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Animal genetics2006; 37(5); 513-517; doi: 10.1111/j.1365-2052.2006.01510.x

A high-resolution comparative radiation hybrid map of equine chromosome 4q12-q22.

Abstract: In this study, we present a comprehensive 5000-rad radiation hybrid map of a 40-cM region on equine chromosome 4 (ECA4) that contains quantitative trait loci for equine osteochondrosis. We mapped 29 gene-associated sequence tagged site markers using primers designed from equine expressed sequence tags or BAC clones in the ECA4q12-q22 region. Three blocks of conserved synteny, showing two chromosomal breakpoints, were identified in the segment of ECA4q12-q22. Markers from other segments of HSA7q mapped to ECA13p and ECA4p, and a region of HSA7p was homologous to ECA13p. Therefore, we have improved the resolution of the human-equine comparative map, which allows the identification of candidate genes underlying traits of interest.
Publication Date: 2006-09-19 PubMed ID: 16978184DOI: 10.1111/j.1365-2052.2006.01510.xGoogle Scholar: Lookup
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  • Comparative Study
  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

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The research article presents a refined map of a region in the equine chromosome linked to osteochondrosis. The improved map allows for better identification of genes responsible for this equine trait.

Overview of the Study

  • The researchers worked on a refined version of a 5000-rad radiation hybrid map of a 40-cM region on the equine chromosome 4 (ECA4).
  • The region of interest has been associated with quantitative trait loci for equine osteochondrosis, a joint condition common in horses.

Methodology and Findings

  • The team mapped 29 gene-associated sequence tagged site markers using primers. These primers were designed from equine expressed sequence tags or BAC clones in the ECA4q12-q22 region.
  • Their efforts resulted in the identification of three blocks of conserved synteny showing two chromosomal breakpoints in the ECA4q12-q22 segment.

Comparative Map and Further Findings

  • Markers from other segments of HSA7q were found to have mapped to ECA13p and ECA4p.
  • They also found that a region of HSA7p was homologous to ECA13p.

Conclusions and Implications

  • The researchers successfully improved the resolution of the human-equine comparative map.
  • This refinement allows for better identification of candidate genes that are associated with traits of interest.
  • The study provides an important contribution to the genetics of diseases in horses, specifically osteochondrosis, and aids in the understanding of the structure of equine chromosomes.

Cite This Article

APA
Dierks C, Mömke S, Drögemüller C, Leeb T, Chowdhary BP, Distl O. (2006). A high-resolution comparative radiation hybrid map of equine chromosome 4q12-q22. Anim Genet, 37(5), 513-517. https://doi.org/10.1111/j.1365-2052.2006.01510.x

Publication

ISSN: 0268-9146
NlmUniqueID: 8605704
Country: England
Language: English
Volume: 37
Issue: 5
Pages: 513-517

Researcher Affiliations

Dierks, C
  • Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover, Foundation, Bünteweg 17p, 30559 Hannover, Germany.
Mömke, S
    Drögemüller, C
      Leeb, T
        Chowdhary, B P
          Distl, O

            MeSH Terms

            • Animals
            • Chromosomes, Artificial, Bacterial
            • Chromosomes, Mammalian
            • Expressed Sequence Tags
            • Horse Diseases / genetics
            • Horses / genetics
            • Humans
            • Microsatellite Repeats
            • Osteochondritis / genetics
            • Osteochondritis / veterinary
            • Quantitative Trait Loci
            • Radiation Hybrid Mapping
            • Synteny

            Citations

            This article has been cited 5 times.
            1. Hassan M, Yasir M, Shahzadi S, Kloczkowski A. Exploration of Potential Ewing Sarcoma Drugs from FDA-Approved Pharmaceuticals through Computational Drug Repositioning, Pharmacogenomics, Molecular Docking, and MD Simulation Studies. ACS Omega 2022 Jun 14;7(23):19243-19260.
              doi: 10.1021/acsomega.2c00518pubmed: 35721972google scholar: lookup
            2. Yun J, Oyungerel B, Kong HS. Genetic diversity and population structure of Mongolian regional horses with 14 microsatellite markers. Anim Biosci 2022 Aug;35(8):1121-1128.
              doi: 10.5713/ab.21.0497pubmed: 35240022google scholar: lookup
            3. Raudsepp T, Gustafson-Seabury A, Durkin K, Wagner ML, Goh G, Seabury CM, Brinkmeyer-Langford C, Lee EJ, Agarwala R, Stallknecht-Rice E, Schäffer AA, Skow LC, Tozaki T, Yasue H, Penedo MC, Lyons LA, Khazanehdari KA, Binns MM, MacLeod JN, Distl O, Guérin G, Leeb T, Mickelson JR, Chowdhary BP. A 4,103 marker integrated physical and comparative map of the horse genome. Cytogenet Genome Res 2008;122(1):28-36.
              doi: 10.1159/000151313pubmed: 18931483google scholar: lookup
            4. Chowdhary BP, Raudsepp T. The horse genome derby: racing from map to whole genome sequence. Chromosome Res 2008;16(1):109-27.
              doi: 10.1007/s10577-008-1204-zpubmed: 18274866google scholar: lookup
            5. Dierks C, Löhring K, Lampe V, Wittwer C, Drögemüller C, Distl O. Genome-wide search for markers associated with osteochondrosis in Hanoverian warmblood horses. Mamm Genome 2007 Oct;18(10):739-47.
              doi: 10.1007/s00335-007-9058-9pubmed: 17906894google scholar: lookup