect of pressu on the denaturation of ribonuclease A.. Biochemistry 1970 Feb 17;9(4):1038-47.
      pubmed: 5417389doi: 10.1021/bi00806a045google scholar: lookup
    12. Kirby EP, Steiner RF. The tryptophan microenvironments in apomyoglobin.. J Biol Chem 1970 Dec 10;245(23):6300-6.
      pubmed: 5484810
    13. Klapper MH. On the nature of the protein interior.. Biochim Biophys Acta 1971 Mar 23;229(3):557-66.
      pubmed: 5555208doi: 10.1016/0005-2795(71)90271-6google scholar: lookup
    14. Zipp A, Kauzmann W. Pressure denaturation of metmyoglobin.. Biochemistry 1973 Oct 9;12(21):4217-28.
      pubmed: 4795687doi: 10.1021/bi00745a028google scholar: lookup
    15. Balestrieri C, Colonna G, Giovane A, Irace G, Servillo L. Equilibrium evidence of non-single step transition during guanidine unfolding of apomyoglobins.. FEBS Lett 1976 Jul 1;66(1):60-4.
      pubmed: 1278441doi: 10.1016/0014-5793(76)80585-6google scholar: lookup
    16. Irace G, Balestrieri C, Parlato G, Servillo L, Colonna G. Tryptophanyl fluorescence heterogeneity of apomyoglobins. Correlation with the presence of two distinct structural domains.. Biochemistry 1981 Feb 17;20(4):792-9.
      pubmed: 7213613doi: 10.1021/bi00507a022google scholar: lookup
    17. Paladini AA Jr, Weber G. Pressure-induced reversible dissociation of enolase.. Biochemistry 1981 Apr 28;20(9):2587-93.
      pubmed: 7236623doi: 10.1021/bi00512a034google scholar: lookup
    18. Weber G, Drickamer HG. The effect of high pressure upon proteins and other biomolecules.. Q Rev Biophys 1983 Feb;16(1):89-112.
      pubmed: 6348832doi: 10.1017/s0033583500004935google scholar: lookup
    19. Rashin AA, Iofin M, Honig B. Internal cavities and buried waters in globular proteins.. Biochemistry 1986 Jun 17;25(12):3619-25.
      pubmed: 3718947doi: 10.1021/bi00360a021google scholar: lookup
    20. Griko YV, Privalov PL, Venyaminov SY, Kutyshenko VP. Thermodynamic study of the apomyoglobin structure.. J Mol Biol 1988 Jul 5;202(1):127-38.
      pubmed: 3172208doi: 10.1016/0022-2836(88)90525-6google scholar: lookup
    21. Goto Y, Fink AL. Phase diagram for acidic conformational states of apomyoglobin.. J Mol Biol 1990 Aug 20;214(4):803-5.
      pubmed: 2388268doi: 10.1016/0022-2836(90)90334-Igoogle scholar: lookup
    22. Dill KA. Dominant forces in protein folding.. Biochemistry 1990 Aug 7;29(31):7133-55.
      pubmed: 2207096doi: 10.1021/bi00483a001google scholar: lookup
    23. Hughson FM, Wright PE, Baldwin RL. Structural characterization of a partly folded apomyoglobin intermediate.. Science 1990 Sep 28;249(4976):1544-8.
      pubmed: 2218495doi: 10.1126/science.2218495google scholar: lookup
    24. Royer CA, Smith WR, Beechem JM. Analysis of binding in macromolecular complexes: a generalized numerical approach.. Anal Biochem 1990 Dec;191(2):287-94.
      pubmed: 2085174doi: 10.1016/0003-2697(90)90221-tgoogle scholar: lookup
    25. Hughson FM, Barrick D, Baldwin RL. Probing the stability of a partly folded apomyoglobin intermediate by site-directed mutagenesis.. Biochemistry 1991 Apr 30;30(17):4113-8.
      pubmed: 2021603doi: 10.1021/bi00231a001google scholar: lookup
    26. Royer CA, Beechem JM. Numerical analysis of binding data: advantages, practical aspects, and implications.. Methods Enzymol 1992;210:481-505.
      pubmed: 1584048doi: 10.1016/0076-6879(92)10025-9google scholar: lookup
    27. Barrick D, Baldwin RL. Three-state analysis of sperm whale apomyoglobin folding.. Biochemistry 1993 Apr 13;32(14):3790-6.
      pubmed: 8466917doi: 10.1021/bi00065a035google scholar: lookup
    28. Royer CA. Improvements in the numerical analysis of thermodynamic data from biomolecular complexes.. Anal Biochem 1993 Apr;210(1):91-7.
