Comparison of the broncoalveolar lavage fluid proteomics between foals and adult horses.
Abstract: Neonates have different cellular composition in their bronchoalveolar lavage fluid (BALF) when compared to foals and adult horses; however, little is known about the non-cellular components of BALF. The objective of this study was to determine the proteomic composition of BALF in neonatal horses and to compare it to that of foals and adult horses. Bronchoalveolar lavage fluid samples of seven neonates (< 1 week age), four 5 to 7-week-old foals, and six adult horses were collected. Quantitative proteomics of the fluid was performed using tandem mass tag labeling followed by high resolution liquid chromatography tandem mass spectrometry and protein relative abundances were compared between groups using exact text. A total of 704 proteins were identified with gene ontology terms and were classified. Of these, 332 proteins were related to the immune system in neonates, foals, and adult horses. The most frequent molecular functions identified were binding and catalytic activity and the most common biological processes were cellular process, metabolic process, and biological regulation. There was a significant difference in the proteome of neonates when compared to foals and to adult horses. Neonates had less relative expression (FDR < 0.01) of many immune-related proteins, including immunoglobulins, proteins involved in the complement cascade, ferritin, BPI fold-containing family B member 1, and macrophage receptor MARCO. This is the first report of equine neonate BALF proteomics and reveals differential abundance of proteins when compared to BALF from adult horses. The lower relative abundance of immune-related proteins in neonates could contribute to their susceptibility to pulmonary infections.
Copyright: © 2023 Rivolta et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Publication Date: 2023-09-05 PubMed ID: 37669266PubMed Central: PMC10479908DOI: 10.1371/journal.pone.0290778Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Journal Article
- Research Support
- Non-U.S. Gov't
- Research Support
- N.I.H.
- Extramural
Summary
This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.
The research article is about a comparative study of the proteomic content of bronchoalveolar lavage fluid (BALF) between neonate horses, foals and adult horses. Significant differences in the proteomic composition were found between the groups with lower levels of immune-related proteins in neonates.
Objective of the Research
- The main goal of this research was to determine the proteomic composition of BALF in newborn horses and compare it with foals (5 to 7-week-old) and adult horses.
- This is driven by the recognition that while there are established differences in the cellular composition of BALF between different age groups, the non-cellular components, such as proteins, are not well understood.
Methodology
- The researchers collected BALF samples from seven neonates (< 1 week old), four foals and six adult horses.
- The proteomics of the fluid were quantified using tandem mass tag labeling, liquid chromatography tandem mass spectrometry, and relative abundances of proteins were compared using the exact test method.
Findings and Interpretation
- The analysis identified 704 proteins, which were classified according to their gene ontology terms. Among these, 332 proteins were related to the immune system.
- The predominant molecular functions identified were binding and catalytic activity and the most recurrent biological processes were cellular process, metabolic process, and biological regulation.
- It was observed that the proteome of neonates was significantly different from that of both foals and adult horses. Notably, neonates expressed many immune-related proteins such as immunoglobulins, proteins involved in the complement cascade, ferritin, BPI fold-containing family B member 1, and macrophage receptor MARCO at a much lower level compared to the foals and adult horses.
Significance and Implications
- This study is the first to report on equine neonate BALF proteomics and reveals a significant difference in protein abundance compared to BALF from adult horses.
- The research is meaningful as it points out that the lower relative abundance of immune-related proteins in neonates could contribute to their susceptibility to pulmonary infections. This could inform targeted interventions in healthcare and management of neonate horses.
Cite This Article
APA
Rivolta AA, Bujold AR, Wilmarth PA, Phinney BS, Navelski JP, Horohov DW, Sanz MG.
(2023).
Comparison of the broncoalveolar lavage fluid proteomics between foals and adult horses.
PLoS One, 18(9), e0290778.
https://doi.org/10.1371/journal.pone.0290778 Publication
Researcher Affiliations
- Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America.
- Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America.
- Department of Pathobiology, University of Guelph, Guelph, Ontario, Canada.
- Proteomic Shared Resource, Oregon Health & Science University, Portland, Oregon, United States of America.
- Genome Center Proteomics Core Facility, UC Davis, Davis, California, United States of America.
- School of Economic Sciences, Washington State University, Pullman, Washington, United States of America.
- Gluck Equine Research Center, University of Kentucky, Lexington, Kentucky, United States of America.
- Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, Pullman, Washington, United States of America.
