Function of bacteriophage G7C esterase tailspike in host cell adsorption.
Abstract: Bacteriophages recognize and bind to their hosts with the help of receptor-binding proteins (RBPs) that emanate from the phage particle in the form of fibers or tailspikes. RBPs show a great variability in their shapes, sizes, and location on the particle. Some RBPs are known to depolymerize surface polysaccharides of the host while others show no enzymatic activity. Here we report that both RBPs of podovirus G7C - tailspikes gp63.1 and gp66 - are essential for infection of its natural host bacterium E. coli 4s that populates the equine intestinal tract. We characterize the structure and function of gp63.1 and show that unlike any previously described RPB, gp63.1 deacetylates surface polysaccharides of E. coli 4s leaving the backbone of the polysaccharide intact. We demonstrate that gp63.1 and gp66 form a stable complex, in which the N-terminal part of gp66 serves as an attachment site for gp63.1 and anchors the gp63.1-gp66 complex to the G7C tail. The esterase domain of gp63.1 as well as domains mediating the gp63.1-gp66 interaction is widespread among all three families of tailed bacteriophages.
© 2017 John Wiley & Sons Ltd.
Publication Date: 2017-06-19 PubMed ID: 28513100DOI: 10.1111/mmi.13710Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Journal Article
Summary
This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.
The research explores how the bacteriophage G7C uses its receptor-binding proteins (RBPs) to bind to and infect its host bacterium E. coli 4s, a typical inhabitant of the equine intestinal tract. The study uncovers a previously unknown function of RBP gp63.1, which alters surface polysaccharides of E. coli 4s without destroying the backbone of the polysaccharide.
Receptor-Binding Proteins (RBPs) and Bacteriophage G7C
- Bacteriophages are viruses that infect bacteria. They use receptor-binding proteins (RBPs) to recognize and bind to their host bacteria.
- RBP structures can vary significantly in shape, size, and location on the bacteriophage.
- The bacteriophage G7C, the focus of this research, uses two RBPs known as tailspikes gp63.1 and gp66 to bind to its host, the bacterium E. coli 4s.
New Role of RBP gp63.1
- The study reveals that RBP gp63.1 has a unique function not previously observed in any other RBP. Instead of merely binding to the host bacterium, gp63.1 alters the composition of E. coli 4s surface polysaccharides.
- Rather than depolymerizing, or breaking down, the polysaccharide, gp63.1 deacetylates it, a process which removes acetyl groups but leaves the polysaccharide backbone intact.
RBP Complex gp63.1-gp66
- The gp63.1 RBP does not function in isolation. It forms a stable complex with the other RBP, gp66.
- The complex is anchored to the G7C tail through the N-terminal part of gp66, which serves as the attachment site for gp63.1.
Broad Presence of Esterase Domain and RBP Interactions
- The research also discovered that the esterase domain of gp63.1, associated with the deacetylation process, is widespread among all three families of tailed bacteriophages.
- Similarly, the domains mediating the gp63.1-gp66 interaction, essential for the formation of the complex, are also prevalent among these bacteriophages.
Cite This Article
APA
Prokhorov NS, Riccio C, Zdorovenko EL, Shneider MM, Browning C, Knirel YA, Leiman PG, Letarov AV.
(2017).
Function of bacteriophage G7C esterase tailspike in host cell adsorption.
Mol Microbiol, 105(3), 385-398.
https://doi.org/10.1111/mmi.13710 Publication
Researcher Affiliations
- Research Center of Biotechnology, Russian Academy of Sciences, Winogradsky Institute of Microbiology, 7b2 pr. 60-letiya Oktyabrya, Moscow, 117312, Russia.
- École Polytechnique Fédérale de Lausanne (EPFL), BSP-415, Lausanne, 1015, Switzerland.
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky pr, Moscow, 119991, Russia.
- École Polytechnique Fédérale de Lausanne (EPFL), BSP-415, Lausanne, 1015, Switzerland.
- Laboratory of Molecular Bioengineering, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, 16/10 Miklukho-Maklaya St, Moscow, 117997, Russia.
- École Polytechnique Fédérale de Lausanne (EPFL), BSP-415, Lausanne, 1015, Switzerland.
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky pr, Moscow, 119991, Russia.
- École Polytechnique Fédérale de Lausanne (EPFL), BSP-415, Lausanne, 1015, Switzerland.
