Topic:Predictive Model

Assessing the predictability of racing performance of Thoroughbreds using mixed-effects model. Oda D, Onogi A.The inheritance of racing performance in Thoroughbreds is of interest to breeders and geneticists. Therefore, the genetic parameters of racing performance have been investigated in various populations of Thoroughbreds. However, the predictability of the racing performance of a racehorse has not been assessed well. In this study, we built mixed-effects models for Japanese Thoroughbreds and assessed their predictability of racing performance. We used the average velocity as an index of racing performance and treated each category of racecourse and distance as different traits. Model selection us...
Genetic architecture and polygenic risk score prediction of degenerative suspensory ligament desmitis (DSLD) in the Peruvian Horse.
Frontiers in genetics    August 14, 2023   Volume 14 1201628 doi: 10.3389/fgene.2023.1201628
Momen M, Brauer K, Patterson MM, Sample SJ, Binversie EE, Davis BW, Cothran EG, Rosa GJM, Brounts SH, Muir P. Spontaneous rupture of tendons and ligaments is common in several species including humans. In horses, degenerative suspensory ligament desmitis (DSLD) is an important acquired idiopathic disease of a major energy-storing tendon-like structure. DSLD risk is increased in several breeds, including the Peruvian Horse. Affected horses have often been used for breeding before the disease is apparent. Breed predisposition suggests a substantial genetic contribution, but heritability and genetic architecture of DSLD have not been determined. To identify genomic regions associated with DSLD, we recr...
Use of multiple admission variables better predicts intestinal strangulation in horses with colic than peritoneal or the ratio of peritoneal:blood l-lactate concentration.
Equine veterinary journal    August 4, 2023   doi: 10.1111/evj.13977
Long AE, Southwood LL, Morris TB, Brandly JE, Stefanovski D.Early identification of strangulating obstruction (SO) in horses with colic improves outcomes, yet early diagnosis of horses requiring surgery for SO often remains challenging. Objectives: To compare blood and peritoneal fluid l-lactate concentrations, peritoneal:blood l-lactate ratio, peritoneal minus blood (peritoneal-blood) l-lactate concentration and other clinical variables for predicting SO and SO in horses with small intestinal lesions (SO-SI) and then to develop a multivariable model to predict SO and SO-SI.
Dynamics of eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States.
Current biology : CB    June 8, 2023   Volume 33, Issue 12 2515-2527.e6 doi: 10.1016/j.cub.2023.05.047
Hill V, Koch RT, Bialosuknia SM, Ngo K, Zink SD, Koetzner CA, Maffei JG, Dupuis AP, Backenson PB, Oliver J, Bransfield AB, Misencik MJ, Petruff TA....Eastern equine encephalitis virus (EEEV) causes a rare but severe disease in horses and humans and is maintained in an enzootic transmission cycle between songbirds and Culiseta melanura mosquitoes. In 2019, the largest EEEV outbreak in the United States for more than 50 years occurred, centered in the Northeast. To explore the dynamics of the outbreak, we sequenced 80 isolates of EEEV and combined them with existing genomic data. We found that, similar to previous years, cases were driven by multiple independent but short-lived virus introductions into the Northeast from Florida. Once in the ...
Novel holistic pharmacokinetic model applied to plasma and urine concentrations of 2,5-dihydroxybenzene sulphonate following administrations of calcium dobesilate and etamsylate to exercised horses.
Journal of veterinary pharmacology and therapeutics    May 31, 2023   doi: 10.1111/jvp.13387
Paine SW, Harding C, Waller CC, Zemenova J, Viljanto M, Habershon Butcher J, Hincks PR.Calcium dobesilate (CD) is a synthetic venoactive drug used in veterinary medicine to treat equine navicular disease. Etamsylate is a haemostatic agent used in horses for the treatment of exercise-induced pulmonary haemorrhage. Both etamsylate and CD dissociate in the circulatory system with 2,5-HBSA as the active drug. The aim of the research was to be able to provide detection time (DT) advice from pharmacokinetic (PK) studies in Thoroughbred horses to better inform trainers, and their veterinary surgeons, prescribing these substances for treatment of Thoroughbred racehorses. Two (pilot stud...