      pubmed: 8489028doi: 10.1006/abio.1993.1155google scholar: lookup
    29. Royer CA, Hinck AP, Loh SN, Prehoda KE, Peng X, Jonas J, Markley JL. Effects of amino acid substitutions on the pressure denaturation of staphylococcal nuclease as monitored by fluorescence and nuclear magnetic resonance spectroscopy.. Biochemistry 1993 May 18;32(19):5222-32.
      pubmed: 8494899doi: 10.1021/bi00070a034google scholar: lookup
    30. Hagihara Y, Aimoto S, Fink AL, Goto Y. Guanidine hydrochloride-induced folding of proteins.. J Mol Biol 1993 May 20;231(2):180-4.
      pubmed: 8389881doi: 10.1006/jmbi.1993.1272google scholar: lookup
    31. Jennings PA, Wright PE. Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin.. Science 1993 Nov 5;262(5135):892-6.
      pubmed: 8235610doi: 10.1126/science.8235610google scholar: lookup
    32. Griko YV, Privalov PL. Thermodynamic puzzle of apomyoglobin unfolding.. J Mol Biol 1994 Jan 28;235(4):1318-25.
      pubmed: 8308894doi: 10.1006/jmbi.1994.1085google scholar: lookup
    33. Peng X, Jonas J, Silva JL. High-pressure NMR study of the dissociation of Arc repressor.. Biochemistry 1994 Jul 12;33(27):8323-9.
      pubmed: 8031765doi: 10.1021/bi00193a020google scholar: lookup
    34. Gast K, Damaschun H, Misselwitz R, Müller-Frohne M, Zirwer D, Damaschun G. Compactness of protein molten globules: temperature-induced structural changes of the apomyoglobin folding intermediate.. Eur Biophys J 1994;23(4):297-305.
      pubmed: 7805629doi: 10.1007/BF00213579google scholar: lookup
    35. Vidugiris GJ, Markley JL, Royer CA. Evidence for a molten globule-like transition state in protein folding from determination of activation volumes.. Biochemistry 1995 Apr 18;34(15):4909-12.
      pubmed: 7711012doi: 10.1021/bi00015a001google scholar: lookup
    36. Takeda N, Kato M, Taniguchi Y. Pressure- and thermally-induced reversible changes in the secondary structure of ribonuclease A studied by FT-IR spectroscopy.. Biochemistry 1995 May 2;34(17):5980-7.
      pubmed: 7727454doi: 10.1021/bi00017a027google scholar: lookup
    37. Kataoka M, Nishii I, Fujisawa T, Ueki T, Tokunaga F, Goto Y. Structural characterization of the molten globule and native states of apomyoglobin by solution X-ray scattering.. J Mol Biol 1995 May 26;249(1):215-28.
      pubmed: 7776373doi: 10.1006/jmbi.1995.0290google scholar: lookup
    38. Loh SN, Kay MS, Baldwin RL. Structure and stability of a second molten globule intermediate in the apomyoglobin folding pathway.. Proc Natl Acad Sci U S A 1995 Jun 6;92(12):5446-50.
      pubmed: 7777528doi: 10.1073/pnas.92.12.5446google scholar: lookup
    39. Bismuto E, Sirangelo I, Irace G, Gratton E. Pressure-induced perturbation of apomyoglobin structure: fluorescence studies on native and acidic compact forms.. Biochemistry 1996 Jan 30;35(4):1173-8.
      pubmed: 8573571doi: 10.1021/bi951163ggoogle scholar: lookup
    40. Frye KJ, Perman CS, Royer CA. Testing the correlation between delta A and delta V of protein unfolding using m value mutants of staphylococcal nuclease.. Biochemistry 1996 Aug 6;35(31):10234-9.
      pubmed: 8756489doi: 10.1021/bi960693pgoogle scholar: lookup

    Citations

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      doi: 10.2147/OPTH.S369676pubmed: 35924184google scholar: lookup
    2. Piccirilli F, Plotegher N, Ortore MG, Tessari I, Brucale M, Spinozzi F, Beltramini M, Mariani P, Militello V, Lupi S, Perucchi A, B뫌o L. High-Pressure-Driven Reversible Dissociation of α-Synuclein Fibrils Reveals Structural Hierarchy.. Biophys J 2017 Oct 17;113(8):1685-1696.
      doi: 10.1016/j.bpj.2017.08.042pubmed: 29045863google scholar: lookup
    3. Dyson HJ, Wright PE. How Does Your Protein Fold? Elucidating the Apomyoglobin Folding Pathway.. Acc Chem Res 2017 Jan 17;50(1):105-111.