- Research Center of Biotechnology, Russian Academy of Sciences, Winogradsky Institute of Microbiology, 7b2 pr. 60-letiya Oktyabrya, Moscow, 117312, Russia.
- Faculty of Biology, Lomonosov Moscow State University, 1-12 Leninskie Gory, Moscow, 119991, Russia.
MeSH Terms
- Adsorption / physiology
- Animals
- Bacteriophage P22 / chemistry
- Bacteriophage P22 / physiology
- Bacteriophages / physiology
- Crystallography, X-Ray
- Escherichia coli / metabolism
- Esterases / genetics
- Esterases / metabolism
- Horses / microbiology
- Models, Molecular
- Polysaccharides, Bacterial / metabolism
- Protein Binding
- Protein Conformation
- Viral Tail Proteins / metabolism
Citations
This article has been cited 40 times.- Xu J, Li J, Yan Y, Han P, Tong Y, Li X. SW16-7, a Novel Ackermannviridae Bacteriophage with Highly Effective Lytic Activity Targets Salmonella enterica Serovar Weltevreden.. Microorganisms 2023 Aug 15;11(8).
- Pas C, Latka A, Fieseler L, Briers Y. Phage tailspike modularity and horizontal gene transfer reveals specificity towards E. coli O-antigen serogroups.. Virol J 2023 Aug 7;20(1):174.
- Beamud B, García-González N, Gómez-Ortega M, González-Candelas F, Domingo-Calap P, Sanjuan R. Genetic determinants of host tropism in Klebsiella phages.. Cell Rep 2023 Feb 6;42(2):112048.
- Ouyang R, Costa AR, Cassidy CK, Otwinowska A, Williams VCJ, Latka A, Stansfeld PJ, Drulis-Kawa Z, Briers Y, Pelt DM, Brouns SJJ, Briegel A. High-resolution reconstruction of a Jumbo-bacteriophage infecting capsulated bacteria using hyperbranched tail fibers.. Nat Commun 2022 Nov 24;13(1):7241.
- Efimov AD, Golomidova AK, Kulikov EE, Belalov IS, Ivanov PA, Letarov AV. RB49-like Bacteriophages Recognize O Antigens as One of the Alternative Primary Receptors.. Int J Mol Sci 2022 Sep 26;23(19).
- Lukianova AA, Evseev PV, Shneider MM, Dvoryakova EA, Tokmakova AD, Shpirt AM, Kabilov MR, Obraztsova EA, Shashkov AS, Ignatov AN, Knirel YA, Dzhalilov FS, Miroshnikov KA. Pectobacterium versatile Bacteriophage Possum: A Complex Polysaccharide-Deacetylating Tail Fiber as a Tool for Host Recognition in Pectobacterial Schitoviridae.. Int J Mol Sci 2022 Sep 20;23(19).
- Li P, Ma W, Shen J, Zhou X. Characterization of Novel Bacteriophage vB_KpnP_ZX1 and Its Depolymerases with Therapeutic Potential for K57 Klebsiella pneumoniae Infection.. Pharmaceutics 2022 Sep 10;14(9).
- Oliveira H, Domingues R, Evans B, Sutton JM, Adriaenssens EM, Turner D. Genomic Diversity of Bacteriophages Infecting the Genus Acinetobacter.. Viruses 2022 Jan 19;14(2).
- Chao KL, Shang X, Greenfield J, Linden SB, Alreja AB, Nelson DC, Herzberg O. Structure of Escherichia coli O157:H7 bacteriophage CBA120 tailspike protein 4 baseplate anchor and tailspike assembly domains (TSP4-N).. Sci Rep 2022 Feb 8;12(1):2061.
- Danis-Wlodarczyk KM, Wozniak DJ, Abedon ST. Treating Bacterial Infections with Bacteriophage-Based Enzybiotics: In Vitro, In Vivo and Clinical Application.. Antibiotics (Basel) 2021 Dec 6;10(12).
- Maffei E, Shaidullina A, Burkolter M, Heyer Y, Estermann F, Druelle V, Sauer P, Willi L, Michaelis S, Hilbi H, Thaler DS, Harms A. Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection.. PLoS Biol 2021 Nov;19(11):e3001424.
