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Journal of virological methods2004; 122(1); 49-56; doi: 10.1016/j.jviromet.2004.08.002

African horsesickness virus serotyping and identification of multiple co-infecting serotypes with a single genome segment 2 RT-PCR amplification and reverse line blot hybridization.

Abstract: Since protection against African horsesickness (AHS) is serotype-specific, rapid serotyping of AHSV is crucial to identify the correct vaccine serotype for efficient control of the spread of AHS outbreaks, especially when they occur in non-endemic regions. This paper describes the first one-day serotyping procedure that requires only a single RT-PCR and hybridization and which can identify multiple serotypes in mixed infections in one assay. The same region of genome segment 2 of all nine AHSV serotypes is amplified in a single RT-PCR. A universal primer set, designed to amplify the 5'-terminal 521-553bp of genome segment 2 of all of the nine AHSV serotypes with one reaction, was used to generate serotype-specific probes from dsRNA prepared from infected tissue cultures or organ samples. These probes hybridized serotype-specifically with immobilized genome segment 2 cDNA of the nine AHSV reference serotypes in a checkerboard reverse line blot format. All nine AHSV reference and the seven vaccine strains and field viruses isolated up to 28 years apart could be serotyped accurately within a day. The sensitivity of the method is 1pg dsRNA which is sufficient to serotype AHSV directly from lung and spleen specimens of infected horses.
Publication Date: 2004-10-19 PubMed ID: 15488620DOI: 10.1016/j.jviromet.2004.08.002Google Scholar: Lookup
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Summary

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This study presents a quick and efficient procedure for identifying the specific serotype of African horsesickness virus (AHSV), a task vital for selecting the appropriate vaccine during an outbreak. This one-day method can scan for multiple serotypes at once and even detect the virus directly from infected horse tissues.

Introduction

  • The African horsesickness virus (AHSV) is a contagious and sometimes lethal disease that affects horses. Its control relies heavily on the identification of the AHSV serotype, as different types require different vaccines.
  • Traditionally, the serotyping methods have been laborious and lengthy. This study introduces a one-day serotyping procedure that can identify multiple serotypes in a single assay.

Methodology

  • This novel process involves amplifying the same region of genome segment 2 of all nine AHSV serotypes in a single RT-PCR reaction.
  • The researchers designed a universal primer set that could amplify a particular section of the AHSV genome from all nine serotypes. They then created serotype-specific probes using dsRNA from infected tissue cultures or organ samples.
  • These probes were then used to detect the presence of specific serotypes by hybridizing with immobilized AHSV genome cDNA in a checkerboard reverse line blot format.

Results

  • This method proved successful in accurately identifying all nine reference AHSV serotypes and several vaccine and field strains isolated over decades.
  • The entire process can complete within a day, dramatically reducing the time needed for serotyping.
  • The sensitivity of the method is such that it can obtain enough information from just 1pg dsRNA to identify the AHSV serotype in the lung and spleen tissue samples taken from infected horses directly.

Conclusion

  • This study presents a reliable, rapid, and efficient serotyping procedure that can aid in the timely control of AHS outbreaks.
  • By quickly identifying the specific serotype or types present in an outbreak, this method can facilitate the selection of the appropriate vaccine, crucial for preventing the disease’s spread in both endemic and non-endemic regions.

Cite This Article

APA
Koekemoer JJ, Dijk AA. (2004). African horsesickness virus serotyping and identification of multiple co-infecting serotypes with a single genome segment 2 RT-PCR amplification and reverse line blot hybridization. J Virol Methods, 122(1), 49-56. https://doi.org/10.1016/j.jviromet.2004.08.002

Publication

ISSN: 0166-0934
NlmUniqueID: 8005839
Country: Netherlands
Language: English
Volume: 122
Issue: 1
Pages: 49-56

Researcher Affiliations

Koekemoer, J J O
  • Biochemistry Division, Onderstepoort Veterinary Institute, Onderstepoort 0110, South Africa. KoekemoerO@arc.agric.za
Dijk, A A van

    MeSH Terms

    • African Horse Sickness / diagnosis
    • African Horse Sickness / virology
    • African Horse Sickness Virus / classification
    • African Horse Sickness Virus / genetics
    • African Horse Sickness Virus / immunology
    • African Horse Sickness Virus / isolation & purification
    • Animals
    • DNA, Complementary
    • DNA, Viral / genetics
    • DNA, Viral / metabolism
    • Genome, Viral
    • Horses / virology
    • Lung / virology
    • Nucleic Acid Hybridization
    • RNA, Viral / genetics
    • RNA, Viral / metabolism
    • Reverse Transcriptase Polymerase Chain Reaction
    • Sensitivity and Specificity
    • Serotyping
    • Spleen / virology

    Citations

    This article has been cited 3 times.
    1. Bachanek-Bankowska K, Maan S, Castillo-Olivares J, Manning NM, Maan NS, Potgieter AC, Di Nardo A, Sutton G, Batten C, Mertens PP. Real time RT-PCR assays for detection and typing of African horse sickness virus. PLoS One 2014;9(4):e93758.
      doi: 10.1371/journal.pone.0093758pubmed: 24721971google scholar: lookup
    2. Maan NS, Maan S, Nomikou K, Belaganahalli MN, Bachanek-Bankowska K, Mertens PP. Serotype specific primers and gel-based RT-PCR assays for 'typing' African horse sickness virus: identification of strains from Africa. PLoS One 2011;6(10):e25686.
      doi: 10.1371/journal.pone.0025686pubmed: 22028787google scholar: lookup
    3. Villalba R, Tena-Tomás C, Ruano MJ, Valero-Lorenzo M, López-Herranz A, Cano-Gómez C, Agüero M. Development and Validation of Three Triplex Real-Time RT-PCR Assays for Typing African Horse Sickness Virus: Utility for Disease Control and Other Laboratory Applications. Viruses 2024 Mar 20;16(3).
      doi: 10.3390/v16030470pubmed: 38543834google scholar: lookup