Genetic Characterization of the Arabian Horse Population in Tunisia Using Microsatellites.
Abstract: The genetic diversity and population structure of Tunisian Arabian horses were assessed using highly polymorphic microsatellite markers, which are critical for conservation and breeding programs. Despite the cultural and economic importance of Arabian horses in Tunisia, molecular data supporting their management remain limited. In this study, DNA from 130 horses was genotyped with 17 ISAG-FAO-recommended microsatellites to evaluate diversity within Eastern and Western Arabian lineages and their relationship to Thoroughbreds. Eastern Arabians showed an average of 5.176 alleles per locus, observed heterozygosity of 0.657, expected heterozygosity of 0.677, and a fixation index of 0.028, while Western Arabians displayed 5.941 alleles, heterozygosity values of 0.689 (Ho) and 0.688 (He), and a fixation index of -0.006. Genetic differentiation was low between Eastern and Western Arabians (0.011) but moderate between Eastern Arabians and Thoroughbreds (0.071), with high gene flow within Arabian subpopulations (0.950). Principal component analysis confirmed distinct subpopulations. These findings highlight high genetic diversity in Western Arabians and variable heterozygosity in Eastern Arabians, providing a molecular basis for targeted breeding strategies to preserve genetic traits, control inbreeding, and ensure the long-term sustainability of Tunisian Arabian horse populations.
Publication Date: 2025-12-16 PubMed ID: 41465863PubMed Central: PMC12735056DOI: 10.3390/life15121925Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Journal Article
Cite This Article
APA
Jlassi M, Dhifalli I, Ouled Ahmed H, Lasfar F, El Gtari M, Jemmali B.
(2025).
Genetic Characterization of the Arabian Horse Population in Tunisia Using Microsatellites.
Life (Basel), 15(12), 1925.
https://doi.org/10.3390/life15121925 Publication
Researcher Affiliations
- Mateur Higher School of Agriculture, University of Carthage, Mateur 7030, Tunisia.
- Mateur Higher School of Agriculture, University of Carthage, Mateur 7030, Tunisia.
- Veterinary Research Institute of Tunisia, Tunis 1006, Tunisia.
- National Foundation for the Improvement of the Horse Breed, Sidi Thabet 2020, Tunisia.
- Mateur Higher School of Agriculture, University of Carthage, Mateur 7030, Tunisia.
- Mateur Higher School of Agriculture, University of Carthage, Mateur 7030, Tunisia.
Conflict of Interest Statement
The authors declare no conflicts of interest.
References
This article includes 30 references
- Yordanov G., Mehandjyiski I., Palova N., Atsenova N., Neov B., Radoslavov G., Hristov P. Genetic Diversity and Structure of the Main Danubian Horse Paternal Genealogical Lineages Based on Microsatellite Genotyping. Vet. Sci. 2022;9:333. doi: 10.3390/vetsci9070333.
- Hristov P., Radoslavov G., Mehandjyiski I., Salkova D., Yordanov G. Genetic Diversity and Population Structure among Arabian Horse Genealogical Lineages in Bulgaria. Diversity. 2024;16:281. doi: 10.3390/d16050281.
- Boichard D., Le Roy P., Levéziel H., Elsen J.M. Utilisation des marqueurs moléculaires en génétique animale. INRAE Prod. Anim. 1998;11:67–80. doi: 10.20870/productions-animales.1998.11.1.3918.
- Mburu D.N., Ochieng J.W., Kuria S.G., Jianlin H., Kaufmann B., Rege J.E.O., Hanotte O. Genetic diversity and relationships of indigenous Kenyan camel (Camelus dromedarius) populations: Implications for their classification. Anim. Genet. 2003;34:31–38. doi: 10.1046/j.1365-2052.2003.00937.x.
- Luís C., Cothran E.G., Oom M.M. Microsatellites in Portuguese autochthonous horse breeds: Usefulness for parentage testing. Genet. Mol. Biol. 2002;25:131–134. doi: 10.1590/S1415-47572002000200003.
- Joukhadar R., Jighly A. Microsatellites grant more stable flanking genes. BMC Res. Notes. 2012;5:556. doi: 10.1186/1756-0500-5-556.
- Haddad M.M., Jemmali B., Bedhiaf A., Bedhiaf S., Djemali M., Maamouri O., Jemmali B., Badri I., Selmi H., Rouissi H. Caractérisation moléculaire des races chevalines autochtones en Tunisie. J. New Sci. 2014;2:11–20.
- Jemmali B., Haddad M.M., Barhoumi N., Tounsi S., Lasfer F., Trabelsi A., Ben Aoun B., Gritli I., Ezzar S., Ben Younes A., et al. Genetic diversity in Tunisian horse breeds. Arch. Anim. Breed. 2017;60:153–163. doi: 10.5194/aab-60-153-2017.
- Jlassi M., Jemmali B., Ahmed H.O., Lasfer F., Gara A.B. Genotypic study of Tunisian Arabian stallions. Acta Biol. Szeged. 2022;66:17–22. doi: 10.14232/abs.2022.1.17-22.
- Yordanov G., Yordanov T., Mehandjyiski I., Radoslavov G., Salkova D., Hristov P. Population Structure and Genetic Diversity Among Shagya Arabian Horse Genealogical Lineages in Bulgaria Based on Microsatellite Genotyping. Vet. Sci. 2025;12:776. doi: 10.3390/vetsci12080776.
