Analyze Diet
Animal genetics2003; 34(6); 453-456; doi: 10.1046/j.0268-9146.2003.01044.x

Fixed nucleotide differences on the Y chromosome indicate clear divergence between Equus przewalskii and Equus caballus.

Abstract: The phylogenetic relationship between Equus przewalskii and E. caballus is often a matter of debate. Although these taxa have different chromosome numbers, they do not form monophyletic clades in a phylogenetic tree based on mtDNA sequences. Here we report sequence variation from five newly identified Y chromosome regions of the horse. Two fixed nucleotide differences on the Y chromosome clearly display Przewalski's horse and domestic horse as sister taxa. At both positions the Przewalski's horse haplotype shows the ancestral state, in common with the members of the zebra/ass lineage. We discuss the factors that may have led to the differences in mtDNA and Y-chromosomal observations.
Publication Date: 2003-12-23 PubMed ID: 14687077DOI: 10.1046/j.0268-9146.2003.01044.xGoogle Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.

The research discusses the phylogenetic relationship between two horse species, Equus przewalskii (Przewalski’s horse) and E. caballus (domestic horse) and concludes that, despite some similarities, the two species distinctly differ in their Y chromosome.

Discovery and Observation

  • The study focuses on the relationship between E. przewalskii and E. caballus. These two species of horse have often been the subject of phylogenetic debates because of their chromosome numbers and mtDNA sequences.
  • To better understand this relationship, the researchers discovered five new regions of the Y chromosome in the horse lineage.
  • These regions were analyzed to track any sequence variations.

Findings and Analysis

  • The research identified two fixed nucleotide differences on the Y chromosome, distinguishing Przewalski’s horse from the domestic horse.
  • These differences are fixed, meaning they remain constant across specimen and can be used to differentiate between species.
  • Peculiarly, it was found that at these specific positions, Przewalski’s horse haplotype presents the ancestral state, consistent with members of the zebra/ass lineage, a different branch of the horse family. It suggests Przewalski’s horse may share a more recent common ancestor with zebras and asses than with domestic horses.

Assessment and Contextualization

  • These distinct differences seen on the Y chromosome, provides evidence contradicting the assumed close relationship based on mtDNA sequences.
  • What led to this contradiction between mtDNA and Y-chromosomal observations forms a part of the debate and forms a major discussion point for the researchers.
  • The factors leading to these discrepancies are considered in the research as it’s seen to be significant to the broader understanding of the genetic ancestry and evolution of these species.

Cite This Article

APA
Wallner B, Brem G, Müller M, Achmann R. (2003). Fixed nucleotide differences on the Y chromosome indicate clear divergence between Equus przewalskii and Equus caballus. Anim Genet, 34(6), 453-456. https://doi.org/10.1046/j.0268-9146.2003.01044.x

Publication

ISSN: 0268-9146
NlmUniqueID: 8605704
Country: England
Language: English
Volume: 34
Issue: 6
Pages: 453-456

Researcher Affiliations

Wallner, B
  • Institut für Tierzucht und Genetik, Veterinärmedizinische Universität Wien, Veterinärplatz, Wien, Austria. wallner@i122server.vu-wien.ac.at
Brem, G
    Müller, M
      Achmann, R

        MeSH Terms

        • Animals
        • Base Sequence
        • DNA, Mitochondrial / genetics
        • Genetic Variation / genetics
        • Horses / classification
        • Horses / genetics
        • Male
        • Molecular Sequence Data
        • Phylogeny
        • Probability
        • Species Specificity
        • Y Chromosome / genetics

