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Applied spectroscopy2017; 71(10); 2253-2262; doi: 10.1177/0003702817726766

Optimal Regression Method for Near-Infrared Spectroscopic Evaluation of Articular Cartilage.

Abstract: Near-infrared (NIR) spectroscopy has been successful in nondestructive assessment of biological tissue properties, such as stiffness of articular cartilage, and is proposed to be used in clinical arthroscopies. Near-infrared spectroscopic data include absorbance values from a broad wavelength region resulting in a large number of contributing factors. This broad spectrum includes information from potentially noisy variables, which may contribute to errors during regression analysis. We hypothesized that partial least squares regression (PLSR) is an optimal multivariate regression technique and requires application of variable selection methods to further improve the performance of NIR spectroscopy-based prediction of cartilage tissue properties, including instantaneous, equilibrium, and dynamic moduli and cartilage thickness. To test this hypothesis, we conducted for the first time a comparative analysis of multivariate regression techniques, which included principal component regression (PCR), PLSR, ridge regression, least absolute shrinkage and selection operator (Lasso), and least squares version of support vector machines (LS-SVM) on NIR spectral data of equine articular cartilage. Additionally, we evaluated the effect of variable selection methods, including Monte Carlo uninformative variable elimination (MC-UVE), competitive adaptive reweighted sampling (CARS), variable combination population analysis (VCPA), backward interval PLS (BiPLS), genetic algorithm (GA), and jackknife, on the performance of the optimal regression technique. The PLSR technique was found as an optimal regression tool (R = 75.6%, R = 64.9%) for cartilage NIR data; variable selection methods simplified the prediction models enabling the use of lesser number of regression components. However, the improvements in model performance with variable selection methods were found to be statistically insignificant. Thus, the PLSR technique is recommended as the regression tool for multivariate analysis for prediction of articular cartilage properties from its NIR spectra.
Publication Date: 2017-08-22 PubMed ID: 28753034DOI: 10.1177/0003702817726766Google Scholar: Lookup
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  • Journal Article

Summary

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This research discusses the use of Near-Infrared (NIR) spectroscopy to assess properties of articular cartilage, and how various regression techniques, especially partial least squares regression (PLSR), can improve the evaluation process. It concludes that PLSR is the most optimal method but asserts that improvements gained through variable selection methods are not significantly substantial.

Study Emphasis

  • The study is focused on the use of near-infrared (NIR) spectroscopy in the non-destructive analysis of biological tissues. Primarily, it explores how NIR spectroscopy can be utilized in evaluating structural properties of articular cartilage like stiffness and thickness.
  • The researchers hypothesize that PLSR is the most effective multivariate regression technique in this analysis, and that using variable selection methods can enhance results or predictions of cartilage properties.

Methods and Evaluation

  • The hypothesis was tested through a comparison of various multivariate regression techniques including, PLSR, principal component regression (PCR), ridge regression, least absolute shrinkage and selection operator (Lasso), and least squares version of support vector machines (LS-SVM). The tests were carried out on NIR spectral data of equine articular cartilage.
  • In addition to regression techniques, the effect of variable selection methods such as Monte Carlo uninformative variable elimination (MC-UVE), competitive adaptive reweighted sampling (CARS), variable combination population analysis (VCPA), backward interval PLS (BiPLS), genetic algorithm (GA), and jackknife, were also evaluated in their impact on the optimal regression technique.

Findings and Recommendations

  • The findings showed that the PLSR technique stood out as the optimal regression tool for multivariate analysis of NIR spectral data of cartilage.
  • With respect to the variable selection methods, the study found that these techniques simplified the prediction models by allowing the use of a lesser number of regression components. This means with variable selection methods, a simpler model can be used which can speed up computations and can also improve interpretability.
  • However, despite the simplicity offered by the variable selection methods, the improvements observed on model performance were found to be statistically insignificant, and did not substantially enhance the results.
  • Based on these results, the authors recommend the use of the PLSR technique as the regression tool for the prediction of articular cartilage properties from NIR spectra.