- Timoshina OY, Shneider MM, Evseev PV, Shchurova AS, Shelenkov AA, Mikhaylova YV, Sokolova OS, Kasimova AA, Arbatsky NP, Dmitrenok AS, Knirel YA, Miroshnikov KA, Popova AV. Novel Acinetobacter baumannii Bacteriophage Aristophanes Encoding Structural Polysaccharide Deacetylase.. Viruses 2021 Aug 26;13(9).
- Sørensen AN, Woudstra C, Sørensen MCH, Brøndsted L. Subtypes of tail spike proteins predicts the host range of Ackermannviridae phages.. Comput Struct Biotechnol J 2021;19:4854-4867.
- Kulikov EE, Golomidova AK, Efimov AD, Belalov IS, Letarova MA, Zdorovenko EL, Knirel YA, Dmitrenok AS, Letarov AV. Equine Intestinal O-Seroconverting Temperate Coliphage Hf4s: Genomic and Biological Characterization.. Appl Environ Microbiol 2021 Oct 14;87(21):e0112421.
- Gonzalez F, Scharf BE. Identification of Receptor Binding Proteins in Flagellotropic Agrobacterium Phage 7-7-1.. Viruses 2021 Jun 29;13(7).
- Witte S, Zinsli LV, Gonzalez-Serrano R, Matter CI, Loessner MJ, van Mierlo JT, Dunne M. Structural and functional characterization of the receptor binding proteins of Escherichia coli O157 phages EP75 and EP335.. Comput Struct Biotechnol J 2021;19:3416-3426.
- Fraser A, Prokhorov NS, Jiao F, Pettitt BM, Scheuring S, Leiman PG. Quantitative description of a contractile macromolecular machine.. Sci Adv 2021 Jun;7(24).
- Rodríguez-Rubio L, Haarmann N, Schwidder M, Muniesa M, Schmidt H. Bacteriophages of Shiga Toxin-Producing Escherichia coli and Their Contribution to Pathogenicity.. Pathogens 2021 Mar 29;10(4).
- Dunne M, Prokhorov NS, Loessner MJ, Leiman PG. Reprogramming bacteriophage host range: design principles and strategies for engineering receptor binding proteins.. Curr Opin Biotechnol 2021 Apr;68:272-281.
- Golomidova AK, Efimov AD, Kulikov EE, Kuznetsov AS, Belalov IS, Letarov AV. O antigen restricts lysogenization of non-O157 Escherichia coli strains by Stx-converting bacteriophage phi24B.. Sci Rep 2021 Feb 4;11(1):3035.
- Evseev PV, Lukianova AA, Shneider MM, Korzhenkov AA, Bugaeva EN, Kabanova AP, Miroshnikov KK, Kulikov EE, Toshchakov SV, Ignatov AN, Miroshnikov KA. Origin and Evolution of Studiervirinae Bacteriophages Infecting Pectobacterium: Horizontal Transfer Assists Adaptation to New Niches.. Microorganisms 2020 Oct 31;8(11).
- V Volozhantsev N, M Shpirt A, I Borzilov A, V Komisarova E, M Krasilnikova V, S Shashkov A, V Verevkin V, A Knirel Y. Characterization and Therapeutic Potential of Bacteriophage-Encoded Polysaccharide Depolymerases with β Galactosidase Activity against Klebsiella pneumoniae K57 Capsular Type.. Antibiotics (Basel) 2020 Oct 25;9(11).
- Stephan MS, Broeker NK, Saragliadis A, Roos N, Linke D, Barbirz S. In vitro Analysis of O-Antigen-Specific Bacteriophage P22 Inactivation by Salmonella Outer Membrane Vesicles.. Front Microbiol 2020;11:510638.
- Greenfield J, Shang X, Luo H, Zhou Y, Linden SB, Heselpoth RD, Leiman PG, Nelson DC, Herzberg O. Structure and function of bacteriophage CBA120 ORF211 (TSP2), the determinant of phage specificity towards E. coli O157:H7.. Sci Rep 2020 Sep 21;10(1):15402.
- Piya D, Lessor L, Koehler B, Stonecipher A, Cahill J, Gill JJ. Genome-wide screens reveal Escherichia coli genes required for growth of T1-like phage LL5 and V5-like phage LL12.. Sci Rep 2020 May 15;10(1):8058.
- Ge P, Scholl D, Prokhorov NS, Avaylon J, Shneider MM, Browning C, Buth SA, Plattner M, Chakraborty U, Ding K, Leiman PG, Miller JF, Zhou ZH. Action of a minimal contractile bactericidal nanomachine.. Nature 2020 Apr;580(7805):658-662.
