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PloS one2013; 8(10); e77599; doi: 10.1371/journal.pone.0077599

An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction.

Abstract: Laminitis is a chronic, crippling disease triggered by the sudden influx of dietary starch. Starch reaches the hindgut resulting in enrichment of lactic acid bacteria, lactate accumulation, and acidification of the gut contents. Bacterial products enter the bloodstream and precipitate systemic inflammation. Hindgut lactate levels are normally low because specific bacterial groups convert lactate to short chain fatty acids. Why this mechanism fails when lactate levels rapidly rise, and why some hindgut communities can recover is unknown. Fecal samples from three adult horses eating identical diets provided bacterial communities for this in vitro study. Triplicate microcosms of fecal slurries were enriched with lactate and/or starch. Metabolic products (short chain fatty acids, headspace gases, and hydrogen sulfide) were measured and microbial community compositions determined using Illumina 16S rRNA sequencing over 12-hour intervals. We report that patterns of change in short chain fatty acid levels and pH in our in vitro system are similar to those seen in in vivo laminitis induction models. Community differences between microcosms with disparate abilities to clear excess lactate suggest profiles conferring resistance of starch-induction conditions. Where lactate levels recover following starch induction conditions, propionate and acetate levels rise correspondingly and taxa related to Megasphaeraelsdenii reach levels exceeding 70% relative abundance. In lactate and control cultures, taxa related to Veillonellamontpellierensis are enriched as lactate levels fall. Understanding these community differences and factors promoting the growth of specific lactate utilizing taxa may be useful to prevent acidosis under starch-induction conditions.
Publication Date: 2013-10-01 PubMed ID: 24098591PubMed Central: PMC3788102DOI: 10.1371/journal.pone.0077599Google Scholar: Lookup
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  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

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This study explores the bacteria in horse gut that react differently to sudden starch intake, a cause for the crippling disease, laminitis. Using fecal samples from horses eating identical diets, the research observes how certain bacterial communities respond to starch and/or lactate enrichments and identifies the bacterial profiles that could be resistant to such conditions.

Exploring the Horse Gut Microbiome

  • Laminitis in horses is a severe disease caused by the sudden intake of dietary starch. The starch reaches the hindgut, promoting the growth of lactic acid bacteria, leading to the accumulation of lactate and gut acidification. The bacterial products then enter the bloodstream causing systemic inflammation.
  • Usually, specific bacterial groups convert lactate to short chain fatty acids, keeping the lactate levels low in the hindgut. This study aimed to understand why this conversion fails to occur when there is a rapid rise in lactate levels, and why certain gut communities restore faster than others.

Research Methodology

  • Fecal samples from three adult horses consuming similar diets were used in this study. These samples provided the bacterial communities required for this in vitro research.
  • Fecal slurries were prepared and enriched with lactate and/or starch in triplicate microcosms. Following this, the metabolic by-products (short chain fatty acids, headspace gases, and hydrogen sulfide) were measured, and the microbial community compositions were determined by using Illumina 16S rRNA sequencing. These measurements were taken at 12-hour intervals.

Key Findings

  • It was observed that the patterns of change in short chain fatty acid levels and souring in the in vitro system were similar to those seen in the in vivo laminitis induction models.
  • Where lactate levels recover following starch induction conditions, propionate and acetate levels rise correspondingly and taxa related to Megasphaeraelsdenii dominate, reaching over 70% relative abundance.
  • In control and lactate cultures, when lactate levels fall, taxa related to Veillonellamontpellierensis are enriched.
  • These community differences and factors promoting the growth of specific lactate utilizing taxa could be important in preventing acidosis under conditions of starch induction.

Cite This Article

APA
Biddle AS, Black SJ, Blanchard JL. (2013). An in vitro model of the horse gut microbiome enables identification of lactate-utilizing bacteria that differentially respond to starch induction. PLoS One, 8(10), e77599. https://doi.org/10.1371/journal.pone.0077599

Publication

ISSN: 1932-6203
NlmUniqueID: 101285081
Country: United States
Language: English
Volume: 8
Issue: 10
Pages: e77599
PII: e77599

Researcher Affiliations

Biddle, Amy S
  • Department of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America.
Black, Samuel J
    Blanchard, Jeffrey L

      MeSH Terms

      • Acetic Acid / metabolism
      • Acidosis, Lactic / microbiology
      • Animal Feed
      • Animals
      • Bacterial Load
      • Cecum / metabolism
      • Cecum / microbiology
      • Colon / metabolism
      • Colon / microbiology
      • Feces / microbiology
      • Horses
      • Hydrogen-Ion Concentration
      • Lactic Acid / metabolism
      • Megasphaera / isolation & purification
      • Megasphaera / metabolism
      • Microbiota / physiology
      • Models, Biological
      • Propionates / metabolism
      • RNA, Ribosomal, 16S / analysis
      • RNA, Ribosomal, 16S / genetics
      • Starch / metabolism
      • Veillonella / isolation & purification
      • Veillonella / metabolism

      Conflict of Interest Statement

      The authors have declared that no competing interests exist.