Detecting fatigue of sport horses with biomechanical gait features using inertial sensors.
PloS one    April 14, 2023   Volume 18, Issue 4 e0284554 doi: 10.1371/journal.pone.0284554
Darbandi H, Munsters C, Parmentier J, Havinga P.Detection of fatigue helps prevent injuries and optimize the performance of horses. Previous studies tried to determine fatigue using physiological parameters. However, measuring the physiological parameters, e.g., plasma lactate, is invasive and can be affected by different factors. In addition, the measurement cannot be done automatically and requires a veterinarian for sample collection. This study investigated the possibility of detecting fatigue non-invasively using a minimum number of body-mounted inertial sensors. Using the inertial sensors, sixty sport horses were measured during walk ...
Performance assessment of an equine metabolomics model for screening a range of anabolic agents.
Metabolomics : Official journal of the Metabolomic Society    April 7, 2023   Volume 19, Issue 4 38 doi: 10.1007/s11306-023-01985-0
Cloteau C, Dervilly G, Loup B, Delcourt V, Kaabia Z, Bagilet F, Groseille G, Dauriac K, Fisher S, Popot MA, Garcia P, Le Bizec B, Bailly-Chouriberry L.Despite their ban, Anabolic Androgenic Steroids (AAS) are considered as the most important threat for equine doping purposes. In the context of controlling such practices in horse racing, metabolomics has emerged as a promising alternative strategy to study the effect of a substance on metabolism and to discover new relevant biomarkers of effect. Based on the monitoring of 4 metabolomics derived candidate biomarkers in urine, a prediction model to screen for testosterone esters abuse was previously developed. The present work focuses on assessing the robustness of the associated method and def...
Predicting the Outcome of Equine Artificial Inseminations Using Chilled Semen.
Animals : an open access journal from MDPI    March 30, 2023   Volume 13, Issue 7 1203 doi: 10.3390/ani13071203
Medica AJ, Lambourne S, Aitken RJ.This study aimed to determine whether an analysis of stallion ejaculate could accurately predict the likelihood of pregnancy resulting from artificial insemination in mares. This study involved 46 inseminations of 41 mares, using 7 standardbred stallions over a 5-week period at an Australian pacing stud. Semen quality was assessed immediately after collection and again after chilling at ~5 °C for 24 h. The assessment involved evaluating ejaculate volume, sperm concentration, and motility parameters using an iSperm Equine portable device. After the initial evaluation, a subpopulation of cells ...
Cerebrospinal fluid and serum proteomic profiles accurately distinguish neuroaxonal dystrophy from cervical vertebral compressive myelopathy in horses.
Journal of veterinary internal medicine    March 16, 2023   Volume 37, Issue 2 689-696 doi: 10.1111/jvim.16660
Donnelly CG, Johnson AL, Reed S, Finno CJ.Cervical vertebral compressive myelopathy (CVCM) and equine neuroaxonal dystrophy/degenerative myeloencephalopathy (eNAD/EDM) are leading causes of spinal ataxia in horses. The conditions can be difficult to differentiate, and there is currently no diagnostic modality that offers a definitive antemortem diagnosis. Objective: Evaluate novel proteomic techniques and machine learning algorithms to predict biomarkers that can aid in the antemortem diagnosis of noninfectious spinal ataxia in horses. Methods: Banked serum and cerebrospinal fluid (CSF) samples from necropsy-confirmed adult eNAD/EDM (...
Risk factors for, and prediction of, exertional heat illness in Thoroughbred racehorses at British racecourses.
Scientific reports    March 14, 2023   Volume 13, Issue 1 3063 doi: 10.1038/s41598-023-27892-x
Trigg LE, Lyons S, Mullan S.The development of exertional heat illness (EHI) is a health, welfare and performance concern for racehorses. However, there has been limited multivariable assessment of the possible risk factors for EHI in racehorses, despite such information being vital for regulators to effectively manage the condition. Consequently, this study aimed to identify the risk factors associated with the occurrence of EHI in Thoroughbred racehorses and assess the ability of the risk factor model to predict the occurrence of EHI in racehorses to assist in early identification. Runners at British racecourses record...
