Evidence of widespread natural recombination among field isolates of equine herpesvirus 4 but not among field isolates of equine herpesvirus 1.
Abstract: Recombination in alphaherpesviruses allows evolution to occur in viruses that have an otherwise stable DNA genome with a low rate of nucleotide substitution. High-throughput sequencing of complete viral genomes has recently allowed natural (field) recombination to be studied in a number of different alphaherpesviruses, however, such studies have not been applied to equine herpesvirus 1 (EHV-1) or equine herpesvirus 4 (EHV-4). These two equine alphaherpesviruses are genetically similar, but differ in their pathogenesis and epidemiology. Both cause economically significant disease in horse populations worldwide. This study used high-throughput sequencing to determine the full genome sequences of EHV-1 and EHV-4 isolates (11 and 14 isolates, respectively) from Australian or New Zealand horses. These sequences were then analysed and examined for evidence of recombination. Evidence of widespread recombination was detected in the genomes of the EHV-4 isolates. Only one potential recombination event was detected in the genomes of the EHV-1 isolates, even when the genomes from an additional 11 international EHV-1 isolates were analysed. The results from this study reveal another fundamental difference between the biology of EHV-1 and EHV-4. The results may also be used to help inform the future safe use of attenuated equine herpesvirus vaccines.
Publication Date: 2015-12-21 PubMed ID: 26691326PubMed Central: PMC5381393DOI: 10.1099/jgv.0.000378Google Scholar: Lookup
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- Journal Article
- Research Support
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Summary
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This research paper looks into the genetic mixing or recombination patterns among two types of herpesvirus that infect horses – Equine Herpesvirus 1 (EHV-1) and Equine Herpesvirus 4 (EHV-4), and finds that while EHV-4 shows noticeable recombination activity, EHV-1 shows notably less, indicating a key difference in their biology.
Background and Purpose of Study
- The evolution of viruses happens primarily through the process of recombination, which is a form of genetic mixing.
- Using high-throughput sequencing, this study aimed to investigate the extent of natural recombination in two types of Equine Herpesviruses – EHV-1 and EHV-4.
- These viruses are genetically similar, but their pathogenesis and epidemiology differ, and they cause economically significant disease in horse populations globally.
Methodology of Study
- The researchers acquired isolates of both EHV-1 (11 isolates) and EHV-4 (14 isolates) from horses in Australia or New Zealand and conducted high-throughput sequencing on them to determine their full genome sequences.
- These sequences were then analyzed for evidence of recombination.
Results
- Analysis showed that there was a significant amount of recombination present in the genomes of the EHV-4 isolates.
- In contrast, only one potential recombination event was detected in the EHV-1 isolates, even when the genomes from an additional 11 international EHV-1 isolates were examined.
Conclusion and Implications
- The findings of this study reveal another key difference between the biology of EHV-1 and EHV-4, namely, their patterns of recombination.
- These findings can help inform the safe use of attenuated equine herpesvirus vaccines in the future.
Cite This Article
APA
Vaz PK, Horsington J, Hartley CA, Browning GF, Ficorilli NP, Studdert MJ, Gilkerson JR, Devlin JM.
(2015).
Evidence of widespread natural recombination among field isolates of equine herpesvirus 4 but not among field isolates of equine herpesvirus 1.
J Gen Virol, 97(3), 747-755.
https://doi.org/10.1099/jgv.0.000378 Publication
Researcher Affiliations
- Asia-Pacific Centre for Animal Health, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
- Asia-Pacific Centre for Animal Health, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
- Asia-Pacific Centre for Animal Health, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
- Asia-Pacific Centre for Animal Health, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
- Centre for Equine Infectious Diseases, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
- Centre for Equine Infectious Diseases, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
- Centre for Equine Infectious Diseases, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
- Asia-Pacific Centre for Animal Health, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria 3010, Australia.
MeSH Terms
- Animals
- Base Sequence
- Genome, Viral
- Herpesviridae Infections / veterinary
- Herpesviridae Infections / virology
- Herpesvirus 1, Equid / classification
- Herpesvirus 1, Equid / genetics
- Herpesvirus 1, Equid / isolation & purification
- Herpesvirus 4, Equid / classification
- Herpesvirus 4, Equid / genetics
- Herpesvirus 4, Equid / isolation & purification
- Horse Diseases / virology
- Horses
- Molecular Sequence Data
- New Zealand
- Phylogeny
- Recombination, Genetic
References
This article includes 39 references
- Allen G, Kydd J, Slater J. Equid herpesvirus 1 and equid herpesvirus 4 infections. Infectious Diseases of Livestock pp. 829–859.