      References

      This article includes 52 references
      1. Janis C. THE EVOLUTIONARY STRATEGY OF THE EQUIDAE AND THE ORIGINS OF RUMEN AND CECAL DIGESTION.. Evolution 1976 Dec;30(4):757-774.
      2. Argenzio RA. Functions of the equine large intestine and their interrelationship in disease.. Cornell Vet 1975 Jul;65(3):303-30.
        pubmed: 237739
      3. Argenzio RA, Hintz HF. Effect of diet on glucose entry and oxidation rates in ponies.. J Nutr 1972 Jul;102(7):879-92.
        pubmed: 4556122doi: 10.1093/jn/102.7.879google scholar: lookup
      4. Argenzio RA, Southworth M, Stevens CE. Sites of organic acid production and absorption in the equine gastrointestinal tract.. Am J Physiol 1974 May;226(5):1043-50.
      5. Garner HE, Coffman JR, Hahn AW, Hutcheson DP, Tumbleson ME. Equine laminitis of alimentary origin: an experimental model.. Am J Vet Res 1975 Apr;36(4 Pt.1):441-4.
        pubmed: 1124880
      6. Al Jassim RA, Andrews FM. The bacterial community of the horse gastrointestinal tract and its relation to fermentative acidosis, laminitis, colic, and stomach ulcers.. Vet Clin North Am Equine Pract 2009 Aug;25(2):199-215.
        doi: 10.1016/j.cveq.2009.04.005pubmed: 19580934google scholar: lookup
      7. Milinovich GJ, Trott DJ, Burrell PC, van Eps AW, Thoefner MB, Blackall LL, Al Jassim RA, Morton JM, Pollitt CC. Changes in equine hindgut bacterial populations during oligofructose-induced laminitis.. Environ Microbiol 2006 May;8(5):885-98.
      8. Crawford C, Sepulveda MF, Elliott J, Harris PA, Bailey SR. Dietary fructan carbohydrate increases amine production in the equine large intestine: implications for pasture-associated laminitis.. J Anim Sci 2007 Nov;85(11):2949-58.
        doi: 10.2527/jas.2006-600pubmed: 17591708google scholar: lookup
      9. Garner HE, Moore JN, Johnson JH, Clark L, Amend JF, Tritschler LG, Coffmann JR, Sprouse RF, Hutcheson DP, Salem CA. Changes in the caecal flora associated with the onset of laminitis.. Equine Vet J 1978 Oct;10(4):249-52.
      10. nDe Fombelle A, Julliand V, Drogoul C, Jacotot E. Feeding and microbial disprders in horses: 1-Effects of an abrupt incorporation of two levels of barley in a hay diet on microbial profile and activities.. J Equine Vet Scin 21: 439–445.
      11. Gonçalves S, Julliand V, Leblond A. Risk factors associated with colic in horses.. Vet Res 2002 Nov-Dec;33(6):641-52.
        doi: 10.1051/vetres:2002044pubmed: 12498565google scholar: lookup
      12. Lameness and Laminitis in U.S. Horses (2005). Usdaaphisvs Ceah 4: 250.
      13. Garner HE, Moore JN, Johnson JH, Clark L, Amend JF, Tritschler LG, Coffmann JR, Sprouse RF, Hutcheson DP, Salem CA. Changes in the caecal flora associated with the onset of laminitis.. Equine Vet J 1978 Oct;10(4):249-52.
      14. Bailey SR, Baillon ML, Rycroft AN, Harris PA, Elliott J. Identification of equine cecal bacteria producing amines in an in vitro model of carbohydrate overload.. Appl Environ Microbiol 2003 Apr;69(4):2087-93.
      15. Bailey SR, Adair HS, Reinemeyer CR, Morgan SJ, Brooks AC, Longhofer SL, Elliott J. Plasma concentrations of endotoxin and platelet activation in the developmental stage of oligofructose-induced laminitis.. Vet Immunol Immunopathol 2009 Jun 15;129(3-4):167-73.
        doi: 10.1016/j.vetimm.2008.11.009pubmed: 19091426google scholar: lookup
      16. Mackie RI, Wilkins CA. Enumeration of anaerobic bacterial microflora of the equine gastrointestinal tract.. Appl Environ Microbiol 1988 Sep;54(9):2155-60.
      17. nDaly K, Stewart CS, Flint HJ, Shirazi-Beechey SP. Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes.. FEMS Microbiol Ecoln 38: 141–151.
      18. Shepherd ML, Swecker WS Jr, Jensen RV, Ponder MA. Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons.. FEMS Microbiol Lett 2012 Jan;326(1):62-8.
      19. Willing B, Vörös A, Roos S, Jones C, Jansson A, Lindberg JE. Changes in faecal bacteria associated with concentrate and forage-only diets fed to horses in training.. Equine Vet J 2009 Dec;41(9):908-14.