- FAO . Animal Production and Health Guidelines No. 9. FAO; Rome, Italy: 2011. [(accessed on 14 February 2018)]. Molecular genetic characterization of animal genetic resources. Available online: https://www.fao.org/3/i2413e/i2413e00.htm.
- Ellegren H., Johansson M., Sandberg K., Andersson L. Cloning of highly polymorphic microsatellites in the horse. Anim. Genet. 1992;23:133–142. doi: 10.1111/j.1365-2052.1992.tb00032.x.
- Binns M.M., Holmes N.G., Rolliman A., Scott A.M. The identification of polymorphic microsatellite loci in the horse and their use in thoroughbred parentage testing. Br. Vet. J. 1995;151:11–19. doi: 10.1016/S0007-1935(05)80057-0.
- Breen M., Lindgren G., Binns M.M., Norman J., Irvin Z., Bell K., Sandberg K., Ellegren H. Genetical and physical assignments of equine microsatellites—First integration of anchored markers in horse genome mapping. Mamm. Genome. 1997;8:267–273. doi: 10.1007/s003359900407.
- Lear T.L., Brandon R., Bell K. Physical mapping of ten equine dinucleotide repeat microsatellites. Anim. Genet. 1999;30:176–179. doi: 10.1046/j.1365-2052.1999.00404-15.x.
- Eggleston-Stott M.L., DelValle A., Bautista M., Dileanis S., Wictum E., Bowling A.T. Nine equine dinucleotide repeats at microsatellite loci UCDEQ136, UCDEQ405, UCDEQ412, UCDEQ425, UCDEQ437, UCDEQ467, UCDEQ487, UCDEQ502 and UCDEQ505. Anim. Genet. 1997;28:365–370.
- Guérin G., Bertaud M., Amigues Y. Characterization of seven new horse microsatellites: HMS1, HMS2, HMS3, HMS5, HMS6, HMS7 and HMS8. Anim. Genet. 1994;25:62.
- Marklund S., Ellegren H., Eriksson S., Sandberg K., Andersson L. Parentage testing and linkage analysis in the horse using a set of highly polymorphic microsatellites. Anim. Genet. 1994;25:19–27.
- van Haeringen H., Bowling A.T., Stott M.L., Lenstra J.A., Zwaagstra K.A. A highly polymorphic horse microsatellite locus: VHL20. Anim. Genet. 1994;25:212–213. doi: 10.1111/j.1365-2052.1994.tb00129.x.
- Coogle L., Bailet E., Reid R., Russ M. Equine dinucleotide repeat polymorphisms at loci LEX 002, -003,-004, -005, -007, -008, -009, -010, -011, -013, and -014. Anim. Genet. 1996;27:126–127.
- Drury D.W., Wade M.J. Genetic variation and co-variation for fitness between intra-population and inter-population backgrounds in the red flour beetle, Tribolium castaneum. J. Evol. Biol. 2011;24:168–176. doi: 10.1111/j.1420-9101.2010.02151.x.
- Wiberg R.A.W., Gaggiotti O.E., Morrissey M.B., Ritchie M.G. Identifying consistent allele frequency differences in studies of stratified populations. Methods Ecol. Evol. 2017;8:1561–1573. doi: 10.1111/2041-210x.12810.
- Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 1978;89:583–590. doi: 10.1093/genetics/89.3.583.
- Verrier E., Tixier-Boichard M., Bernigaud R., Naves M. Conservation and values of local livestock breeds: Usefulness of niche products and/or adaptation to specific environments. Anim. Genet. Resour. Info. 2005;36:21–31.
- Toro M.A., Fernández J., Caballero A. Molecular characterization of breeds and its use in conservation. Livest. Sci. 2009;120:174–195. doi: 10.1016/j.livsci.2008.07.003.
- Wright S. Evolution and the Genetics of Populations, Volume 2: Theory of Gene Frequencies. University of Chicago Press; Chicago, IL, USA: 1984. [(accessed on 30 November 2025)]. Available online: https://press.uchicago.edu/ucp/books/book/chicago/E/bo5961634.html.
- Wright S. Evolution and the Genetics of Populations, Volume 4: Variability Within and Among Natural Populations. University of Chicago Press; Chicago, IL, USA: 1984. [(accessed on 21 May 2020)]. Available online: https://press.uchicago.edu/ucp/books/book/chicago/E/bo3642015.html.
- Nei M. Bibliography. Columbia University Press; New York, NY, USA: 2019. pp. 433–496.
- Lee H.-G., Ko S.-R., Lee J.-W., Lee C.S., Ahn C.-Y., Oh H.-M., Jin L. Blastomonas fulva sp. nov., aerobic photosynthetic bacteria isolated from a Microcystis culture. Int. J. Syst. Evol. Microbiol. 2017;67:3721–3728. doi: 10.1099/ijsem.0.002084.
- Khanshour A., Conant E., Juras R., Cothran E.G. Microsatellite analysis of genetic diversity and population structure of Arabian horse populations. J. Hered. 2013;104:386–395. doi: 10.1093/jhered/est003.
Citations
This article has been cited 0 times.Use Nutrition Calculator
Check if your horse's diet meets their nutrition requirements with our easy-to-use tool Check your horse's diet with our easy-to-use tool
Talk to a Nutritionist
Discuss your horse's feeding plan with our experts over a free phone consultation Discuss your horse's diet over a phone consultation
Submit Diet Evaluation
Get a customized feeding plan for your horse formulated by our equine nutritionists Get a custom feeding plan formulated by our nutritionists