- Bagust T. J., Pascoe R. R. (1968). Isolation of equine rhinopnemonitis virus from acute respiratory disease in a horse in queensland Vet J 44296.
- Bagust TJ, Pascoe RR. Studies on equine herpesviruses. 1. Characterisation of a strain of equine rhinopneumonitis virus isolated in Queensland.. Aust Vet J 1970 Sep;46(9):421-7.
- Bruen TC, Philippe H, Bryant D. A simple and robust statistical test for detecting the presence of recombination.. Genetics 2006 Apr;172(4):2665-81.
- Crabb BS, Studdert MJ. Comparative studies of the proteins of equine herpesviruses 4 and 1 and asinine herpesvirus 3: antibody response of the natural hosts.. J Gen Virol 1990 Sep;71 ( Pt 9):2033-41.
- Crabb BS, Studdert MJ. Equine herpesviruses 4 (equine rhinopneumonitis virus) and 1 (equine abortion virus).. Adv Virus Res 1995;45:153-90.
- Edington N, Smyth B, Griffiths L. The role of endothelial cell infection in the endometrium, placenta and foetus of equid herpesvirus 1 (EHV-1) abortions.. J Comp Pathol 1991 May;104(4):379-87.
- Gilkerson JR, Whalley JM, Drummer HE, Studdert MJ, Love DN. Epidemiological studies of equine herpesvirus 1 (EHV-1) in Thoroughbred foals: a review of studies conducted in the Hunter Valley of New South Wales between 1995 and 1997.. Vet Microbiol 1999 Aug 16;68(1-2):15-25.
- Gleeson LJ, Sullivan ND, Studdert MJ. Equine herpesviruses: type 3 as an abortigenic agent.. Aust Vet J 1976 Aug;52(8):349-54.
- Horner GW. Serological relationship between abortifacient and respiratory strains of equine herpesvirus type 1 in New Zealand.. N Z Vet J 1981 Jan-Feb;29(1-2):7-8.
- Huang JA, Ficorilli N, Hartley CA, Allen GP, Studdert MJ. Polymorphism of open reading frame 71 of equine herpesvirus-4 (EHV-4) and EHV-1.. J Gen Virol 2002 Mar;83(Pt 3):525-531.
- Huson DH. SplitsTree: analyzing and visualizing evolutionary data.. Bioinformatics 1998;14(1):68-73.
- Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability.. Mol Biol Evol 2013 Apr;30(4):772-80.
- Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.. Bioinformatics 2012 Jun 15;28(12):1647-9.
- Kolb AW, Ané C, Brandt CR. Using HSV-1 genome phylogenetics to track past human migrations.. PLoS One 2013;8(10):e76267.
- Lee SW, Markham PF, Markham JF, Petermann I, Noormohammadi AH, Browning GF, Ficorilli NP, Hartley CA, Devlin JM. First complete genome sequence of infectious laryngotracheitis virus.. BMC Genomics 2011 Apr 19;12:197.
- Lee SW, Markham PF, Coppo MJ, Legione AR, Markham JF, Noormohammadi AH, Browning GF, Ficorilli N, Hartley CA, Devlin JM. Attenuated vaccines can recombine to form virulent field viruses.. Science 2012 Jul 13;337(6091):188.
- Lee SW, Devlin JM, Markham JF, Noormohammadi AH, Browning GF, Ficorilli NP, Hartley CA, Markham PF. Phylogenetic and molecular epidemiological studies reveal evidence of multiple past recombination events between infectious laryngotracheitis viruses.. PLoS One 2013;8(2):e55121.
- Martin DP, Murrell B, Golden M, Khoosal A, Muhire B. RDP4: Detection and analysis of recombination patterns in virus genomes.. Virus Evol 2015;1(1):vev003.
- Norberg P, Liljeqvist JA, Bergström T, Sammons S, Schmid DS, Loparev VN. Complete-genome phylogenetic approach to varicella-zoster virus evolution: genetic divergence and evidence for recombination.. J Virol 2006 Oct;80(19):9569-76.
- Norberg P, Depledge DP, Kundu S, Atkinson C, Brown J, Haque T, Hussaini Y, MacMahon E, Molyneaux P, Papaevangelou V, Sengupta N, Koay ES, Tang JW, Underhill GS, Grahn A, Studahl M, Breuer J, Bergström T. Recombination of Globally Circulating Varicella-Zoster Virus.. J Virol 2015 Jul;89(14):7133-46.