        Citations

        This article has been cited 25 times.
        1. Giontella A, Cardinali I, Sarti FM, Silvestrelli M, Lancioni H. Y-Chromosome Haplotype Report among Eight Italian Horse Breeds. Genes (Basel) 2023 Aug 9;14(8).
          doi: 10.3390/genes14081602pubmed: 37628653google scholar: lookup
        2. Musiał AD, Ropka-Molik K, Stefaniuk-Szmukier M, Myćka G, Bieniek A, Yasynetska N. Characteristic of Przewalski horses population from Askania-Nova reserve based on genetic markers. Mol Biol Rep 2023 Aug;50(8):7121-7126.
          doi: 10.1007/s11033-023-08581-4pubmed: 37365410google scholar: lookup
        3. Piras FM, Cappelletti E, Abdelgadir WA, Salamon G, Vignati S, Santagostino M, Sola L, Nergadze SG, Giulotto E. A Satellite-Free Centromere in Equus przewalskii Chromosome 10. Int J Mol Sci 2023 Feb 18;24(4).
          doi: 10.3390/ijms24044134pubmed: 36835543google scholar: lookup
        4. Cardinali I, Giontella A, Tommasi A, Silvestrelli M, Lancioni H. Unlocking Horse Y Chromosome Diversity. Genes (Basel) 2022 Dec 2;13(12).
          doi: 10.3390/genes13122272pubmed: 36553539google scholar: lookup
        5. Turghan MA, Jiang Z, Niu Z. An Update on Status and Conservation of the Przewalski's Horse (Equus ferus przewalskii): Captive Breeding and Reintroduction Projects. Animals (Basel) 2022 Nov 15;12(22).
          doi: 10.3390/ani12223158pubmed: 36428386google scholar: lookup
        6. Castaneda C, Radović L, Felkel S, Juras R, Davis BW, Cothran EG, Wallner B, Raudsepp T. Copy number variation of horse Y chromosome genes in normal equine populations and in horses with abnormal sex development and subfertility: relationship of copy number variations with Y haplogroups. G3 (Bethesda) 2022 Dec 1;12(12).
          doi: 10.1093/g3journal/jkac278pubmed: 36227030google scholar: lookup
        7. Cirilli O, Machado H, Arroyo-Cabrales J, Barrón-Ortiz CI, Davis E, Jass CN, Jukar AM, Landry Z, Marín-Leyva AH, Pandolfi L, Pushkina D, Rook L, Saarinen J, Scott E, Semprebon G, Strani F, Villavicencio NA, Kaya F, Bernor RL. Evolution of the Family Equidae, Subfamily Equinae, in North, Central and South America, Eurasia and Africa during the Plio-Pleistocene. Biology (Basel) 2022 Aug 24;11(9).
          doi: 10.3390/biology11091258pubmed: 36138737google scholar: lookup
        8. Klecel W, Martyniuk E. From the Eurasian Steppes to the Roman Circuses: A Review of Early Development of Horse Breeding and Management. Animals (Basel) 2021 Jun 22;11(7).
          doi: 10.3390/ani11071859pubmed: 34206575google scholar: lookup
        9. Liu S, Fu C, Yang Y, Zhang Y, Ma H, Xiong Z, Ling Y, Zhao C. Current genetic conservation of Chinese indigenous horses revealed with Y-chromosomal and mitochondrial DNA polymorphisms. G3 (Bethesda) 2021 Feb 9;11(2).
          doi: 10.1093/g3journal/jkab008pubmed: 33604674google scholar: lookup
        10. Fornal A, Kowalska K, Zabek T, Piestrzynska-Kajtoch A, Musiał AD, Ropka-Molik K. Genetic Diversity and Population Structure of Polish Konik Horse Based on Individuals from All the Male Founder Lines and Microsatellite Markers. Animals (Basel) 2020 Sep 3;10(9).
          doi: 10.3390/ani10091569pubmed: 32899310google scholar: lookup
        11. Wutke S, Sandoval-Castellanos E, Benecke N, Döhle HJ, Friederich S, Gonzalez J, Hofreiter M, Lõugas L, Magnell O, Malaspinas AS, Morales-Muñiz A, Orlando L, Reissmann M, Trinks A, Ludwig A. Decline of genetic diversity in ancient domestic stallions in Europe. Sci Adv 2018 Apr;4(4):eaap9691.
          doi: 10.1126/sciadv.aap9691pubmed: 29675468google scholar: lookup
        12. Chen H, Ren Z, Zhao J, Zhang C, Yang X. Y-chromosome polymorphisms of the domestic Bactrian camel in China. J Genet 2018 Mar;97(1):3-10.
          pubmed: 29666320