Dynamics of Eastern equine encephalitis virus during the 2019 outbreak in the Northeast United States.
medRxiv : the preprint server for health sciences    March 6, 2023   2023.03.06.23286851 doi: 10.1101/2023.03.06.23286851
Hill V, Koch RT, Bialosuknia SM, Ngo K, Zink SD, Koetzner CA, Maffei JG, Dupuis AP, Backenson PB, Oliver J, Bransfield AB, Misencik MJ, Petruff TA....Eastern equine encephalitis virus (EEEV) causes a rare but severe disease in horses and humans, and is maintained in an enzootic transmission cycle between songbirds and mosquitoes. In 2019, the largest EEEV outbreak in the United States for more than 50 years occurred, centered in the Northeast. To explore the dynamics of the outbreak, we sequenced 80 isolates of EEEV and combined them with existing genomic data. We found that, like previous years, cases were driven by frequent short-lived virus introductions into the Northeast from Florida. Once in the Northeast, we found that Massachusetts...
Deciphering sperm chromatin properties to predict stallion sperm fertility.
Animal reproduction science    February 16, 2023   Volume 250 107200 doi: 10.1016/j.anireprosci.2023.107200
Al-Kass Z, Ntallaris T, Morrell JM, Johannisson A.Although previous studies have examined the relationship between the sperm DNA fragmentation index and fertility in stallions, other aspects of chromatin structure or packaging and fertility have not been explored. In the present study, relationships between fertility and DNA fragmentation index, protamine deficiency, total thiols, free thiols and disulfide bonds in stallion spermatozoa were investigated. Ejaculates (n = 36) were collected from 12 stallions and extended to prepare semen doses for insemination. One dose from each ejaculate was sent to the Swedish University of Agricultural Sc...
Serum amyloid A does not predict non-survival in hospitalised adult horses with acute colitis.
The Veterinary record    February 13, 2023   Volume 192, Issue 7 e2644 doi: 10.1002/vetr.2644
Runge KE, Bak M, Vestergaard A, Staerk-u00d8stergaard J, Jacobsen S, Pihl TH.Predicting non-survival in horses with acute colitis improves early decision making. Therefore, this study aimed to determine the prognostic value of serum amyloid A (SAA) and other clinicopathological and clinical variables in adult horses with acute colitis. Methods: Clinical variables, SAA and other blood biomarkers, including plasma L-lactate (lactate), were assessed in 176 horses with acute colitis. A multivariate model for the prediction of non-survival was constructed. Icelandic horses were analysed separately. Results: Admission SAA was similar in survivors (median 548 mg/L; range...
IgE+ plasmablasts predict the onset of clinical allergy.
Frontiers in immunology    February 2, 2023   Volume 14 1104609 doi: 10.3389/fimmu.2023.1104609
Simonin EM, Babasyan S, Tarsillo J, Wagner B.IgE+ plasmablasts develop following allergen exposure and B cell activation. They secrete IgE and therefore are directly linked to maintain the mechanisms of IgE-mediated allergies. Here, we show that the presence of IgE+ plasmablasts in peripheral blood not only coincides with clinical allergy, but also predicts the upcoming development of clinical disease. Using an equine model of naturally occurring allergy, we compared the timing of allergen exposure, arrival of IgE+ plasmablasts in peripheral blood, and onset of clinical disease. We found that IgE+ plasmablasts predict the development of ...
Predicting the outcome of Thoroughbred stallion matings on the basis of dismount semen sample analyses.
Reproduction (Cambridge, England)    January 18, 2023   Volume 165, Issue 3 281-288 doi: 10.1530/REP-22-0309
Aitken RJ, Lambourne S, Medica AJ.A capacity to predict the likelihood of pregnancy following natural matings would be of considerable benefit to the Thoroughbred horse breeding industry. In this article, we describe a strategy for achieving this outcome through the analysis of dismount samples, that achieved an overall accuracy of 94.6%. The purpose of this study was to determine whether the analysis of dismount semen samples from Thoroughbred stallions could be used to predict whether a given mating would result in a pregnancy. The analysis was based on 143 matings of 141 mares by a cohort of 7 Thoroughbred stallions over a ...
