Molecular cloning, nucleotide sequence and presence of multiple functional polyadenylation signals in the 3′-untranslated region of equine dopamine beta-hydroxylase cDNA.
Abstract: Complementary DNA (cDNA) encoding equine dopamine beta-hydroxylase (DBH) was amplified with a combination of reverse transcription-polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE) method, and their nucleotide sequences (Accession No. AB029430: the DDBJ nucleotide sequence database) was determined. A total of 3842 bp cDNA sequence was consisted with 5 bp of 5' flanking untranslated sequence, 1833 bp of open reading frame encoding 610 amino acids, and 2004 bp of 3' flanking untranslated sequence. The deduced amino acid sequence of equine DBH was very similar to the known mammalian DBH sequences. The similarity between amino acid sequence of equine DBH to sequences of bovine, human, rat and mouse DBH were 86.3, 84.6, 82.2 and 81.2%, respectively. Northern blot analysis and in situ hybridization revealed three different sizes of mRNA expressions in equine adrenal medulla tissue. Then we found three putative polyadenylation signal sites in the 3' flanking untranslated sequence. These results indicate that alternative use of three polyadenylation sites generates the equine DBH mRNA that have different sizes of 3' flanking untranslated region. These results may provide further evidence for understanding DBH molecule and clues for the equine DBH gene analysis.
Publication Date: 2003-02-21 PubMed ID: 12592705DOI: 10.1080/1042517021000013553Google Scholar: Lookup
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Summary
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Researchers cloned and sequenced the cDNA of the dopamine beta-hydroxylase (DBH) enzyme in horses, and identified three polyadenylation signals in the 3′-untranslated region, indicating the production of DBH mRNA variants in horse adrenal glands.
Overview of the Research
- The study was focused on the DBH enzyme in equines (horses), an enzyme involved in the creation of neurotransmitters in the nervous system.
- The researchers employed techniques of reverse transcription-polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE) to generate the cDNA encoding for DBH. The cDNA sequence was determined to be 3842 base pairs (bp) in length.
Analyzing the DBH cDNA Sequence
- The cDNA sequence contained 5 bp of 5′ flanking untranslated sequence, 1833 bp of an open reading frame encoding for 610 amino acids, and 2004 bp of 3′ flanking untranslated sequence.
- The study found that the amino acid sequence of equine DBH was highly similar to DBH sequences in other mammalian species – with 86.3% similarity to bovine (cows), 84.6% to human, 82.2% to rat, and 81.2% to mouse DBH sequences.
Expression of DBH mRNA
- Employing techniques of northern blot analysis and in situ hybridization, the researchers uncovered three different sized expressions of DBH mRNA in equine adrenal medulla tissue.
- Three polyadenylation signal sites, sequences in the DNA that indicate where an mRNA sequence can end, were found in the 3′ flanking untranslated sequence.
Implications of the Study
- The presence of three polyadenylation sites suggested that the horse DBH gene can generate mRNA variants of different sizes, leading to potentially different forms of the DBH enzyme in horses.
- This research adds to the understanding of the DBH enzyme in horses, specifically, and mammalian neurotransmitter production more generally.
- The findings also provide a foundation for further studies into horse specific DBH gene variations and potential impacts on physiology and behavior.
Cite This Article
APA
Sato F, Hasegawa T, Katayama Y, Ishida N.
(2003).
Molecular cloning, nucleotide sequence and presence of multiple functional polyadenylation signals in the 3′-untranslated region of equine dopamine beta-hydroxylase cDNA.
DNA Seq, 13(5), 257-262.
https://doi.org/10.1080/1042517021000013553 Publication
Researcher Affiliations
- Laboratory of Molecular and Cellular Biology, Equine Research Institute, Japan Racing Association, 321-4 Tokami-cho, Utsunomiya, 320-0856, Japan. fumios@center.equinst.go.jp
MeSH Terms
- 3' Untranslated Regions
- Adenosine / genetics
- Amino Acid Sequence
- Animals
- Base Sequence
- Blotting, Northern
- Dopamine beta-Hydroxylase / genetics
- Horses / genetics
- In Situ Hybridization
- Molecular Sequence Data
- Polymers
- Sequence Analysis, DNA
Citations
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