        13. Wilson Sayres MA. Genetic Diversity on the Sex Chromosomes. Genome Biol Evol 2018 Apr 1;10(4):1064-1078.
          doi: 10.1093/gbe/evy039pubmed: 29635328google scholar: lookup
        14. Khaudov AD, Duduev AS, Kokov ZA, Amshokov KK, Zhekamukhov MK, Zaitsev AM, Reissmann M. Genetic analysis of maternal and paternal lineages in Kabardian horses by uniparental molecular markers. Open Vet J 2018;8(1):40-46.
          doi: 10.4314/ovj.v8i1.7pubmed: 29445620google scholar: lookup
        15. Burger PA. The history of Old World camelids in the light of molecular genetics. Trop Anim Health Prod 2016 Jun;48(5):905-13.
          doi: 10.1007/s11250-016-1032-7pubmed: 27048619google scholar: lookup
        16. Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, Gamba C, Lorente-Galdos B, Polani S, Steiner C, Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson NI, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T, Willerslev E, Marques-Bonet T, Ryder OA, McCue M, Rieder S, Leeb T, Slatkin M, Orlando L. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Curr Biol 2015 Oct 5;25(19):2577-83.
          doi: 10.1016/j.cub.2015.08.032pubmed: 26412128google scholar: lookup
        17. Han H, Zhang Q, Gao K, Yue X, Zhang T, Dang R, Lan X, Chen H, Lei C. Y-Single Nucleotide Polymorphisms Diversity in Chinese Indigenous Horse. Asian-Australas J Anim Sci 2015 Aug;28(8):1066-74.
          doi: 10.5713/ajas.14.0784pubmed: 26104513google scholar: lookup
        18. Zhang T, Lu H, Chen C, Jiang H, Wu S. Genetic Diversity of mtDNA D-loop and Maternal Origin of Three Chinese Native Horse Breeds. Asian-Australas J Anim Sci 2012 Jul;25(7):921-6.
          doi: 10.5713/ajas.2011.11483pubmed: 25049645google scholar: lookup
        19. Brandariz-Fontes C, Leonard JA, Vega-Pla JL, Backström N, Lindgren G, Lippold S, Rico C. Y-chromosome analysis in Retuertas horses. PLoS One 2013;8(5):e64985.
          doi: 10.1371/journal.pone.0064985pubmed: 23741439google scholar: lookup
        20. Wallner B, Vogl C, Shukla P, Burgstaller JP, Druml T, Brem G. Identification of genetic variation on the horse y chromosome and the tracing of male founder lineages in modern breeds. PLoS One 2013;8(4):e60015.
          doi: 10.1371/journal.pone.0060015pubmed: 23573227google scholar: lookup
        21. Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SC, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L. Mitochondrial phylogenomics of modern and ancient equids. PLoS One 2013;8(2):e55950.
          doi: 10.1371/journal.pone.0055950pubmed: 23437078google scholar: lookup
        22. Lippold S, Knapp M, Kuznetsova T, Leonard JA, Benecke N, Ludwig A, Rasmussen M, Cooper A, Weinstock J, Willerslev E, Shapiro B, Hofreiter M. Discovery of lost diversity of paternal horse lineages using ancient DNA. Nat Commun 2011 Aug 23;2:450.
          doi: 10.1038/ncomms1447pubmed: 21863017google scholar: lookup
        23. Goto H, Ryder OA, Fisher AR, Schultz B, Kosakovsky Pond SL, Nekrutenko A, Makova KD. A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses. Genome Biol Evol 2011;3:1096-106.
          doi: 10.1093/gbe/evr067pubmed: 21803766google scholar: lookup
        24. Budowle B, Garofano P, Hellman A, Ketchum M, Kanthaswamy S, Parson W, van Haeringen W, Fain S, Broad T. Recommendations for animal DNA forensic and identity testing. Int J Legal Med 2005 Sep;119(5):295-302.
          doi: 10.1007/s00414-005-0545-9pubmed: 15834735google scholar: lookup
        25. Raudsepp T, Santani A, Wallner B, Kata SR, Ren C, Zhang HB, Womack JE, Skow LC, Chowdhary BP. A detailed physical map of the horse Y chromosome. Proc Natl Acad Sci U S A 2004 Jun 22;101(25):9321-6.
          doi: 10.1073/pnas.0403011101pubmed: 15197257google scholar: lookup