Microsatellite Analysis of Genetic Diversity and Population Structure of the Iranian Kurdish Horse.
Abstract: Native breeds are essential for national stocks and genetic reservoir; therefore, the preservation of indigenous breeds is a key policy priority for countries around the world. Many conservationists would assert that genetic diversity is a prerequisite for adaptive evolution, and preserving genetic diversity will need conservation efforts for the long-term survival of domestic species. This study intended to evaluate the genetic diversity of the Iranian Kurdish horse population based on microsatellite indicators, which can partially prevent it from becoming extinct. Fifty-eight tail hair and blood samples were randomly collected from Kurdistan, Kermanshah, Ilam, West Azerbaijan, Isfahan, Kerman, Hamadan, and Tehran. Genomic DNA extraction was performed by a modified salting out method. The polymerase chain reaction amplification conditions were also separately undertaken for each marker. All microsatellite loci revealed polymorphisms in the studied population. Genetic variation was examined using 12 microsatellite loci (HMS7, HMS3, HMS2, HMS6, ASB2, ASB23, VHL20, HTG10, LEX33, ASB17, AHT4, and AHT5). We found that the means of the observed and effective number of alleles were 7.58 and 4.95, with the minimum and maximum values for each of these indices associated with the loci of HMS2 and ASB17, respectively. Moreover, the mean of observed and expected heterozygosity, polymorphism information content, and Shannon's Information Index of the Iranian Kurdish population were 0.77, 0.78, 0.75, and 1.67, respectively, indicating a high degree of genetic diversity in the entire studied population. More specifically, we acquired a range of new alleles in the Iranian Kurdish horse breed that differed in their genetic structure to those of other Iranian breeds in other studies. This study provides an exciting opportunity to improve our knowledge of genetic information which will be beneficial as a base to identify purebred Kurdish horses for a further Iranian Kurdish horse genetic and breeding program.
Copyright © 2020 Elsevier Inc. All rights reserved.
Publication Date: 2020-12-16 PubMed ID: 33663714DOI: 10.1016/j.jevs.2020.103358Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Journal Article
Summary
This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.
This research investigated the genetic diversity of the Iranian Kurdish horse population using microsatellite markers. The researchers found a high degree of genetic diversity, and identified some unique alleles in the breed, offering valuable knowledge to enhance future Kurdish horse breeding programs.
Analysis of the Research
- The research was focused on the Iranian Kurdish horse population, as native breeds represent crucial genetic reservoirs for national stocks. Genetic diversity is a critical prerequisite for adaptive evolution, therefore, conservation efforts for preserving such diversity are essential for domestic species’ long-term survival.
- A total of 58 tail hair and blood samples were randomly collected from various locations across Iran. Genomic DNA was extracted from these samples using a modified salting out method, and the polymerase chain reaction amplification process was undertaken differently for each marker.
- The genetic variation within the Kurdish horse population was examined using 12 different microsatellite loci. All of these microsatellite loci showed polymorphisms in the population. This means that there were multiple different forms (alleles) of each microsatellite locus present in the population, an indicator of high genetic diversity.
Results and Implications
- The study reported average observed and effective number of alleles as 7.58 and 4.95 respectively. The observed number of alleles reflects the actual number of different forms or variants of a gene present in the population, indicating a high amount of diversity. The effective number of alleles is a measure that takes into account the frequencies of those alleles – a higher effective number of alleles implies that the alleles are more evenly distributed in the population, showing a broader utilization of genetic resources.
- Further numerical results such as a mean observed heterozygosity of 0.77, expected heterozygosity of 0.78, polymorphism information content of 0.75, and a Shannon’s Information Index of 1.67 all point towards a high degree of genetic diversity among the Iranian Kurdish horse population.
- Interesting to note, the researchers discovered a range of new alleles in the Iranian Kurdish horse breed that showed diversity in their genetic structure compared to other Iranian breeds. This finding is significant because it supports the idea that the Iranian Kurdish horse is a distinct genetic population with a pool of unique genetic resources.
- The study’s findings pose an exciting opportunity to enhance our understanding of genetic information, more specifically, in the realm of Kurdish horse breeds. This information can serve as a valuable base to identify purebred Kurdish horses and drive the implementation of effective breeding and conservation programs in the future.
Cite This Article
APA
Amjadi MA, Yeganeh HM, Sadeghi M, Abbas Raza SH, Yang J, Najafabadi HA, Batool U, Shoorei H, Abdelnour SA, Ahmed JZ.
(2020).
Microsatellite Analysis of Genetic Diversity and Population Structure of the Iranian Kurdish Horse.
J Equine Vet Sci, 98, 103358.
https://doi.org/10.1016/j.jevs.2020.103358 Publication
Researcher Affiliations
- Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran.
- Associate Professor, Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran.
- Associate Professor, Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran.
- College of Animal Science and Technology, Northwest A&F University, Yangling, China. Electronic address: dr.haiderabbasraza@gmail.com.
- College of Animal Science and Technology, Northwest A&F University, Yangling, China.
- Faculty of Agriculture and Life Sciences, Department of Agricultural Sciences, Lincoln University, Christchurch, New Zealand.
- BS (Hons) Student in Department of Microbiology, Shaheed Benazir Bhutto Women University, Peshawar, Pakistan.
- Department of Anatomical Sciences, Faculty of Medicine, Birjand University of Medical Sciences, Birjand, Iran.
- Department of Animal Production, Faculty of Agriculture, Zagazig University, Zagazig, Egypt.
- College of Animal Sciences Guangxi University, Nanning, China.
MeSH Terms
- Alleles
- Animals
- Azerbaijan
- Horses / genetics
- Iran
- Microsatellite Repeats / genetics
- Polymorphism, Genetic / genetics
Citations
This article has been cited 4 times.- Mousavi SF, Razmkabir M, Rostamzadeh J, Seyedabadi HR, Naboulsi R, Petersen JL, Lindgren G. Genetic diversity and signatures of selection in four indigenous horse breeds of Iran. Heredity (Edinb) 2023 Aug;131(2):96-108.
- Nikbakhsh M, Varkoohi S, Seyedabadi HR. Mitochondrial DNA D-loop hyper-variable region 1 variability in Kurdish horse breed. Vet Med Sci 2023 Mar;9(2):721-728.
- Hou L, Sulayman A, Zeng Y, Zhou L, Aimaier A, Kader A, Shi L. Analysis of Genetic Diversity and Race Genetic Structure of Major Horse Breeds in Xinjiang, China. Animals (Basel) 2025 Sep 14;15(18).
- Song J, Wang H, Li S, Du C, Qian P, Wang W, Shen M, Zhang Z, Zhou J, Zhang Y, Li C, Hao Y, Dong Y. The genetic diversity of Oncomelania hupensis robertsoni, intermediate hosts of Schistosoma japonicum in hilly regions of China, using microsatellite markers. Parasit Vectors 2024 Mar 21;17(1):147.
Use Nutrition Calculator
Check if your horse's diet meets their nutrition requirements with our easy-to-use tool Check your horse's diet with our easy-to-use tool
Talk to a Nutritionist
Discuss your horse's feeding plan with our experts over a free phone consultation Discuss your horse's diet over a phone consultation
Submit Diet Evaluation
Get a customized feeding plan for your horse formulated by our equine nutritionists Get a custom feeding plan formulated by our nutritionists