The fecal bacterial microbiota of healthy and sick newborn foals.
Abstract: The fecal bacterial microbiota of normal foals and foals with enterocolitis has been characterized using next-generation sequencing technology; however, there are no reports investigating the gut microbiota in foals hospitalized for other perinatal diseases. Objective: To describe and compare the fecal bacterial microbiota in healthy and sick foals using next-generation sequencing techniques. Methods: Hospitalized (17) and healthy foals (21). Methods: Case-control study. Fecal samples were collected from healthy and sick foals on admission. Sick foals were further divided into sick nonseptic (SNS, n = 9) and septic (n = 8) foals. After extraction of DNA, the V4 region of the 16 S rRNA gene was amplified using a PCR assay, and the final product was sequenced with an Illumina MiSeq. Results: Diversity was significantly lower in healthy than sick foals (P .05). Bacterial membership (AMOVA, P = .06) and structure (AMOVA, P = .33) were not different between healthy and sick foals. Enterobacteriaceae, Enterococcus, and Streptococcus were among the 5 more abundant taxa identified in both groups. Conclusions: Higher fecal microbiota diversity in sick than healthy foals might suggest a high exposure to environmental microorganisms or an unstable colonic microbiota. The presence of microorganisms causing bacteremia in foals in a high relative abundance in the feces of foals suggests the intestine might play an essential role in the causation of bacteremia in foals.
© 2022 The Authors. Journal of Veterinary Internal Medicine published by Wiley Periodicals LLC on behalf of American College of Veterinary Internal Medicine.
Publication Date: 2022-12-14 PubMed ID: 36519210PubMed Central: PMC9889700DOI: 10.1111/jvim.16596Google Scholar: Lookup
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Summary
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The research investigates the differences in fecal bacterial microbiota between healthy and sick newborn foals with the help of next-generation sequencing techniques. It concludes that the diversity of fecal microbiota is significantly higher in sick foals, indicative of increased exposure to environmental microorganisms or unstable colonic microbiota.
Objectives and Methods of the Study
- The goal of this research was to characterize and compare the fecal bacterial microbiota in healthy and ill foals using next-generation sequencing techniques. Prior research has explored this in relation to enterocolitis, but not for other perinatal diseases in hospitalized foals.
- The method involved a case-control study where fecal samples were collected from both healthy and ill foals upon their admission to the hospital.
- Ill foals were further subdivided into Non-Septic (SNS) and septic categories.
- DNA was extracted from these samples and then a particular region of the 16 S rRNA gene was amplified via PCR assay for sequencing with Illumina MiSeq.
Findings of the Research
- The research found that the diversity of fecal microbiota was significantly lower in healthy foals when compared to sick foals. The latter might be a result of a high exposure to environmental microbes or an unstable colonic microbiota.
- Despite the varying health statuses, the bacterial membership and structure of the fecal microbiota in healthy, septic, and SNS foals were found to be similar.
- Enterobacteriaceae, Enterococcus, and Streptococcus were identified among the five most abundant taxa in both healthy and sick foals.
- The bacterial membership and structure did not significantly differ between healthy and sick foals.
Conclusions Derived from the Research
- The finding of high microbial diversity in sick foals suggests that these foals have been exposed to more environmental microorganisms or that they have an unstable colonic microbiota.
- The abundance of disease-causing microorganisms in the feces of sick foals points towards the possibility that the intestine plays a key role in causing bacteremia in foals.
Cite This Article
APA
Gomez DE, Wong D, MacNicol J, Dembek K.
(2022).
The fecal bacterial microbiota of healthy and sick newborn foals.
J Vet Intern Med, 37(1), 315-322.
https://doi.org/10.1111/jvim.16596 Publication
Researcher Affiliations
- Department of Clinical Studies, Ontario Veterinary College, University of Guelph, Guelph, Ontario, Canada.
- Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA.
- Department of Animal Biosciences, Ontario Agriculture College, University of Guelph, Guelph, Ontario, Canada.
- Department of Clinical Sciences, College of Veterinary Medicine, North Carolina State University, Raleigh, North Carolina, USA.
MeSH Terms
- Pregnancy
- Female
- Animals
- Horses
- Animals, Newborn
- Case-Control Studies
- Feces / microbiology
- Microbiota
- Bacteria / genetics
- Horse Diseases
- Bacteremia / veterinary
Conflict of Interest Statement
Authors declare no conflict of interest.