MeSH Terms
- Horses
- Animals
- Proteomics
- Therapeutic Irrigation
- Body Fluids
- Bronchoalveolar Lavage Fluid
- Chromatography, Liquid
Grant Funding
- P30 EY010572 / NEI NIH HHS
- P30 CA069533 / NCI NIH HHS
Conflict of Interest Statement
The authors have declared that no competing interests exist.
References
This article includes 69 references
- Giguère S, Polkes AC. Immunologic disorders in neonatal foals.. Vet Clin North Am Equine Pract 2005 Aug;21(2):241-72, v.
- Berghaus LJ, Giguère S, Sturgill TL. Effects of age and macrophage lineage on intracellular survival and cytokine induction after infection with Rhodococcus equi.. Vet Immunol Immunopathol 2014 Jul 15;160(1-2):41-50.
- Sanz M, Loynachan A, Sun L, Oliveira A, Breheny P, Horohov DW. The effect of bacterial dose and foal age at challenge on Rhodococcus equi infection.. Vet Microbiol 2013 Dec 27;167(3-4):623-31.
- Horowitz ML, Cohen ND, Takai S, Becu T, Chaffin MK, Chu KK, Magdesian KG, Martens RJ. Application of Sartwell's model (lognormal distribution of incubation periods) to age at onset and age at death of foals with Rhodococcus equi pneumonia as evidence of perinatal infection.. J Vet Intern Med 2001 May-Jun;15(3):171-5.
- Hines SA, Stone DM, Hines MT, Alperin DC, Knowles DP, Norton LK, Hamilton MJ, Davis WC, McGuire TC. Clearance of virulent but not avirulent Rhodococcus equi from the lungs of adult horses is associated with intracytoplasmic gamma interferon production by CD4+ and CD8+ T lymphocytes.. Clin Diagn Lab Immunol 2003 Mar;10(2):208-15.
- Bordin AI, Cohen ND, Giguère S, Bray JM, Berghaus LJ, Scott B, Johnson R, Hook M. Host-directed therapy in foals can enhance functional innate immunity and reduce severity of Rhodococcus equi pneumonia.. Sci Rep 2021 Jan 28;11(1):2483.
- Hostetter SJ, Clark SK, Gilbertie JM, Wiechert SA, Jones DE, Sponseller BA. Age-related variation in the cellular composition of equine bronchoalveolar lavage fluid.. Vet Clin Pathol 2017 Jun;46(2):344-353.
- Balson GA, Smith GD, Yager JA. Immunophenotypic analysis of foal bronchoalveolar lavage lymphocytes.. Vet Microbiol 1997 Jun 16;56(3-4):237-46.
- Bernoco M, Liu IK, Wuest-Ehlert CJ, Miller ME, Bowers J. Chemotactic and phagocytic function of peripheral blood polymorphonuclear leucocytes in newborn foals.. J Reprod Fertil Suppl 1987;35:599-605.
- Leclere M, Lavoie-Lamoureux A, Lavoie JP. Heaves, an asthma-like disease of horses.. Respirology 2011 Oct;16(7):1027-46.
- Breathnach CC, Sturgill-Wright T, Stiltner JL, Adams AA, Lunn DP, Horohov DW. Foals are interferon gamma-deficient at birth.. Vet Immunol Immunopathol 2006 Aug 15;112(3-4):199-209.
- Sellon DC. Secondary immunodeficiencies of horses.. Vet Clin North Am Equine Pract 2000 Apr;16(1):117-30.
- Rouse BT. The immunoglobulins of adult equine and foal sera: a quantitative study.. Br Vet J 1971 Jan;127(1):45-52.
- Sheoran AS, Timoney JF, Holmes MA, Karzenski SS, Crisman MV. Immunoglobulin isotypes in sera and nasal mucosal secretions and their neonatal transfer and distribution in horses.. Am J Vet Res 2000 Sep;61(9):1099-105.
- Wright JR. Immunoregulatory functions of surfactant proteins.. Nat Rev Immunol 2005 Jan;5(1):58-68.
- Christmann U, Livesey LC, Taintor JS, Waldridge BM, Schumacher J, Grier BL, Hite RD. Lung surfactant function and composition in neonatal foals and adult horses.. J Vet Intern Med 2006 Nov-Dec;20(6):1402-7.
- Bright LA, Mujahid N, Nanduri B, McCarthy FM, Costa LR, Burgess SC, Swiderski CE. Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences.. Anim Genet 2011 Aug;42(4):395-405.
