A high-resolution comparative radiation hybrid map of equine chromosome 4q12-q22.
Abstract: In this study, we present a comprehensive 5000-rad radiation hybrid map of a 40-cM region on equine chromosome 4 (ECA4) that contains quantitative trait loci for equine osteochondrosis. We mapped 29 gene-associated sequence tagged site markers using primers designed from equine expressed sequence tags or BAC clones in the ECA4q12-q22 region. Three blocks of conserved synteny, showing two chromosomal breakpoints, were identified in the segment of ECA4q12-q22. Markers from other segments of HSA7q mapped to ECA13p and ECA4p, and a region of HSA7p was homologous to ECA13p. Therefore, we have improved the resolution of the human-equine comparative map, which allows the identification of candidate genes underlying traits of interest.
Publication Date: 2006-09-19 PubMed ID: 16978184DOI: 10.1111/j.1365-2052.2006.01510.xGoogle Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Comparative Study
- Journal Article
- Research Support
- Non-U.S. Gov't
Summary
This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.
The research article presents a refined map of a region in the equine chromosome linked to osteochondrosis. The improved map allows for better identification of genes responsible for this equine trait.
Overview of the Study
- The researchers worked on a refined version of a 5000-rad radiation hybrid map of a 40-cM region on the equine chromosome 4 (ECA4).
- The region of interest has been associated with quantitative trait loci for equine osteochondrosis, a joint condition common in horses.
Methodology and Findings
- The team mapped 29 gene-associated sequence tagged site markers using primers. These primers were designed from equine expressed sequence tags or BAC clones in the ECA4q12-q22 region.
- Their efforts resulted in the identification of three blocks of conserved synteny showing two chromosomal breakpoints in the ECA4q12-q22 segment.
Comparative Map and Further Findings
- Markers from other segments of HSA7q were found to have mapped to ECA13p and ECA4p.
- They also found that a region of HSA7p was homologous to ECA13p.
Conclusions and Implications
- The researchers successfully improved the resolution of the human-equine comparative map.
- This refinement allows for better identification of candidate genes that are associated with traits of interest.
- The study provides an important contribution to the genetics of diseases in horses, specifically osteochondrosis, and aids in the understanding of the structure of equine chromosomes.
Cite This Article
APA
Dierks C, Mömke S, Drögemüller C, Leeb T, Chowdhary BP, Distl O.
(2006).
A high-resolution comparative radiation hybrid map of equine chromosome 4q12-q22.
Anim Genet, 37(5), 513-517.
https://doi.org/10.1111/j.1365-2052.2006.01510.x Publication
Researcher Affiliations
- Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover, Foundation, Bünteweg 17p, 30559 Hannover, Germany.
MeSH Terms
- Animals
- Chromosomes, Artificial, Bacterial
- Chromosomes, Mammalian
- Expressed Sequence Tags
- Horse Diseases / genetics
- Horses / genetics
- Humans
- Microsatellite Repeats
- Osteochondritis / genetics
- Osteochondritis / veterinary
- Quantitative Trait Loci
- Radiation Hybrid Mapping
- Synteny
Citations
This article has been cited 5 times.- Hassan M, Yasir M, Shahzadi S, Kloczkowski A. Exploration of Potential Ewing Sarcoma Drugs from FDA-Approved Pharmaceuticals through Computational Drug Repositioning, Pharmacogenomics, Molecular Docking, and MD Simulation Studies. ACS Omega 2022 Jun 14;7(23):19243-19260.
- Yun J, Oyungerel B, Kong HS. Genetic diversity and population structure of Mongolian regional horses with 14 microsatellite markers. Anim Biosci 2022 Aug;35(8):1121-1128.
- Raudsepp T, Gustafson-Seabury A, Durkin K, Wagner ML, Goh G, Seabury CM, Brinkmeyer-Langford C, Lee EJ, Agarwala R, Stallknecht-Rice E, Schäffer AA, Skow LC, Tozaki T, Yasue H, Penedo MC, Lyons LA, Khazanehdari KA, Binns MM, MacLeod JN, Distl O, Guérin G, Leeb T, Mickelson JR, Chowdhary BP. A 4,103 marker integrated physical and comparative map of the horse genome. Cytogenet Genome Res 2008;122(1):28-36.
- Chowdhary BP, Raudsepp T. The horse genome derby: racing from map to whole genome sequence. Chromosome Res 2008;16(1):109-27.
- Dierks C, Löhring K, Lampe V, Wittwer C, Drögemüller C, Distl O. Genome-wide search for markers associated with osteochondrosis in Hanoverian warmblood horses. Mamm Genome 2007 Oct;18(10):739-47.
Use Nutrition Calculator
Check if your horse's diet meets their nutrition requirements with our easy-to-use tool Check your horse's diet with our easy-to-use tool
Talk to a Nutritionist
Discuss your horse's feeding plan with our experts over a free phone consultation Discuss your horse's diet over a phone consultation
Submit Diet Evaluation
Get a customized feeding plan for your horse formulated by our equine nutritionists Get a custom feeding plan formulated by our nutritionists