References
This article includes 58 references
- Sanchez LC, Giguère S, Lester GD. Factors associated with survival of neonatal foals with bacteremia and racing performance of surviving Thoroughbreds: 423 cases (1982-2007).. J Am Vet Med Assoc 2008 Nov 1;233(9):1446-52.
- Theelen MJ, Wilson WD, Edman JM, Magdesian KG, Kass PH. Temporal trends in prevalence of bacteria isolated from foals with sepsis: 1979-2010.. Equine Vet J 2014 Mar;46(2):169-73.
- Theelen MJP, Wilson WD, Byrne BA, Edman JM, Kass PH, Mughini-Gras L, Magdesian KG. Differences in isolation rate and antimicrobial susceptibility of bacteria isolated from foals with sepsis at admission and after ≥48 hours of hospitalization.. J Vet Intern Med 2020 Mar;34(2):955-963.
- Russell CM, Axon JE, Blishen A, Begg AP. Blood culture isolates and antimicrobial sensitivities from 427 critically ill neonatal foals.. Aust Vet J 2008 Jul;86(7):266-71.
- Hollis AR, Wilkins PA, Palmer JE, Boston RC. Bacteremia in equine neonatal diarrhea: a retrospective study (1990-2007).. J Vet Intern Med 2008 Sep-Oct;22(5):1203-9.
- Sanchez LC. Equine neonatal sepsis.. Vet Clin North Am Equine Pract 2005 Aug;21(2):273-93, v.
- Stewart AJ, Hinchcliff KW, Saville WJ, Jose-Cunilleras E, Hardy J, Kohn CW, Reed SM, Kowalski JJ. Actinobacillus sp. bacteremia in foals: clinical signs and prognosis.. J Vet Intern Med 2002 Jul-Aug;16(4):464-71.
- Borba LA, Nogueira CEW, Bruhn FRP, da Silva GC, Feijó LS, Canisso IF, Curcio BDR. Peripheral blood markers of sepsis in foals born from mares with experimentally induced ascending placentitis.. Vet Rec 2020 Jul;187(1):29.
- Müller V, Curcio BR, Toribio RE, Feijó LS, Borba LA, Canisso IF, Nogueira CEW. Cortisol, progesterone, 17αOHprogesterone, and pregnenolone in foals born from mare's hormone-treated for experimentally induced ascending placentitis.. Theriogenology 2019 Jan 1;123:139-144.
- Kim ET, Lee SJ, Kim TY, Lee HG, Atikur RM, Gu BH, Kim DH, Park BY, Son JK, Kim MH. Dynamic Changes in Fecal Microbial Communities of Neonatal Dairy Calves by Aging and Diarrhea.. Animals (Basel) 2021 Apr 13;11(4).
- Jost T, Lacroix C, Braegger CP, Chassard C. New insights in gut microbiota establishment in healthy breast fed neonates.. PLoS One 2012;7(8):e44595.
- Mackie RI, Sghir A, Gaskins HR. Developmental microbial ecology of the neonatal gastrointestinal tract.. Am J Clin Nutr 1999 May;69(5):1035S-1045S.
- Husso A, Jalanka J, Alipour MJ, Huhti P, Kareskoski M, Pessa-Morikawa T, Iivanainen A, Niku M. The composition of the perinatal intestinal microbiota in horse.. Sci Rep 2020 Jan 16;10(1):441.
- Costa MC, Stämpfli HR, Allen-Vercoe E, Weese JS. Development of the faecal microbiota in foals.. Equine Vet J 2016 Nov;48(6):681-688.
- Quercia S, Freccero F, Castagnetti C, Soverini M, Turroni S, Biagi E, Rampelli S, Lanci A, Mariella J, Chinellato E, Brigidi P, Candela M. Early colonisation and temporal dynamics of the gut microbial ecosystem in Standardbred foals.. Equine Vet J 2019 Mar;51(2):231-237.
- Lukás F, Koppová I, Kudrna V, Kopecný J. Postnatal development of bacterial population in the gastrointestinal tract of calves.. Folia Microbiol (Praha) 2007;52(1):99-104.
- Klein-Jöbstl D, Schornsteiner E, Mann E, Wagner M, Drillich M, Schmitz-Esser S. Pyrosequencing reveals diverse fecal microbiota in Simmental calves during early development.. Front Microbiol 2014;5:622.
