Interconversion of E and S isoenzymes of horse liver alcohol dehydrogenase. Several residues contribute indirectly to catalysis.
Abstract: The E and S isoenzymes of horse liver alcohol dehydrogenase differ by 10 amino acid residues, but only the S isoenzyme is active on 3 beta-hydroxysteroids. This functional difference was correlated to the differences in structures of the isoenzymes by characterizing a series of chimeric enzymes, which could represent intermediates in the evolution of catalytic activity. Deletion of Asp-115 from the E isoenzyme created the E/D115 delta enzyme that is active on steroids. The deletion alters the substrate binding pocket by moving Leu-116, which sterically hinders binding of steroids in the E isoenzyme. A chimeric enzyme (ESE) that has four changes in or near the substrate binding pocket (T94I/R101S/F110L/D115 delta) was 15-30-fold more catalytically efficient (V/Km) on uncharged steroids than was the E/D115 delta enzyme. Molecular modeling suggests that the substitutions at residues 94 and 110 indirectly affect the activity on steroids. ESE enzyme was 6-fold more active than the S isoenzyme on neutral steroids, due to substitutions not in the substrate binding pocket. The K366E and the Q17E/A43T/A59T substitutions in the S isoenzyme gave 2-fold increases in V/Km on steroids, which together can account for the changes observed with the ESE enzyme. The enzymes that are active on steroids did not bind 2,2,2-trifluoroethanol as tightly and were catalytically less efficient than the E isoenzyme with small alcohols. However, these enzymes were two to three and four to five orders of magnitude more efficient with 1-hexanol and 5 beta-androstane-3 beta,17 beta-diol, respectively, than with ethanol. These results demonstrate that several residues not directly participating in substrate binding or chemical catalysis contribute to catalytic efficiency.
Publication Date: 1992-03-15 PubMed ID: 1544927
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- Comparative Study
- Journal Article
- Research Support
- Non-U.S. Gov't
- Research Support
- U.S. Gov't
- P.H.S.
Summary
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This study focuses on the differences between the E and S isoenzymes of horse liver alcohol dehydrogenase, particularly on the fact that only the S isoenzyme is active with 3 beta-hydroxysteroids. The abstract highlights the creation of chimeric enzymes that could help to connect the evolution of catalytic activity, showing that several residues indirectly contribute to catalysis.
Key Points
- The E and S isoenzymes of horse liver alcohol dehydrogenase are only different in 10 amino acid residues, however, only the S isoenzyme shows catalytic activity on 3 beta-hydroxysteroids.
- The functional difference between the E and S enzymes is traced back to their structural differences. This was done by creating a series of chimeric enzymes that potentially represent evolution stages of catalytic activity.
- An important discovery was the creation of E/D115 delta enzyme acted upon by removing Asp-115 from the E isoenzyme. This change activated the enzyme on steroids by modifying the substrate binding pocket and moving Leu-116.
- A chimeric enzyme designated “ESE,” containing four changes in or near the substrate binding pocket, was found to be significantly more catalytically efficient on uncharged steroids than the altered E/D115 delta enzyme.
- Molecular modeling suggests the substitutions at residues 94 and 110 have indirect effects on steroid activity. In fact, the ESE enzyme was found to be more active on neutral steroids, not due to alterations in the substrate binding pocket but to other substitutions.
- The abstract also reports on the K366E and Q17E/A43T/A59T substitutions in the S isoenzyme, which led to noticeable improvements in catalytic activity on steroids, but decreases in binding strength and efficiency with small alcohols.
- Tests with specific substances showed that these enzymes were notably more efficient with 1-hexanol and 5 beta-androstane-3 beta,17 beta-diol, than with ethanol.
- The overall conclusion of the research is that several residues not directly participating in substrate binding or chemical catalysis indeed contribute noticeably to catalytic efficiency.
Cite This Article
APA
Park DH, Plapp BV.
(1992).
Interconversion of E and S isoenzymes of horse liver alcohol dehydrogenase. Several residues contribute indirectly to catalysis.
J Biol Chem, 267(8), 5527-5533.
Publication
Researcher Affiliations
- Department of Biochemistry, University of Iowa, Iowa City 52242.
MeSH Terms
- Alcohol Dehydrogenase / genetics
- Alcohol Dehydrogenase / metabolism
- Animals
- Base Sequence
- Chromosome Deletion
- Horses
- Isoenzymes / genetics
- Isoenzymes / metabolism
- Kinetics
- Liver / enzymology
- Models, Molecular
- Molecular Sequence Data
- Mutagenesis, Site-Directed
- Oligodeoxyribonucleotides
- Plasmids
- Protein Conformation
- Recombinant Proteins / metabolism
- Sequence Homology, Nucleic Acid
Grant Funding
- AA06223 / NIAAA NIH HHS
Citations
This article has been cited 4 times.- Shanmuganatham KK, Wallace RS, Ting-I Lee A, Plapp BV. Contribution of buried distal amino acid residues in horse liver alcohol dehydrogenase to structure and catalysis.. Protein Sci 2018 Mar;27(3):750-768.
- Kim K, Plapp BV. Inversion of substrate stereoselectivity of horse liver alcohol dehydrogenase by substitutions of Ser-48 and Phe-93.. Chem Biol Interact 2017 Oct 1;276:77-87.
- Swint-Kruse L. Using Evolution to Guide Protein Engineering: The Devil IS in the Details.. Biophys J 2016 Jul 12;111(1):10-8.
- Yahashiri A, Rubach JK, Plapp BV. Effects of cavities at the nicotinamide binding site of liver alcohol dehydrogenase on structure, dynamics and catalysis.. Biochemistry 2014 Feb 11;53(5):881-94.
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