- Patel JR, Heldens J. Equine herpesviruses 1 (EHV-1) and 4 (EHV-4)--epidemiology, disease and immunoprophylaxis: a brief review.. Vet J 2005 Jul;170(1):14-23.
- Peet RL, Coackley W, Smith VW, Main C. Equine abortion associated with herpesvirus.. Aust Vet J 1978 Mar;54(3):151.
- Peters GA, Tyler SD, Grose C, Severini A, Gray MJ, Upton C, Tipples GA. A full-genome phylogenetic analysis of varicella-zoster virus reveals a novel origin of replication-based genotyping scheme and evidence of recombination between major circulating clades.. J Virol 2006 Oct;80(19):9850-60.
- Pignatti PF, Cassai E, Meneguzzi G, Chenciner N, Milanesi G. Herpes simplex virus DNA isolation from infected cells with a novel procedure.. Virology 1979 Feb;93(1):260-4.
- Posada D. Evaluation of methods for detecting recombination from DNA sequences: empirical data.. Mol Biol Evol 2002 May;19(5):708-17.
- Posada D, Crandall KA. Evaluation of methods for detecting recombination from DNA sequences: computer simulations.. Proc Natl Acad Sci U S A 2001 Nov 20;98(24):13757-62.
- Studdert MJ. Equine herpesviruses. 4. Concurrent infection in horses with strangles and conjunctivitis.. Aust Vet J 1971 Sep;47(9):434-6.
- Studdert MJ, Blackney MH. Equine herpesviruses: on the differentiation of respiratory from foetal strains of type 1.. Aust Vet J 1979 Oct;55(10):488-92.
- Studdert MJ, Gleeson LJ. Isolation of equine rhinovirus type 1.. Aust Vet J 1977 Sep;53(9):452.
- Studdert MJ, Turner AJ, Peterson JE. Equine herpesviruses. I. Isolation and characterisation of equine rhinopneumonitis virus and other equine herpesviruses from horses.. Aust Vet J 1970 Mar;46(3):83-9.
- Studdert MJ, Fitzpatrick DR, Horner GW, Westbury HA, Gleeson LJ. Molecular epidemiology and pathogenesis of some equine herpesvirus type 1 (equine abortion virus) and type 4 (equine rhinopneumonitis virus) isolates.. Aust Vet J 1984 Nov;61(11):345-8.
- Studdert MJ, Hartley CA, Dynon K, Sandy JR, Slocombe RF, Charles JA, Milne ME, Clarke AF, El-Hage C. Outbreak of equine herpesvirus type 1 myeloencephalitis: new insights from virus identification by PCR and the application of an EHV-1-specific antibody detection ELISA.. Vet Rec 2003 Oct 4;153(14):417-23.
- Telford EA, Watson MS, McBride K, Davison AJ. The DNA sequence of equine herpesvirus-1.. Virology 1992 Jul;189(1):304-16.
- Telford EA, Watson MS, Perry J, Cullinane AA, Davison AJ. The DNA sequence of equine herpesvirus-4.. J Gen Virol 1998 May;79 ( Pt 5):1197-203.
- Thiry E, Meurens F, Muylkens B, McVoy M, Gogev S, Thiry J, Vanderplasschen A, Epstein A, Keil G, Schynts F. Recombination in alphaherpesviruses.. Rev Med Virol 2005 Mar-Apr;15(2):89-103.
- Varrasso A, Dynon K, Ficorilli N, Hartley CA, Studdert MJ, Drummer HE. Identification of equine herpesviruses 1 and 4 by polymerase chain reaction.. Aust Vet J 2001 Aug;79(8):563-9.
- Weller SK, Sawitzke JA. Recombination promoted by DNA viruses: phage λ to herpes simplex virus.. Annu Rev Microbiol 2014;68:237-58.
- Zell R, Taudien S, Pfaff F, Wutzler P, Platzer M, Sauerbrei A. Sequencing of 21 varicella-zoster virus genomes reveals two novel genotypes and evidence of recombination.. J Virol 2012 Feb;86(3):1608-22.
Citations
This article has been cited 17 times.- Onasanya AE, El-Hage C, Diaz-Méndez A, Vaz PK, Legione AR, Browning GF, Devlin JM, Hartley CA. Whole genome sequence analysis of equid gammaherpesvirus -2 field isolates reveals high levels of genomic diversity and recombination.. BMC Genomics 2022 Aug 30;23(1):622.