- Alipour MJ, Jalanka J, Pessa-Morikawa T, Kokkonen T, Satokari R, Hynönen U, Iivanainen A, Niku M. The composition of the perinatal intestinal microbiota in cattle.. Sci Rep 2018 Jul 11;8(1):10437.
- Madan JC, Salari RC, Saxena D, Davidson L, O'Toole GA, Moore JH, Sogin ML, Foster JA, Edwards WH, Palumbo P, Hibberd PL. Gut microbial colonisation in premature neonates predicts neonatal sepsis.. Arch Dis Child Fetal Neonatal Ed 2012 Nov;97(6):F456-62.
- Taft DH, Ambalavanan N, Schibler KR, Yu Z, Newburg DS, Deshmukh H, Ward DV, Morrow AL. Center Variation in Intestinal Microbiota Prior to Late-Onset Sepsis in Preterm Infants.. PLoS One 2015;10(6):e0130604.
- Mai V, Torrazza RM, Ukhanova M, Wang X, Sun Y, Li N, Shuster J, Sharma R, Hudak ML, Neu J. Distortions in development of intestinal microbiota associated with late onset sepsis in preterm infants.. PLoS One 2013;8(1):e52876.
- Alverdy JC, Krezalek MA. Collapse of the Microbiome, Emergence of the Pathobiome, and the Immunopathology of Sepsis.. Crit Care Med 2017 Feb;45(2):337-347.
- Brewer BD, Koterba AM. Development of a scoring system for the early diagnosis of equine neonatal sepsis.. Equine Vet J 1988 Jan;20(1):18-22.
- Tyma JF, Epstein KL, Whitfield-Cargile CM, Cohen ND, Giguère S. Investigation of effects of omeprazole on the fecal and gastric microbiota of healthy adult horses.. Am J Vet Res 2019 Jan;80(1):79-86.
- Marotz C, Amir A, Humphrey G, Gaffney J, Gogul G, Knight R. DNA extraction for streamlined metagenomics of diverse environmental samples.. Biotechniques 2017 Jun 1;62(6):290-293.
- Gomez DE, Li L, Goetz H, MacNicol J, Gamsjaeger L, Renaud DL. Calf Diarrhea Is Associated With a Shift From Obligated to Facultative Anaerobes and Expansion of Lactate-Producing Bacteria.. Front Vet Sci 2022;9:846383.
- Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.. Appl Environ Microbiol 2013 Sep;79(17):5112-20.
- Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.. Appl Environ Microbiol 2009 Dec;75(23):7537-41.
- Good IJ. The population frequencies of species and the estimation of population parameters. Biometrika 1953;40(3–4):237‐264.
- Benjamini Y, Hochberg Y, Benjamini YHY. Benjamini and Y FDR.pdf. J Roy Stat Soc Ser B (Methodol) 1995;57:289‐300.
- Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. Metagenomic biomarker discovery and explanation.. Genome Biol 2011 Jun 24;12(6):R60.
- Jaccard P. Nouvelles recherches sur la distribution florale. Bull Soc Vaud Sci Nat 1908;44:223‐270.
- Yue JC, Clayton MK. A similarity measure based on species proportions. Commun Stat Methods 2005;34(11):2123‐2131.
- Holmes I, Harris K, Quince C. Dirichlet multinomial mixtures: generative models for microbial metagenomics.. PLoS One 2012;7(2):e30126.
- Marsh PS, Palmer JE. Bacterial isolates from blood and their susceptibility patterns in critically ill foals: 543 cases (1991-1998).. J Am Vet Med Assoc 2001 May 15;218(10):1608-10.
- Corley KT, Pearce G, Magdesian KG, Wilson WD. Bacteraemia in neonatal foals: clinicopathological differences between Gram-positive and Gram-negative infections, and single organism and mixed infections.. Equine Vet J 2007 Jan;39(1):84-9.
- Godden S. Colostrum management for dairy calves.. Vet Clin North Am Food Anim Pract 2008 Mar;24(1):19-39.
- Wilson WD, Mihalyi JE, Hussey S, Lunn DP. Passive transfer of maternal immunoglobulin isotype antibodies against tetanus and influenza and their effect on the response of foals to vaccination.. Equine Vet J 2001 Nov;33(7):644-50.
- Wagner B, Flaminio JB, Hillegas J, Leibold W, Erb HN, Antczak DF. Occurrence of IgE in foals: evidence for transfer of maternal IgE by the colostrum and late onset of endogenous IgE production in the horse.. Vet Immunol Immunopathol 2006 Apr 15;110(3-4):269-78.