        doi: 10.2746/042516409X447806pubmed: 20383990google scholar: lookup
      20. Kern DL, Slyter LL, Leffel EC, Weaver JM, Oltjen RR. Ponies vs. steers: microbial and chemical characteristics of intestinal ingesta.. J Anim Sci 1974 Mar;38(3):559-64.
        pubmed: 4856481doi: 10.2527/jas1974.383559xgoogle scholar: lookup
      21. De Fombelle A, Julliand V, Drogoul C, Jacotot E. Characterization of the microbial and biochemical profile of the different segments of the digestive tract in horses given two distinct diets.. Acta Agric Scand Secion Anim Sci 77: 293–304.
      22. van Eps AW, Pollitt CC. Equine laminitis induced with oligofructose.. Equine Vet J 2006 May;38(3):203-8.
        pubmed: 16706272doi: 10.2746/042516406776866327google scholar: lookup
      23. Milinovich GJ, Burrell PC, Pollitt CC, Klieve AV, Blackall LL, Ouwerkerk D, Woodland E, Trott DJ. Microbial ecology of the equine hindgut during oligofructose-induced laminitis.. ISME J 2008 Nov;2(11):1089-100.
        doi: 10.1038/ismej.2008.67pubmed: 18580970google scholar: lookup
      24. Daly K, Proudman CJ, Duncan SH, Flint HJ, Dyer J, Shirazi-Beechey SP. Alterations in microbiota and fermentation products in equine large intestine in response to dietary variation and intestinal disease.. Br J Nutr 2012 Apr;107(7):989-95.
        doi: 10.1017/S0007114511003825pubmed: 21816118google scholar: lookup
      25. Poyart C, Quesne G, Trieu-Cuot P. Taxonomic dissection of the Streptococcus bovis group by analysis of manganese-dependent superoxide dismutase gene (sodA) sequences: reclassification of 'Streptococcus infantarius subsp. coli' as Streptococcus lutetiensis sp. nov. and of Streptococcus bovis biotype 11.2 as Streptococcus pasteurianus sp. nov.. Int J Syst Evol Microbiol 2002 Jul;52(Pt 4):1247-1255.
        doi: 10.1099/ijs.0.02044-0pubmed: 12148636google scholar: lookup
      26. Respondek F, Goachet AG, Julliand V. Effects of dietary short-chain fructooligosaccharides on the intestinal microflora of horses subjected to a sudden change in diet.. J Anim Sci 2008 Feb;86(2):316-23.
        doi: 10.2527/jas.2006-782pubmed: 17940163google scholar: lookup
      27. Al Jassim RAM, Scott PT, Krause D, Denman S, McSweeney CS. The diversity of cellulolytic and lactic acid bacteria of the gastro-intestinal tract of the horse.. Recent Adv Anim Nutr. Aust 15: 155–163.
      28. Milinovich GJ, Trott DJ, Burrell PC, Croser EL, Al Jassim RA, Morton JM, van Eps AW, Pollitt CC. Fluorescence in situ hybridization analysis of hindgut bacteria associated with the development of equine laminitis.. Environ Microbiol 2007 Aug;9(8):2090-100.
      29. Al Jassim RA, Scott PT, Trebbin AL, Trott D, Pollitt CC. The genetic diversity of lactic acid producing bacteria in the equine gastrointestinal tract.. FEMS Microbiol Lett 2005 Jul 1;248(1):75-81.
        doi: 10.1016/j.femsle.2005.05.023pubmed: 15953698google scholar: lookup
      30. nBryant MP, Burkey LA. Culture methods and some characteristics of some of the more numerous groups of bacteria in the bovine rumen.. J Dairy Scin 36: 205–217.
      31. nde Carvalho IPC, Detmann E, Mantovani HC, Paulino MF, de Campos Valadares Filho S. Growth and antimicrobial activity of lactic acid bacteria from rumen fluid according to energy or nitrogen source.. Rev Bras Zootecn 40: 1260–1265.
      32. nCline JD. Spectrophotometric determination of hydrogen sulfide in natural waters.. Limnol Oceann 14: 454–458.
        doi: 10.4319/lo.1969.14.3.0454google scholar: lookup
      33. Griffiths RI, Whiteley AS, O'Donnell AG, Bailey MJ. Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition.. Appl Environ Microbiol 2000 Dec;66(12):5488-91.
      34. DeAngelis KM, Silver WL, Thompson AW, Firestone MK. Microbial communities acclimate to recurring changes in soil redox potential status.. Environ Microbiol 2010 Dec;12(12):3137-49.