- Feutz MM. Proteomic analysis of bronchoalveolar lavage fluid in an equine model of asthma during a natural antigen exposure trial. Journal of Integrated OMICS 2 (2)2012 p. 123–31.
- Sanz MG, Bradway DS, Horohov DW, Baszler TV. Rhodococcus equi-specific hyperimmune plasma administration decreases faecal shedding of pathogenic R. equi in foals.. Vet Rec 2019 Jul 6;185(1):19.
- Hoffman AM. Bronchoalveolar lavage: sampling technique and guidelines for cytologic preparation and interpretation.. Vet Clin North Am Equine Pract 2008 Aug;24(2):423-35, vii-viii.
- Plubell DL, Wilmarth PA, Zhao Y, Fenton AM, Minnier J, Reddy AP, Klimek J, Yang X, David LL, Pamir N. Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue.. Mol Cell Proteomics 2017 May;16(5):873-890.
- Tiwari S, Mishra M, Salemi MR, Phinney BS, Newens JL, Gomes AV. Gender-specific changes in energy metabolism and protein degradation as major pathways affected in livers of mice treated with ibuprofen.. Sci Rep 2020 Feb 25;10(1):3386.
- Eng JK, Jahan TA, Hoopmann MR. Comet: an open-source MS/MS sequence database search tool.. Proteomics 2013 Jan;13(1):22-4.
- H D Sagawa C, de A B Assis R, Zaini PA, Wilmarth PA, Phinney BS, Moreira LM, Dandekar AM. Proteome Analysis of Walnut Bacterial Blight Disease.. Int J Mol Sci 2020 Oct 9;21(20).
- Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.. Bioinformatics 2010 Jan 1;26(1):139-40.
- Robinson MD, Smyth GK. Moderated statistical tests for assessing differences in tag abundance.. Bioinformatics 2007 Nov 1;23(21):2881-7.
- Robinson MD, Smyth GK. Small-sample estimation of negative binomial dispersion, with applications to SAGE data.. Biostatistics 2008 Apr;9(2):321-32.
- Tesena P, Kingkaw A, Vongsangnak W, Pitikarn S, Phaonakrop N, Roytrakul S, Kovitvadhi A. Preliminary Study: Proteomic Profiling Uncovers Potential Proteins for Biomonitoring Equine Melanocytic Neoplasm.. Animals (Basel) 2021 Jun 27;11(7).
- Robinson MD, Oshlack A. A scaling normalization method for differential expression analysis of RNA-seq data.. Genome Biol 2010;11(3):R25.
- Aguilan JT, Kulej K, Sidoli S. Guide for protein fold change and p-value calculation for non-experts in proteomics.. Mol Omics 2020 Dec 1;16(6):573-582.
- Omenn GS, Lane L, Overall CM, Paik YK, Cristea IM, Corrales FJ, Lindskog C, Weintraub S, Roehrl MHA, Liu S, Bandeira N, Srivastava S, Chen YJ, Aebersold R, Moritz RL, Deutsch EW. Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project.. J Proteome Res 2021 Dec 3;20(12):5227-5240.
- Hood L, Campbell JH, Elgin SC. The organization, expression, and evolution of antibody genes and other multigene families.. Annu Rev Genet 1975;9:305-53.
- Anoshchenko O, Prasad B, Neradugomma NK, Wang J, Mao Q, Unadkat JD. Gestational Age-Dependent Abundance of Human Placental Transporters as Determined by Quantitative Targeted Proteomics.. Drug Metab Dispos 2020 Sep;48(9):735-741.
- Umstead TM, Freeman WM, Chinchilli VM, Phelps DS. Age-related changes in the expression and oxidation of bronchoalveolar lavage proteins in the rat.. Am J Physiol Lung Cell Mol Physiol 2009 Jan;296(1):L14-29.
- Hollung K, Grove H, Færgestad EM, Sidhu MS, Berg P. Comparison of muscle proteome profiles in pure breeds of Norwegian Landrace and Duroc at three different ages.. Meat Sci 2009 Mar;81(3):487-92.
- McGorum BC, Pirie RS, Eaton SL, Keen JA, Cumyn EM, Arnott DM, Chen W, Lamont DJ, Graham LC, Llavero Hurtado M, Pemberton A, Wishart TM. Proteomic Profiling of Cranial (Superior) Cervical Ganglia Reveals Beta-Amyloid and Ubiquitin Proteasome System Perturbations in an Equine Multiple System Neuropathy.. Mol Cell Proteomics 2015 Nov;14(11):3072-86.
