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Journal of global antimicrobial resistance2020; 23; 137-144; doi: 10.1016/j.jgar.2020.08.006

Relationship between rifampicin resistance and RpoB substitutions of Rhodococcus equi strains isolated in France.

Abstract: Study of the rifampicin resistance of Rhodococcus equi strains isolated from French horses over a 20-year period. Rifampicin susceptibility was tested by disk diffusion (DD) and broth macrodilution methods, and rpoB gene sequencing and MLST were performed on 40 R. equi strains, 50.0% of which were non-susceptible to rifampicin. Consistency of results was observed between rifampicin susceptibility testing and rpoB sequencing. Strains non-susceptible to rifampicin by DD had a substitution at one of the sites (Asp516, His526 and Ser531) frequently encountered and conferring rifampicin resistance. High-level resistance was correlated with His526Asp or Ser531Leu substitutions; low-level resistance was correlated with Asp516Tyr substitution, a novel substitution for R. equi. Strains susceptible to rifampicin by DD showed no substitution in the three sites, except for two strains carrying, respectively, the His526Asn and Asp516Val substitutions (previously correlated with low-level rifampicin resistance). Both strains were isolated from an animal from which ten other strains were also isolated and found to be rifampicin-non-susceptible by DD. MLST showed the presence of 10 STs (including the novel ST43), but no association was observed with rifampicin resistance. This study confirms that certain substitutions in RpoB are more likely to confer high- or low-level rifampicin resistance, describes a new substitution conferring rifampicin resistance in R. equi and suggests non-clonal dissemination of rifampicin-resistant strains in France. Standard DD may miss strains with a low-level rifampicin-resistant substitution; further studies are needed to remedy the absence of R. equi-specific clinical breakpoints.
Publication Date: 2020-09-28 PubMed ID: 32992034DOI: 10.1016/j.jgar.2020.08.006Google Scholar: Lookup
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  • Journal Article

Summary

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This research article focuses on the study of rifampicin resistance in Rhodococcus equi strains isolated from French horses over a two-decade timespan, to understand the relationship between rifampicin resistance and specific RpoB substitutions.

Research Study Explanation

The research revolves around a comprehensive study of the rifampicin resistance observed in Rhodococcus equi strains, gathered from horses based in France, over a period of 20 years. To shed light on the details:

  • The investigation began by testing the susceptibility of these strains towards rifampicin; two methods were employed for this – disk diffusion (DD) and broth macrodilution.
  • The study centered on 40 R. equi strains wherein nearly half demonstrated non-susceptibility towards rifampicin.
  • The same strains also went through rpoB gene sequencing as well as multilocus sequence typing (MLST).
  • The study found a consistent correlation of results between rifampicin susceptibility testing and rpoB sequencing.
  • Strains that were non-susceptible to rifampicin by DD exhibited a substitution at one of the specified sites (Asp516, His526, or Ser531) known to confer rifampicin resistance.

Key Findings

The research article presented the following key findings:

  • High-level resistance to rifampicin was linked with either His526Asp or Ser531Leu substitutions.
  • Low-level resistance, on the other hand, was associated with the Asp516Tyr substitution, a uniquely documented substitution specific to R. equi.
  • Strains that were susceptible to rifampicin by DD demonstrated no substitution except for two strains that had His526Asn and Asp516Val substitutions, which have previously been linked to low-level rifampicin resistance. These exceptions were isolated from an animal from which ten other strains, all non-susceptible to rifampicin by DD, were isolated.
  • The MLST test revealed 10 sequence types (STs). Interestingly, these STs did not demonstrate any observable connection with rifampicin resistance.
  • The study suggests that there appears to be a non-clonal dissemination of rifampicin-resistant strains across France.

Conclusions and Future Research Directions

The research study concluded that certain RpoB substitutions could possibly confer high or low-level rifampicin resistance, along with describing a new substitution found in R. equi that confers rifampicin resistance. However, it also suggests that the standard DD method could possibly miss strains with low-level rifampicin-resistant substitutions. The authors recommend further research in this field to address the absence of R. equi-specific clinical breakpoints.

Cite This Article

APA
Petry S, Sévin C, Kozak S, Foucher N, Laugier C, Linster M, Breuil MF, Dupuis MC, Hans A, Duquesne F, Tapprest J. (2020). Relationship between rifampicin resistance and RpoB substitutions of Rhodococcus equi strains isolated in France. J Glob Antimicrob Resist, 23, 137-144. https://doi.org/10.1016/j.jgar.2020.08.006

Publication

ISSN: 2213-7173
NlmUniqueID: 101622459
Country: Netherlands
Language: English
Volume: 23
Pages: 137-144
PII: S2213-7165(20)30211-3

Researcher Affiliations

Petry, Sandrine
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France. Electronic address: sandrine.petry@anses.fr.
Sévin, Corinne
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Kozak, Sofia
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Foucher, Nathalie
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Laugier, Claire
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Linster, Maud
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Breuil, Marie-France
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Dupuis, Marie-Capucine
  • VETODIAG, Berville L'Oudon, France.
Hans, Aymeric
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Duquesne, Fabien
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.
Tapprest, Jackie
  • ANSES, Laboratory for Animal Health in Normandy, Physiopathology and Epidemiology of Equine Diseases Unit, Goustranville, France.

MeSH Terms

  • Animals
  • France
  • Horses
  • Microbial Sensitivity Tests
  • Multilocus Sequence Typing
  • Rhodococcus
  • Rhodococcus equi / genetics
  • Rifampin / pharmacology

Citations

This article has been cited 4 times.
  1. Song Y, Xu X, Huang Z, Xiao Y, Yu K, Jiang M, Yin S, Zheng M, Meng H, Han Y, Wang Y, Wang D, Wei Q. Genomic Characteristics Revealed Plasmid-Mediated Pathogenicity and Ubiquitous Rifamycin Resistance of Rhodococcus equi.. Front Cell Infect Microbiol 2022;12:807610.
    doi: 10.3389/fcimb.2022.807610pubmed: 35252029google scholar: lookup
  2. Zhao Y, Zhu Y, Liu B, Mi J, Li N, Zhao W, Wu R, Holyoak GR, Li J, Liu D, Zeng S, Wang Y. Antimicrobial Susceptibility of Bacterial Isolates from Donkey Uterine Infections, 2018-2021.. Vet Sci 2022 Feb 5;9(2).
    doi: 10.3390/vetsci9020067pubmed: 35202320google scholar: lookup
  3. Erol E, Scortti M, Fortner J, Patel M, Vázquez-Boland JA. Antimicrobial Resistance Spectrum Conferred by pRErm46 of Emerging Macrolide (Multidrug)-Resistant Rhodococcus equi.. J Clin Microbiol 2021 Sep 20;59(10):e0114921.
    doi: 10.1128/JCM.01149-21pubmed: 34319806google scholar: lookup
  4. Álvarez-Narváez S, Huber L, Giguère S, Hart KA, Berghaus RD, Sanchez S, Cohen ND. Epidemiology and Molecular Basis of Multidrug Resistance in Rhodococcus equi.. Microbiol Mol Biol Rev 2021 May 19;85(2).
    doi: 10.1128/MMBR.00011-21pubmed: 33853933google scholar: lookup