- Perkins GA, Goodman LB, Wimer C, Freer H, Babasyan S, Wagner B. Maternal T-lymphocytes in equine colostrum express a primarily inflammatory phenotype.. Vet Immunol Immunopathol 2014 Oct 15;161(3-4):141-50.
- Jeffcott LB. Passive immunity and its transfer with special reference to the horse.. Biol Rev Camb Philos Soc 1972 Nov;47(4):439-64.
- Sangild PT, Holtug K, Diernaes L, Schmidt M, Skadhauge E. Birth and prematurity influence intestinal function in the newborn pig.. Comp Biochem Physiol A Physiol 1997 Oct;118(2):359-61.
- Sangild PT, Petersen YM, Schmidt M, Elnif J, Petersen TK, Buddington RK, Greisen G, Michaelsen KF, Burrin DG. Preterm birth affects the intestinal response to parenteral and enteral nutrition in newborn pigs.. J Nutr 2002 Sep;132(9):2673-81.
- Tyler H, Ramsey H. Hypoxia in neonatal calves: effect on intestinal transport of immunoglobulins.. J Dairy Sci 1991 Jun;74(6):1953-6.
- Erwin SJ, Blikslager AT, Ziegler AL. Age-Dependent Intestinal Repair: Implications for Foals with Severe Colic.. Animals (Basel) 2021 Nov 23;11(12).
- Uzal FA, Arroyo LG, Navarro MA, Gomez DE, Asín J, Henderson E. Bacterial and viral enterocolitis in horses: a review.. J Vet Diagn Invest 2022 May;34(3):354-375.
- Lozupone CA, Stombaugh JI, Gordon JI, Jansson JK, Knight R. Diversity, stability and resilience of the human gut microbiota.. Nature 2012 Sep 13;489(7415):220-30.
- Costa MC, Arroyo LG, Allen-Vercoe E, Stämpfli HR, Kim PT, Sturgeon A, Weese JS. Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3-V5 region of the 16S rRNA gene.. PLoS One 2012;7(7):e41484.
- van Nood E, Vrieze A, Nieuwdorp M, Fuentes S, Zoetendal EG, de Vos WM, Visser CE, Kuijper EJ, Bartelsman JF, Tijssen JG, Speelman P, Dijkgraaf MG, Keller JJ. Duodenal infusion of donor feces for recurrent Clostridium difficile.. N Engl J Med 2013 Jan 31;368(5):407-15.
- Ziese AL, Suchodolski JS. Impact of Changes in Gastrointestinal Microbiota in Canine and Feline Digestive Diseases.. Vet Clin North Am Small Anim Pract 2021 Jan;51(1):155-169.
- Costa MC, Silva G, Ramos RV, Staempfli HR, Arroyo LG, Kim P, Weese JS. Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments in horses.. Vet J 2015 Jul;205(1):74-80.
- Song Y, Malmuthuge N, Li F, Guan LL. Colostrum feeding shapes the hindgut microbiota of dairy calves during the first 12 h of life.. FEMS Microbiol Ecol 2019 Jan 1;95(1).
- Ma T, O'Hara E, Song Y, Fischer AJ, He Z, Steele MA, Guan LL. Altered mucosa-associated microbiota in the ileum and colon of neonatal calves in response to delayed first colostrum feeding.. J Dairy Sci 2019 Aug;102(8):7073-7086.
- Gomez DE, Galvão KN, Rodriguez-Lecompte JC, Costa MC. The Cattle Microbiota and the Immune System: An Evolving Field.. Vet Clin North Am Food Anim Pract 2019 Nov;35(3):485-505.
- Taylor S. A review of equine sepsis.. Equine Vet Educ 2015 Feb;27(2):99-109.
- Shreffler J, Huecker MR. Type I and Type II Errors and Statistical Power.. 2023 Jan;.
- Kelly BJ, Gross R, Bittinger K, Sherrill-Mix S, Lewis JD, Collman RG, Bushman FD, Li H. Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA.. Bioinformatics 2015 Aug 1;31(15):2461-8.
- Tripathi A, Marotz C, Gonzalez A, Vázquez-Baeza Y, Song SJ, Bouslimani A, McDonald D, Zhu Q, Sanders JG, Smarr L, Dorrestein PC, Knight R. Are microbiome studies ready for hypothesis-driven research?. Curr Opin Microbiol 2018 Aug;44:61-69.
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