Prediction of continuous and discrete kinetic parameters in horses from inertial measurement units data using recurrent artificial neural networks.
Scientific reports    January 13, 2023   Volume 13, Issue 1 740 doi: 10.1038/s41598-023-27899-4
Parmentier JIM, Bosch S, van der Zwaag BJ, Weishaupt MA, Gmel AI, Havinga PJM, van Weeren PR, Braganca FMS.Vertical ground reaction force (GRFz) measurements are the best tool for assessing horses' weight-bearing lameness. However, collection of these data is often impractical for clinical use. This study evaluates GRFz predicted using data from body-mounted IMUs and long short-term memory recurrent neural networks (LSTM-RNN). Twenty-four clinically sound horses, equipped with IMUs on the upper-body (UB) and each limb, walked and trotted on a GRFz measuring treadmill (TiF). Both systems were time-synchronised. Data from randomly selected 16, 4, and 4 horses formed training, validation, and test dat...
Efficient Development of Gait Classification Models for Five-Gaited Horses Based on Mobile Phone Sensors.
Animals : an open access journal from MDPI    January 3, 2023   Volume 13, Issue 1 183 doi: 10.3390/ani13010183
Davu00edu00f0sson HB, Rees T, u00d3lafsdu00f3ttir MR, Einarsson H.Automated gait classification has traditionally been studied using horse-mounted sensors. However, smartphone-based sensors are more accessible, but the performance of gait classification models using data from such sensors has not been widely known or accessible. In this study, we performed horse gait classification using deep learning models and data from mobile phone sensors located in the rider's pocket. We gathered data from 17 horses and 14 riders. The data were gathered simultaneously from movement sensors in a mobile phone located in the rider's pocket and a gait classification system ...
Validation of inertial measurement units to detect and predict horse behaviour while stabled.
Equine veterinary journal    December 20, 2022   doi: 10.1111/evj.13909
Anderson K, Morrice-West AV, Walmsley EA, Fisher AD, Whitton RC, Hitchens PL.Musculoskeletal injuries are observed in Thoroughbred racehorses and may become catastrophic. Currently, there are limited methods for early detection of such injuries. Most injuries develop gradually due to accumulated damage, providing the opportunity for early detection. Horses experiencing pain or lameness may exhibit changes in behaviour so the development of an objective, real-time system monitoring horse behaviour may enable detection of bone injuries before catastrophic failure. Objective: To determine whether intensive observational methods of assessing horse behaviour can be replaced...
Protein microarray allergen profiling in bronchoalveolar lavage fluid and serum of horses with asthma.
Journal of veterinary internal medicine    December 8, 2022   Volume 37, Issue 1 328-337 doi: 10.1111/jvim.16600
Wyler M, Sage SE, Marti E, White S, Gerber V.The diagnostic value of allergen-specific immunoglobulin E (IgE) in horses with asthma is uncertain. A recently developed protein microarray detected abnormally high latex-specific IgE concentrations in the serum of horses with severe asthma. Objective: The main objective was to characterize the IgE profiles of asthmatic horses in Switzerland using a protein microarray platform in serum and bronchoalveolar lavage fluid (BALF). The secondary objective was to determine whether serological and BALF allergen-specific IgE concentrations correlated. Methods: Forty-four asthmatic and 39 control horse...
Predictors of foaling outcomes in barren and maiden Thoroughbred mares in South Africa.
Journal of the South African Veterinary Association    November 8, 2022   Volume 93, Issue 2 doi: 10.36303/JSAVA.519
Scholtz M, Guthrie AJ, Fosgate GT, Schulman ML.Population demographics and reproductive performance of Thoroughbred populations have been described, but the most recent assessment of the South African Thoroughbred population was reported two decades ago. Objectives of this study were to report demographic data for selected Thoroughbred breeding populations and to analyse selected mare-level variables in association with foaling outcomes, as predictors of reproductive performance. The National Horseracing Authority of Southern Africa's stud health scheme requires annual screening of Thoroughbred stallions, maiden and barren mares for venere...