      doi: 10.1021/acs.accounts.6b00511pubmed: 28032989google scholar: lookup
    4. Lerch MT, Horwitz J, McCoy J, Hubbell WL. Circular dichroism and site-directed spin labeling reveal structural and dynamical features of high-pressure states of myoglobin.. Proc Natl Acad Sci U S A 2013 Dec 3;110(49):E4714-22.
      doi: 10.1073/pnas.1320124110pubmed: 24248390google scholar: lookup
    5. Petrauskas V, Gylytė J, Toleikis Z, Cimmperman P, Matulis D. Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature.. Eur Biophys J 2013 May;42(5):355-62.
      doi: 10.1007/s00249-012-0884-7pubmed: 23292439google scholar: lookup
    6. Murakami C, Ohmae E, Tate S, Gekko K, Nakasone K, Kato C. Comparative study on dihydrofolate reductases from Shewanella species living in deep-sea and ambient atmospheric-pressure environments.. Extremophiles 2011 Mar;15(2):165-75.
      doi: 10.1007/s00792-010-0345-0pubmed: 21181485google scholar: lookup
    7. Girard E, Marchal S, Perez J, Finet S, Kahn R, Fourme R, Marassio G, Dhaussy AC, Prangé T, Giffard M, Dulin F, Bonneté F, Lange R, Abraini JH, Mezouar M, Colloc'h N. Structure-function perturbation and dissociation of tetrameric urate oxidase by high hydrostatic pressure.. Biophys J 2010 May 19;98(10):2365-73.
      doi: 10.1016/j.bpj.2010.01.058pubmed: 20483346google scholar: lookup
    8. Lignell M, Tegler LT, Becker HC. Hydrated and dehydrated tertiary interactions--opening and closing--of a four-helix bundle peptide.. Biophys J 2009 Jul 22;97(2):572-80.
      doi: 10.1016/j.bpj.2009.04.055pubmed: 19619472google scholar: lookup
    9. Miksovská J, Larsen RW. Photothermal studies of pH induced unfolding of apomyoglobin.. J Protein Chem 2003 May;22(4):387-94.
      doi: 10.1023/a:1025398325578pubmed: 13678303google scholar: lookup
    10. Meersman F, Smeller L, Heremans K. Comparative Fourier transform infrared spectroscopy study of cold-, pressure-, and heat-induced unfolding and aggregation of myoglobin.. Biophys J 2002 May;82(5):2635-44.
      doi: 10.1016/S0006-3495(02)75605-1pubmed: 11964250google scholar: lookup
    11. Lesch H, Stadlbauer H, Friedrich J, Vanderkooi JM. Stability diagram and unfolding of a modified cytochrome c: what happens in the transformation regime?. Biophys J 2002 Mar;82(3):1644-53.
      doi: 10.1016/S0006-3495(02)75515-Xpubmed: 11867476google scholar: lookup
    12. Ibarra C, Nieslanik BS, Atkins WM. Contribution of aromatic-aromatic interactions to the anomalous pK(a) of tyrosine-9 and the C-terminal dynamics of glutathione S-transferase A1-1.. Biochemistry 2001 Sep 4;40(35):10614-24.
      doi: 10.1021/bi010672hpubmed: 11524005google scholar: lookup
    13. Valdez D, Le Huérou JY, Gindre M, Urbach W, Waks M. Hydration and protein folding in water and in reverse micelles: compressibility and volume changes.. Biophys J 2001 Jun;80(6):2751-60.
      doi: 10.1016/S0006-3495(01)76243-1pubmed: 11371450google scholar: lookup
    14. Ferrão-Gonzales AD, Souto SO, Silva JL, Foguel D. The preaggregated state of an amyloidogenic protein: hydrostatic pressure converts native transthyretin into the amyloidogenic state.. Proc Natl Acad Sci U S A 2000 Jun 6;97(12):6445-50.
      doi: 10.1073/pnas.97.12.6445pubmed: 10841549google scholar: lookup
    15. Kobashigawa Y, Sakurai M, Nitta K. Effect of hydrostatic pressure on unfolding of alpha-lactalbumin: volumetric equivalence of the molten globule and unfolded state.. Protein Sci 1999 Dec;8(12):2765-72.
      doi: 10.1110/ps.8.12.2765pubmed: 10631994google scholar: lookup
    16. St John RJ, Carpenter JF, Randolph TW. High pressure fosters protein refolding from aggregates at high concentrations.. Proc Natl Acad Sci U S A 1999 Nov 9;96(23):13029-33.
      doi: 10.1073/pnas.96.23.13029pubmed: 10557267google scholar: lookup