Cite This Article

APA
Prakash M, Sarin JK, Rieppo L, Afara IO, Töyräs J. (2017). Optimal Regression Method for Near-Infrared Spectroscopic Evaluation of Articular Cartilage. Appl Spectrosc, 71(10), 2253-2262. https://doi.org/10.1177/0003702817726766

Publication

ISSN: 1943-3530
NlmUniqueID: 0372406
Country: United States
Language: English
Volume: 71
Issue: 10
Pages: 2253-2262

Researcher Affiliations

Prakash, Mithilesh
  • 1 Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
Sarin, Jaakko K
  • 1 Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
  • 2 Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland.
Rieppo, Lassi
  • 1 Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
  • 3 Research Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland.
Afara, Isaac O
  • 1 Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
  • 2 Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland.
Töyräs, Juha
  • 1 Department of Applied Physics, University of Eastern Finland, Kuopio, Finland.
  • 2 Diagnostic Imaging Center, Kuopio University Hospital, Kuopio, Finland.

MeSH Terms

  • Animals
  • Cartilage, Articular / chemistry
  • Horses
  • Regression Analysis
  • Spectroscopy, Near-Infrared / methods

Citations

This article has been cited 7 times.
  1. Cui A, Nippolainen E, Shaikh R, Torniainen J, Ristaniemi A, Finnilä M, Korhonen RK, Saarakkala S, Herzog W, Töyräs J, Afara IO. Assessment of Ligament Viscoelastic Properties Using Raman Spectroscopy.. Ann Biomed Eng 2022 Sep;50(9):1134-1142.
    doi: 10.1007/s10439-022-02988-zpubmed: 35802206google scholar: lookup
  2. Khan B, Kafian-Attari I, Nippolainen E, Shaikh R, Semenov D, Hauta-Kasari M, Töyräs J, Afara IO. Articular cartilage optical properties in the near-infrared (NIR) spectral range vary with depth and tissue integrity.. Biomed Opt Express 2021 Oct 1;12(10):6066-6080.
    doi: 10.1364/BOE.430053pubmed: 34745722google scholar: lookup
  3. Querido W, Kandel S, Pleshko N. Applications of Vibrational Spectroscopy for Analysis of Connective Tissues.. Molecules 2021 Feb 9;26(4).
    doi: 10.3390/molecules26040922pubmed: 33572384google scholar: lookup
  4. Ala-Myllymäki J, Paakkonen T, Joukainen A, Kröger H, Lehenkari P, Töyräs J, Afara IO. Near-Infrared Spectroscopy for Mapping of Human Meniscus Biochemical Constituents.. Ann Biomed Eng 2021 Jan;49(1):469-476.
    doi: 10.1007/s10439-020-02578-xpubmed: 32720092google scholar: lookup
  5. Nippolainen E, Shaikh R, Virtanen V, Rieppo L, Saarakkala S, Töyräs J, Afara IO. Near Infrared Spectroscopy Enables Differentiation of Mechanically and Enzymatically Induced Cartilage Injuries.. Ann Biomed Eng 2020 Sep;48(9):2343-2353.
    doi: 10.1007/s10439-020-02506-zpubmed: 32300956google scholar: lookup
  6. Sarin JK, Torniainen J, Prakash M, Rieppo L, Afara IO, Töyräs J. Dataset on equine cartilage near infrared spectra, composition, and functional properties.. Sci Data 2019 Aug 30;6(1):164.
    doi: 10.1038/s41597-019-0170-ypubmed: 31471536google scholar: lookup
  7. Yoplac I, Avila-George H, Vargas L, Robert P, Castro W. Determination of the superficial citral content on microparticles: An application of NIR spectroscopy coupled with chemometric tools.. Heliyon 2019 Jul;5(7):e02122.
    doi: 10.1016/j.heliyon.2019.e02122pubmed: 31388576google scholar: lookup