Next-Generation Sequencing in Equine Genomics.
Abstract: The sequencing and assembly of a reference genome for the horse has been revolutionary for investigation of horse health and performance. Next-generation sequencing (NGS) methods represent a second revolution in equine genomics. Researchers can align and compare DNA and RNA sequencing data to the reference genome to explore variation that may contribute or be attributed to disease. NGS has also facilitated the translation of research discovery to clinically relevant applications. This article discusses the history and development of NGS, details some of the available sequencing platforms, and describes currently available applications in the context of both discovery and clinical settings.
Copyright © 2020 Elsevier Inc. All rights reserved.
Publication Date: 2020-07-14 PubMed ID: 32654781DOI: 10.1016/j.cveq.2020.03.002Google Scholar: Lookup
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Summary
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The article describes how the use of next-generation sequencing (NGS) technology for equine genomics has led to major breakthroughs in understanding the factors affecting horse health and performance, and its potential translation to clinical applications.
Next-Generation Sequencing in Equine Genomics
- The paper outlines how the sequencing and assembly of the horse genome has transformed the field of equine health research. The creation of a reference genome for horses has allowed researchers to dive deeply into understanding the genetic underpinnings of equine health and performance.
- The authors further discuss the advent of next-generation sequencing (NGS) techniques, which they deem as another significant leap in the field. The NGS techniques let scientists compare and align sequences of DNA and RNA data to the reference genome. This enables them to explore variations that might contribute to or be attributed to diseases in horses.
Impact of NGS on Equine Research
- The article emphasizes that NGS has broadened the horizons of equine research, facilitating the transition of research discoveries to clinically relevant applications. Such breakthroughs could potentially be translated into preventive and therapeutic strategies for equine health.
- The authors also delve into the history and development of NGS, describing it as a core part of modern genomics and genetics. Despite being relatively new, NGS has already made a remarkable impact on the range of genomic investigations possible, particularly in relation to understanding disease processes and influences on performance.
Available Sequencing Platforms
- The article additionally provides detailed information about the available NGS platforms, critically appraising the strengths and weaknesses of each. This information is critical for researchers planning to use NGS in their research. It also highlights the dynamic nature of the field, with new and improved sequencing platforms continually under development.
Applications in Discovery and Clinical Settings
- Finally, the authors discuss current applications of NGS in both discovery and clinical contexts. In research settings, NGS has broadened the scope of genomic investigations, helping to probe deeper into the causal role of genetic variation in disease. In clinical contexts, it is being used to develop therapies targeting genetic defects, and for early detection of disease through genomic screening.
Cite This Article
APA
Petersen JL, Coleman SJ.
(2020).
Next-Generation Sequencing in Equine Genomics.
Vet Clin North Am Equine Pract, 36(2), 195-209.
https://doi.org/10.1016/j.cveq.2020.03.002 Publication
Researcher Affiliations
- Department of Animal Science, University of Nebraska-Lincoln, ANSC A218g, 3940 Fair Street, Lincoln, NE 68583-0908, USA.
- Department of Animal Sciences, Colorado State University, 1171 Campus Delivery, Fort Collins, CO 80523-1171, USA. Electronic address: stephen.coleman@colostate.edu.
MeSH Terms
- Animals
- Genomics / methods
- High-Throughput Nucleotide Sequencing / methods
- High-Throughput Nucleotide Sequencing / veterinary
- Horse Diseases / genetics
- Horses / genetics
- Sequence Analysis, DNA / methods
- Sequence Analysis, DNA / veterinary
Conflict of Interest Statement
Disclosure The authors have nothing to disclose.
Citations
This article has been cited 4 times.- Pei XM, Yeung MHY, Wong ANN, Tsang HF, Yu ACS, Yim AKY, Wong SCC. Targeted Sequencing Approach and Its Clinical Applications for the Molecular Diagnosis of Human Diseases. Cells 2023 Feb 2;12(3).
- Cardinali I, Giontella A, Tommasi A, Silvestrelli M, Lancioni H. Unlocking Horse Y Chromosome Diversity. Genes (Basel) 2022 Dec 2;13(12).
- Kupczyk P, Rykala M, Serek P, Pawlak A, Slowikowski B, Holysz M, Chodaczek G, Madej JP, Ziolkowski P, Niedzwiedz A. The cannabinoid receptors system in horses: Tissue distribution and cellular identification in skin. J Vet Intern Med 2022 Jul;36(4):1508-1524.
- Chen C, Zhu B, Tang X, Chen B, Liu M, Gao N, Li S, Gu J. Genome-Wide Assessment of Runs of Homozygosity by Whole-Genome Sequencing in Diverse Horse Breeds Worldwide. Genes (Basel) 2023 Jun 1;14(6).
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