- Kang HW, Lee EY, Lee KK, Ko MK, Park JY, Kim YH, Lee K, Choi EJ, Kim J, So B, Park CK, Jeoung HY. Evaluation of the Variability of the ORF34, ORF68, and MLST Genes in EHV-1 from South Korea.. Pathogens 2021 Apr 2;10(4).
- Kuny CV, Szpara ML. Alphaherpesvirus Genomics: Past, Present and Future.. Curr Issues Mol Biol 2021;42:41-80.
- Preziuso S, Sgorbini M, Marmorini P, Cuteri V. Equid alphaherpesvirus 1 from Italian Horses: Evaluation of the Variability of the ORF30, ORF33, ORF34 and ORF68 Genes.. Viruses 2019 Sep 13;11(9).
- Lechmann J, Schoster A, Ernstberger M, Fouché N, Fraefel C, Bachofen C. A novel PCR protocol for detection and differentiation of neuropathogenic and non-neuropathogenic equid alphaherpesvirus 1.. J Vet Diagn Invest 2019 Sep;31(5):696-703.
- Garvey M, Lyons R, Hector RD, Walsh C, Arkins S, Cullinane A. Molecular Characterisation of Equine Herpesvirus 1 Isolates from Cases of Abortion, Respiratory and Neurological Disease in Ireland between 1990 and 2017.. Pathogens 2019 Jan 15;8(1).
- Hidayati DN, Untari T, Wibowo MH, Akiyama K, Asmara W. Cloning and sequencing gB, gD, and gM genes to perform the genetic variability of bovine herpesvirus-1 from Indonesia.. Vet World 2018 Sep;11(9):1255-1261.
- Lewin AC, Kolb AW, McLellan GJ, Bentley E, Bernard KA, Newbury SP, Brandt CR. Genomic, Recombinational and Phylogenetic Characterization of Global Feline Herpesvirus 1 Isolates.. Virology 2018 May;518:385-397.
- Amery-Gale J, Hartley CA, Vaz PK, Marenda MS, Owens J, Eden PA, Devlin JM. Avian viral surveillance in Victoria, Australia, and detection of two novel avian herpesviruses.. PLoS One 2018;13(3):e0194457.
- Bryant NA, Wilkie GS, Russell CA, Compston L, Grafham D, Clissold L, McLay K, Medcalf L, Newton R, Davison AJ, Elton DM. Genetic diversity of equine herpesvirus 1 isolated from neurological, abortigenic and respiratory disease outbreaks.. Transbound Emerg Dis 2018 Jun;65(3):817-832.
- Kolb AW, Lewin AC, Moeller Trane R, McLellan GJ, Brandt CR. Phylogenetic and recombination analysis of the herpesvirus genus varicellovirus.. BMC Genomics 2017 Nov 21;18(1):887.
- Loncoman CA, Hartley CA, Coppo MJC, Vaz PK, Diaz-Méndez A, Browning GF, García M, Spatz S, Devlin JM. Genetic Diversity of Infectious Laryngotracheitis Virus during In Vivo Coinfection Parallels Viral Replication and Arises from Recombination Hot Spots within the Genome.. Appl Environ Microbiol 2017 Dec 1;83(23).
- Stasiak K, Dunowska M, Hills SF, Rola J. Genetic characterization of equid herpesvirus type 1 from cases of abortion in Poland.. Arch Virol 2017 Aug;162(8):2329-2335.
- Loncoman CA, Hartley CA, Coppo MJ, Vaz PK, Diaz-Méndez A, Browning GF, Lee SW, Devlin JM. Development and application of a TaqMan single nucleotide polymorphism genotyping assay to study infectious laryngotracheitis virus recombination in the natural host.. PLoS One 2017;12(3):e0174590.
- Izume S, Kirisawa R, Ohya K, Ohnuma A, Kimura T, Omatsu T, Katayama Y, Mizutani T, Fukushi H. The full genome sequences of 8 equine herpesvirus type 4 isolates from horses in Japan.. J Vet Med Sci 2017 Jan 24;79(1):206-212.
- Abdelgawad A, Damiani A, Ho SY, Strauss G, Szentiks CA, East ML, Osterrieder N, Greenwood AD. Zebra Alphaherpesviruses (EHV-1 and EHV-9): Genetic Diversity, Latency and Co-Infections.. Viruses 2016 Sep 20;8(9).
- Vaz PK, Job N, Horsington J, Ficorilli N, Studdert MJ, Hartley CA, Gilkerson JR, Browning GF, Devlin JM. Low genetic diversity among historical and contemporary clinical isolates of felid herpesvirus 1.. BMC Genomics 2016 Sep 2;17(1):704.
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