- Dong Z, Haines S, Coates D. Proteomic Profiling of Stem Cell Tissues during Regeneration of Deer Antler: A Model of Mammalian Organ Regeneration.. J Proteome Res 2020 Apr 3;19(4):1760-1775.
- Franzén K, Eriksson G, Olsson F, Asker L, Lidén P, Cöster J. Protein names and how to find them.. Int J Med Inform 2002 Dec 4;67(1-3):49-61.
- Chen J, Ryu S, Gharib SA, Goodlett DR, Schnapp LM. Exploration of the normal human bronchoalveolar lavage fluid proteome.. Proteomics Clin Appl 2008 Apr;2(4):585-95.
- Guo Y, Ma SF, Grigoryev D, Van Eyk J, Garcia JG. 1-DE MS and 2-D LC-MS analysis of the mouse bronchoalveolar lavage proteome.. Proteomics 2005 Nov;5(17):4608-24.
- Bartlett JA, Albertolle ME, Wohlford-Lenane C, Pezzulo AA, Zabner J, Niles RK, Fisher SJ, McCray PB Jr, Williams KE. Protein composition of bronchoalveolar lavage fluid and airway surface liquid from newborn pigs.. Am J Physiol Lung Cell Mol Physiol 2013 Aug 1;305(3):L256-66.
- Bernoco MM, Liu IK, Willits NH. Hemolytic complement activity and concentrations of its third component during maturation of the immune response in colostrum-deprived foals.. Am J Vet Res 1994 Jul;55(7):928-33.
- Boyd NK, Cohen ND, Lim WS, Martens RJ, Chaffin MK, Ball JM. Temporal changes in cytokine expression of foals during the first month of life.. Vet Immunol Immunopathol 2003 Mar 20;92(1-2):75-85.
- Noris M, Remuzzi G. Overview of complement activation and regulation.. Semin Nephrol 2013 Nov;33(6):479-92.
- Folmar CN, Cywes-Bentley C, Bordin AI, Rocha JN, Bray JM, Kahn SK, Schuckert AE, Pier GB, Cohen ND. In vitro evaluation of complement deposition and opsonophagocytic killing of Rhodococcus equi mediated by poly-N-acetyl glucosamine hyperimmune plasma compared to commercial plasma products.. J Vet Intern Med 2019 May;33(3):1493-1499.
- Kraal G, van der Laan LJ, Elomaa O, Tryggvason K. The macrophage receptor MARCO.. Microbes Infect 2000 Mar;2(3):313-6.
- Kanno S, Hirano S, Sakamoto T, Furuyama A, Takase H, Kato H, Fukuta M, Aoki Y. Scavenger receptor MARCO contributes to cellular internalization of exosomes by dynamin-dependent endocytosis and macropinocytosis.. Sci Rep 2020 Dec 11;10(1):21795.
- Marra MN, Wilde CG, Griffith JE, Snable JL, Scott RW. Bactericidal/permeability-increasing protein has endotoxin-neutralizing activity.. J Immunol 1990 Jan 15;144(2):662-6.
- Xu Y, Tao Z, Jiang Y, Liu T, Xiang Y. Overexpression of BPIFB1 promotes apoptosis and inhibits proliferation via the MEK/ERK signal pathway in nasopharyngeal carcinoma.. Int J Clin Exp Pathol 2019;12(1):356-364.
- Theil EC. Ferritin: structure, gene regulation, and cellular function in animals, plants, and microorganisms.. Annu Rev Biochem 1987;56:289-315.
- Kawamata R, Yokoyama K, Sato M, Goto M, Nozaki Y, Takagi T, Kumagai H, Yamagata T. Utility of serum ferritin and lactate dehydrogenase as surrogate markers for steroid therapy for Mycoplasma pneumoniae pneumonia.. J Infect Chemother 2015 Nov;21(11):783-9.
- Guan WJ, Ni ZY, Hu Y, Liang WH, Ou CQ, He JX, Liu L, Shan H, Lei CL, Hui DSC, Du B, Li LJ, Zeng G, Yuen KY, Chen RC, Tang CL, Wang T, Chen PY, Xiang J, Li SY, Wang JL, Liang ZJ, Peng YX, Wei L, Liu Y, Hu YH, Peng P, Wang JM, Liu JY, Chen Z, Li G, Zheng ZJ, Qiu SQ, Luo J, Ye CJ, Zhu SY, Zhong NS. Clinical Characteristics of Coronavirus Disease 2019 in China.. N Engl J Med 2020 Apr 30;382(18):1708-1720.