Clinical predictive models in equine medicine: A systematic review.
Equine veterinary journal    November 8, 2022   Volume 55, Issue 4 573-583 doi: 10.1111/evj.13880
Cummings CO, Krucik DDR, Price E.Clinical predictive models use a patient's baseline demographic and clinical data to make predictions about patient outcomes and have the potential to aid clinical decision making. The extent of equine clinical predictive models is unknown in the literature. Using PubMed and Google Scholar, we systematically reviewed the predictive models currently described for use in equine patients. Models were eligible for inclusion if they were published in a peer-reviewed article as a multivariable model used to predict a clinical/laboratory/imaging outcome in an individual horse or herd. The agreement o...
Hierarchical modeling of elastic moduli of equine hoof wall.
Journal of the mechanical behavior of biomedical materials    October 23, 2022   Volume 136 105529 doi: 10.1016/j.jmbbm.2022.105529
Shiang CA, Bonney C, Lazarus B, Meyers M, Jasiuk I.This study predicts analytically effective elastic moduli of substructures within an equine hoof wall. The hoof wall is represented as a composite material with a hierarchical structure comprised of a sequence of length scales. A bottom-up approach is employed. Thus, the outputs from a lower spatial scale serve as the inputs for the following scale. The models include the Halpin-Tsai model, composite cylinders model, a sutured interface model, and classical laminate theory. The length scales span macroscale, mesoscale, sub-mesoscale, microscale, sub-microscale, and nanoscale. The macroscale re...
Following the niche: the differential impact of the last glacial maximum on four European ungulates.
Communications biology    September 29, 2022   Volume 5, Issue 1 1038 doi: 10.1038/s42003-022-03993-7
Leonardi M, Boschin F, Boscato P, Manica A.Predicting the effects of future global changes on species requires a better understanding of the ecological niche dynamics in response to climate; the large climatic fluctuations of the last 50,000 years can be used as a natural experiment to that aim. Here we test whether the realized niche of horse, aurochs, red deer, and wild boar changed between 47,000 and 7500 years ago using paleoecological modelling over an extensive archaeological database. We show that they all changed their niche, with species-specific responses to climate fluctuations. We also suggest that they survived the climati...
Rapid risk assessment tool (RRAT) to prioritize emerging and re-emerging livestock diseases for risk management.
Frontiers in veterinary science    September 7, 2022   Volume 9 963758 doi: 10.3389/fvets.2022.963758
de Vos CJ, Petie R, van Klink EGM, Swanenburg M.Increasing globalization and international trade contribute to rapid expansion of animal and human diseases. Hence, preparedness is warranted to prevent outbreaks of emerging and re-emerging diseases or detect outbreaks in an early stage. We developed a rapid risk assessment tool (RRAT) to inform risk managers on the incursion risk of multiple livestock diseases, about the main sources for incursion and the change of risk over time. RRAT was built as a relational database to link data on disease outbreaks worldwide, on introduction routes and on disease-specific parameters. The tool was parame...
Improving energy consumption prediction for residential buildings using Modified Wild Horse Optimization with Deep Learning model.
Chemosphere    September 1, 2022   Volume 308, Issue Pt 1 136277 doi: 10.1016/j.chemosphere.2022.136277
Vasanthkumar P, Senthilkumar N, Rao KS, Metwally ASM, Fattah IM, Shaafi T, Murugan VS.The consumption of a significant quantity of energy in buildings has been linked to the emergence of environmental problems that can have unfavourable effects on people. The prediction of energy consumption is widely regarded as an effective method for the conservation of energy and the improvement of decision-making processes for the purpose of lowering energy use. When it comes to the generation of positive results in prediction tasks, the Machine Learning (ML) technique can be considered the most appropriate and applicable strategy. This article presents a Modified Wild Horse Optimization w...
Video analysis of jockey fall characteristics in horse racing.