      35. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.. ISME J 2012 Aug;6(8):1621-4.
        pmc: PMC3400413pubmed: 22402401doi: 10.1038/ismej.2012.8google scholar: lookup
      36. Andrews S. FastQC.. Cambridge, UK: Babraham Institute.
      37. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data.. Nat Methods 2010 May;7(5):335-6.
        doi: 10.1038/nmeth.f.303pmc: PMC3156573pubmed: 20383131google scholar: lookup
      38. Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. PyNAST: a flexible tool for aligning sequences to a template alignment.. Bioinformatics 2010 Jan 15;26(2):266-7.
      39. Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methé B, DeSantis TZ, Petrosino JF, Knight R, Birren BW. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.. Genome Res 2011 Mar;21(3):494-504.
        doi: 10.1101/gr.112730.110pmc: PMC3044863pubmed: 21212162google scholar: lookup
      40. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.. Appl Environ Microbiol 2006 Jul;72(7):5069-72.
        doi: 10.1128/AEM.03006-05pmc: PMC1489311pubmed: 16820507google scholar: lookup
      41. nKolenbrander P. The Genus Veillonella.. The Prokaryotes New York, NY: Springer Verlag; US. pp. 1022–1040.
        doi: 10.1007/0-387-30744-3_36google scholar: lookup
      42. nHaikara A, Helander I. Pectinatus, Megasphaera and Zymophilus.. The Prokaryotes New York, NY: Springer; US. pp. 965–981.
        doi: 10.1007/0-387-30744-3_32google scholar: lookup
      43. Marounek M, Bartos S. Interactions between rumen amylolytic and lactate-utilizing bacteria in growth on starch.. J Appl Bacteriol 1987 Sep;63(3):233-8.
      44. nMackie RI, Gilchrist FMC, Heath S. An in vivo study of ruminal micro-organisms influencing lactate turnover and its contribution to volatile fatty acid production.. J Agric Scin 103: 37–51.
        doi: 10.1017/S0021859600043306google scholar: lookup
      45. Kumar PS, Brooker MR, Dowd SE, Camerlengo T. Target region selection is a critical determinant of community fingerprints generated by 16S pyrosequencing.. PLoS One 2011;6(6):e20956.
      46. Chakravorty S, Helb D, Burday M, Connell N, Alland D. A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria.. J Microbiol Methods 2007 May;69(2):330-9.
        doi: 10.1016/j.mimet.2007.02.005pmc: PMC2562909pubmed: 17391789google scholar: lookup
      47. Clarridge JE 3rd. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases.. Clin Microbiol Rev 2004 Oct;17(4):840-62, table of contents.
      48. Schlegel L, Grimont F, Ageron E, Grimont PAD, Bouvet A. Reappraisal of the taxonomy of the Streptococcus bovis/Streptococcus equinus complex and related species: description of Streptococcus gallolyticus subsp. gallolyticus subsp. nov., S. gallolyticus subsp. macedonicus subsp. nov. and S. gallolyticus subsp. pasteurianus subsp. nov.. Int J Syst Evol Microbiol 2003 May;53(Pt 3):631-645.
        doi: 10.1099/ijs.0.02361-0pubmed: 12807180google scholar: lookup
      49. Mackie RI, Heath S. Enumeration and isolation of lactate-utilizing bacteria from the rumen of sheep.. Appl Environ Microbiol 1979 Sep;38(3):416-21.
      50. Robinson JA, Smolenski WJ, Greening RC, Ogilvie ML, Bell RL. Prevention of acute acidosis and enhancement of feed intake in the bovine by Megasphaera elsdenii 407A.. J Anim Sci 70: 310.
      51. Kung L Jr, Hession AO. Preventing in vitro lactate accumulation in ruminal fermentations by inoculation with Megasphaera elsdenii.. J Anim Sci 1995 Jan;73(1):250-6.
        pubmed: 7601741doi: 10.2527/1995.731250xgoogle scholar: lookup
      52. Aikman PC, Henning PH, Humphries DJ, Horn CH. Rumen pH and fermentation characteristics in dairy cows supplemented with Megasphaera elsdenii NCIMB 41125 in early lactation.. J Dairy Sci 2011 Jun;94(6):2840-9.
        doi: 10.3168/jds.2010-3783pubmed: 21605754google scholar: lookup

      Citations

      This article has been cited 43 times.