- Dondi F, Lukacs RM, Gentilini F, Rinnovati R, Spadari A, Romagnoli N. Serum amyloid A, haptoglobin, and ferritin in horses with colic: Association with common clinicopathological variables and short-term outcome.. Vet J 2015 Jul;205(1):50-5.
- Knapp S, Florquin S, Golenbock DT, van der Poll T. Pulmonary lipopolysaccharide (LPS)-binding protein inhibits the LPS-induced lung inflammation in vivo.. J Immunol 2006 Mar 1;176(5):3189-95.
- Laoui D, Van Overmeire E, De Baetselier P, Van Ginderachter JA, Raes G. Functional Relationship between Tumor-Associated Macrophages and Macrophage Colony-Stimulating Factor as Contributors to Cancer Progression.. Front Immunol 2014;5:489.
- Kashyap B, Kullaa AM. Regulation of mucin 1 expression and its relationship with oral diseases.. Arch Oral Biol 2020 Sep;117:104791.
- Dhar P, Ng GZ, Dunne EM, Sutton P. Mucin 1 protects against severe Streptococcus pneumoniae infection.. Virulence 2017 Nov 17;8(8):1631-1642.
- Kato K, Lillehoj EP, Lu W, Kim KC. MUC1: The First Respiratory Mucin with an Anti-Inflammatory Function.. J Clin Med 2017 Nov 29;6(12).
- Ferraboschi P, Ciceri S, Grisenti P. Applications of Lysozyme, an Innate Immune Defense Factor, as an Alternative Antibiotic.. Antibiotics (Basel) 2021 Dec 14;10(12).
- Mackie IA, Seal DV. Quantitative tear lysozyme assay in units of activity per microlitre.. Br J Ophthalmol 1976 Jan;60(1):70-4.
- Ratjen F, Rehn B, Costabel U, Bruch J. Age-dependency of surfactant phospholipids and surfactant protein A in bronchoalveolar lavage fluid of children without bronchopulmonary disease.. Eur Respir J 1996 Feb;9(2):328-33.
- Wattiez R, Hermans C, Bernard A, Lesur O, Falmagne P. Human bronchoalveolar lavage fluid: two-dimensional gel electrophoresis, amino acid microsequencing and identification of major proteins.. Electrophoresis 1999 Jun;20(7):1634-45.
- Georgila K, Vyrla D, Drakos E. Apolipoprotein A-I (ApoA-I), Immunity, Inflammation and Cancer.. Cancers (Basel) 2019 Aug 1;11(8).
- Thompson A, Danesh J. Associations between apolipoprotein B, apolipoprotein AI, the apolipoprotein B/AI ratio and coronary heart disease: a literature-based meta-analysis of prospective studies.. J Intern Med 2006 May;259(5):481-92.
- Arevalo JA, Vázquez-Medina JP. The Role of Peroxiredoxin 6 in Cell Signaling.. Antioxidants (Basel) 2018 Nov 24;7(12).
- Song Y, Fukuda N, Bai C, Ma T, Matthay MA, Verkman AS. Role of aquaporins in alveolar fluid clearance in neonatal and adult lung, and in oedema formation following acute lung injury: studies in transgenic aquaporin null mice.. J Physiol 2000 Jun 15;525 Pt 3(Pt 3):771-9.
- Xie JJ, Zhang FR, Tao LH, Lü Z, Xu XE, Jian-Shen, Xu LY, Li EM. Expression of ezrin in human embryonic, fetal, and normal adult tissues.. J Histochem Cytochem 2011 Nov;59(11):1001-8.
- Halliwell RE, McGorum BC, Irving P, Dixon PM. Local and systemic antibody production in horses affected with chronic obstructive pulmonary disease.. Vet Immunol Immunopathol 1993 Oct;38(3-4):201-15.
- Perkins GA, Wagner B. The development of equine immunity: Current knowledge on immunology in the young horse.. Equine Vet J 2015 May;47(3):267-74.
Citations
This article has been cited 0 times.Use Nutrition Calculator
Check if your horse's diet meets their nutrition requirements with our easy-to-use tool Check your horse's diet with our easy-to-use tool
Talk to a Nutritionist
Discuss your horse's feeding plan with our experts over a free phone consultation Discuss your horse's diet over a phone consultation
Submit Diet Evaluation
Get a customized feeding plan for your horse formulated by our equine nutritionists Get a custom feeding plan formulated by our nutritionists