Journal of science and medicine in sport    August 22, 2022   Volume 25, Issue 11 918-922 doi: 10.1016/j.jsams.2022.08.008
Nylund LE, Sinclair PJ, Hitchens PL, Cobley S.To identify characteristics of jockey falls associated with high-risk landings using a modified Equestrian Fall Assessment Instrument. Methods: Cross-sectional study. Methods: Video footage of 22 flat and 58 jump racing falls (N = 80) which occurred in Great Britain, Ireland, and New Zealand from 2013 to 2018 was systematically analysed using the modified Equestrian Fall Assessment Instrument. Race, horse, and jockey-level factors, including the nature of ground contact (landings), were characterised identifying factors associated with high-risk landings. High-risk landings refer to cases ...
Multi-season transmission model of Eastern Equine Encephalitis.
PloS one    August 17, 2022   Volume 17, Issue 8 e0272130 doi: 10.1371/journal.pone.0272130
Petrucciani A, Yu G, Ventresca M.Eastern Equine Encephalitis (EEE) is an arbovirus that, while it has been known to exist since the 1930's, recently had a spike in cases. This increased prevalence is particularly concerning due to the severity of the disease with 1 in 3 symptomatic patients dying. The cause of this peak is currently unknown but could be due to changes in climate, the virus itself, or host behavior. In this paper we propose a novel multi-season deterministic model of EEE spread and its stochastic counterpart. Models were parameterized using a dataset from the Florida Department of Health with sixteen years of ...
Spatiotemporal Environmental Drivers of Eastern Equine Encephalitis Virus in Central Florida: Towards a Predictive Model for a Lethal Disease.
Journal of medical entomology    August 13, 2022   Volume 59, Issue 5 1805-1816 doi: 10.1093/jme/tjac113
Mundis SJ, Harrison S, Pelley D, Durand S, Ryan SJ.Eastern equine encephalitis virus (EEEV) is a mosquito-borne virus that affects humans and horses, with a high case fatality rate in both species. The virus can be transmitted by several mosquito species and maintained in multiple reservoir hosts, making EEEV dynamics difficult to anticipate. In this study, we identified spatial and temporal factors that precede EEEV detection using sentinel chicken surveillance data from Orange County, Florida, from 2003 to 2017. We first examined the land cover and mosquito species composition associated with sentinel chicken sites. We then fit distributed l...
Infrared spectroscopy of serum fails to identify early biomarker changes in an equine model of traumatic osteoarthritis.
Osteoarthritis and cartilage open    August 8, 2022   Volume 4, Issue 4 100297 doi: 10.1016/j.ocarto.2022.100297
Panizzi L, Vignes M, Dittmer KE, Waterland MR, Rogers CW, Sano H, McIlwraith CW, Pemberton S, Owen M, Riley CB.to determine the accuracy of infrared (IR)-based serum biomarker profiling to differentiate horses with early inflammatory changes associated with a traumatically induced model of equine carpal osteoarthritis (OA) from controls. Methods: unilateral carpal OA was induced in 9 of 17 healthy Thoroughbred fillies, while the remainder served as sham operated controls. Serum samples were obtained before induction of OA (Day 0) and weekly thereafter until Day 63 from both groups. Films of dried serum were created, and IR absorbance spectra acquired. Following pre-processing, partial least squares dis...
Cardiac ion channel expression in the equine model – In-silico prediction utilising RNA sequencing data from mixed tissue samples.
Physiological reports    July 27, 2022   Volume 10, Issue 14 e15273 doi: 10.14814/phy2.15273
Premont A, Saadeh K, Edling C, Lewis R, Marr CM, Jeevaratnam K.Understanding cardiomyocyte ion channel expression is crucial to understanding normal cardiac electrophysiology and underlying mechanisms of cardiac pathologies particularly arrhythmias. Hitherto, equine cardiac ion channel expression has rarely been investigated. Therefore, we aim to predict equine cardiac ion channel gene expression. Raw RNAseq data from normal horses from 9 datasets was retrieved from ArrayExpress and European Nucleotide Archive and reanalysed. The normalised (FPKM) read counts for a gene in a mix of tissue were hypothesised to be the average of the expected expression in e...
1 2 3 13