- Mangalea MR, Duerkop BA. Fitness Trade-Offs Resulting from Bacteriophage Resistance Potentiate Synergistic Antibacterial Strategies.. Infect Immun 2020 Jun 22;88(7).
- Lukianova AA, Shneider MM, Evseev PV, Shpirt AM, Bugaeva EN, Kabanova AP, Obraztsova EA, Miroshnikov KK, Senchenkova SN, Shashkov AS, Toschakov SV, Knirel YA, Ignatov AN, Miroshnikov KA. Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection.. Front Microbiol 2019;10:3147.
- Latka A, Leiman PG, Drulis-Kawa Z, Briers Y. Modeling the Architecture of Depolymerase-Containing Receptor Binding Proteins in Klebsiella Phages.. Front Microbiol 2019;10:2649.
- Broeker NK, Roske Y, Valleriani A, Stephan MS, Andres D, Koetz J, Heinemann U, Barbirz S. Time-resolved DNA release from an O-antigen-specific Salmonella bacteriophage with a contractile tail.. J Biol Chem 2019 Aug 2;294(31):11751-11761.
- Greenfield J, Shang X, Luo H, Zhou Y, Heselpoth RD, Nelson DC, Herzberg O. Structure and tailspike glycosidase machinery of ORF212 from E. coli O157:H7 phage CBA120 (TSP3).. Sci Rep 2019 May 14;9(1):7349.
- Kulikov EE, Golomidova AK, Prokhorov NS, Ivanov PA, Letarov AV. High-throughput LPS profiling as a tool for revealing of bacteriophage infection strategies.. Sci Rep 2019 Feb 27;9(1):2958.
- Kabanova AP, Shneider MM, Korzhenkov AA, Bugaeva EN, Miroshnikov KK, Zdorovenko EL, Kulikov EE, Toschakov SV, Ignatov AN, Knirel YA, Miroshnikov KA. Host Specificity of the Dickeya Bacteriophage PP35 Is Directed by a Tail Spike Interaction With Bacterial O-Antigen, Enabling the Infection of Alternative Non-pathogenic Bacterial Host.. Front Microbiol 2018;9:3288.
- Buth SA, Shneider MM, Scholl D, Leiman PG. Structure and Analysis of R1 and R2 Pyocin Receptor-Binding Fibers.. Viruses 2018 Aug 14;10(8).
- Thanki AM, Taylor-Joyce G, Dowah A, Nale JY, Malik D, Clokie MRJ. Unravelling the Links between Phage Adsorption and Successful Infection in Clostridium difficile.. Viruses 2018 Aug 6;10(8).
- Broeker NK, Kiele F, Casjens SR, Gilcrease EB, Thalhammer A, Koetz J, Barbirz S. In Vitro Studies of Lipopolysaccharide-Mediated DNA Release of Podovirus HK620.. Viruses 2018 May 29;10(6).
- Peng Q, Yuan Y. Characterization of a newly isolated phage infecting pathogenic Escherichia coli and analysis of its mosaic structural genes.. Sci Rep 2018 May 24;8(1):8086.
- Buttimer C, Hendrix H, Lucid A, Neve H, Noben JP, Franz C, O'Mahony J, Lavigne R, Coffey A. Novel N4-Like Bacteriophages of Pectobacterium atrosepticum.. Pharmaceuticals (Basel) 2018 May 14;11(2).
- Maciejewska B, Olszak T, Drulis-Kawa Z. Applications of bacteriophages versus phage enzymes to combat and cure bacterial infections: an ambitious and also a realistic application?. Appl Microbiol Biotechnol 2018 Mar;102(6):2563-2581.
- Golomidova AK, Kulikov EE, Babenko VV, Kostryukova ES, Letarov AV. Complete Genome Sequence of Bacteriophage St11Ph5, Which Infects Uropathogenic Escherichia coli Strain up11.. Genome Announc 2018 Jan 11;6(2).
Use Nutrition Calculator
Check if your horse's diet meets their nutrition requirements with our easy-to-use tool Check your horse's diet with our easy-to-use tool
Talk to a Nutritionist
Discuss your horse's feeding plan with our experts over a free phone consultation Discuss your horse's diet over a phone consultation
Submit Diet Evaluation
Get a customized feeding plan for your horse formulated by our equine nutritionists Get a custom feeding plan formulated by our nutritionists