Diversity of mitochondrial D-loop haplotypes from ancient Thracian horses in Bulgaria.
Abstract: The domestication of the horse began possibly more than 5000 years ago in the western part of the Eurasian steppe, and according to the leading hypothesis, horses first spread from the Steppe toward the region of the Thracian culture, starting in the second half of the 2nd millennium BCE and flourished from the fifth to first centuries BCE, mainly located in present-day Bulgaria. We analyzed 17 horse bone remains excavated from Thracian archaeological sites (fourth to first centuries BCE) in Bulgaria and successfully identified 17 sequences representing 14 different haplotypes of the mitochondrial D-loop. Compared with the mtDNA haplotypes of modern horses around the world, ancient Thracian horses in Bulgaria are thought to be more closely related to modern horses of Southern Europe and less related to those of Central Asia. In addition, the haplotypes we obtained represented 11 previously reported modern horse mtDNA haplogroups: A, B, D, E, G, H, I, L, N, P, and Q. All the haplogroups contain modern and regionally predominant haplotypes occurring in Europe, the Middle East, and Central Asia. Our results indicate that Thracian horses in Bulgaria have had relatively high genetic diversity and are closely related to modern horse breeds.
© 2023 Japanese Society of Animal Science.
Publication Date: 2023-01-31 PubMed ID: 36717086DOI: 10.1111/asj.13810Google Scholar: Lookup
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Summary
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The research involves an analysis of the mitochondrial DNA of ancient Thracian horses in Bulgaria to explore their genetic diversity and relatedness to modern horse breeds.
Background
- The researchers focus on the Thracian culture, which thrived from the fifth to first centuries BCE, predominantly in present-day Bulgaria.
- The domestication of horses likely began more than 5000 years ago in the western part of the Eurasian steppe.
- The primary hypothesis suggests that horses first spread from this Steppe region towards Thracia around the second half of the second millennium BCE.
Methodology
- The team analysed bone remains from 17 horses uncovered at Thracian archaeological sites in Bulgaria, estimated to be from the fourth to first centuries BCE.
- Their analysis focused on the mitochondrial DNA (mtDNA) particularly the D-loop, a segment that controls the replication of mitochondria. This was chosen due to its high mutation frequency, which makes it effective for studying genetic diversity.
Findings
- Out of the 17 horse bone remains, the scientists were able to successfully identify 17 sequences representing 14 different D-loop haplotypes, or distinct DNA variations.
- These haplotypes were compared to those of modern horses from around the world, with ancient Thracian horses found to be closer genetically to horses from Southern Europe than those from Central Asia.
- The study also identified 11 haplogroups—large groups of related haplotypes—previously reported in modern horses including A, B, D, E, G, H, I, L, N, P, and Q. All these haplogroups contain the mtDNA of modern and typically predominant horse breeds in Europe, the Middle East, and Central Asia.
Conclusion
- The study concluded that the ancient Thracian horses in Bulgaria exhibited relatively high genetic diversity.
- Additionally, these horses were found to be closely related to certain modern horse breeds, highlighting an interesting genetic lineage.
Cite This Article
APA
Nishita Y, Amaike Y, Spassov N, Hristova L, Kostov D, Vladova D, Peeva S, Raichev E, Vlaeva R, Masuda R.
(2023).
Diversity of mitochondrial D-loop haplotypes from ancient Thracian horses in Bulgaria.
Anim Sci J, 94(1), e13810.
https://doi.org/10.1111/asj.13810 Publication
Researcher Affiliations
- Department of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Japan.
- Department of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Japan.
- National Museum of Natural History, Bulgarian Academy of Sciences, Sofia, Bulgaria.
- National Museum of Natural History, Bulgarian Academy of Sciences, Sofia, Bulgaria.
- Department of Veterinary Anatomy, Histology and Embryology, Faculty of Veterinary Medicine, Trakia University, Stara Zagora, Bulgaria.
- Department of Veterinary Anatomy, Histology and Embryology, Faculty of Veterinary Medicine, Trakia University, Stara Zagora, Bulgaria.
- Department of Animal Production, Faculty of Agricultural Science, Trakia University, Stara Zagora, Bulgaria.
- Department of Animal Production, Faculty of Agricultural Science, Trakia University, Stara Zagora, Bulgaria.
- Department of Animal Production, Faculty of Agricultural Science, Trakia University, Stara Zagora, Bulgaria.
- Department of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, Japan.
MeSH Terms
- Horses / genetics
- Animals
- Bulgaria
- Haplotypes / genetics
- Phylogeny
- Mitochondria / genetics
- DNA, Mitochondrial / genetics
- Genetic Variation
Grant Funding
- Joint Research Project Grant / Japan Society for the Promotion of Science
- The Thracians: Genesis and Development of the Ethn / Bulgarian Academy of Sciences
References
This article includes 29 references
- Achilli A, Olivieri A, Soares P, Lancioni H, Hooshiar Kashani B, Perego UA, Nergadze SG, Carossa V, Santagostino M, Capomaccio S, Felicetti M, Al-Achkar W, Penedo MC, Verini-Supplizi A, Houshmand M, Woodward SR, Semino O, Silvestrelli M, Giulotto E, Torroni A. Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication. Proceedings of the National Academy of Sciences of the United States of America 109, 2449-2454.
- Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology 215, 403-410.
- Cieslak M, Pruvost M, Benecke N, Hofreiter M, Morales A, Reissmann M, Ludwig A. Origin and history of mitochondrial DNA lineages in domestic horses. PLoS ONE 5, e15311.
- Clement M, Posada D, Crandall KA. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9, 1657-1659.
- Clement M, Snell Q, Walker P, Posada D, Crandall K. TCS: Estimating gene genealogies. Parallel and Distributed Processing Symposium. International Proceedings 2, 184.
- Dzhebir G, Yordanov G, Yankova I, Sirakova D, Petrava M, Neov B, Hristov P, Radoslavov G, Hristova L, Spassov N. Comparative genetic analysis of subfossil wild horses (from the Neolithic Age and Early Bronze Age) and present-day domestic horses from Bulgaria. Historia Naturalis Bulgarica 25, 3-10.
- Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, Barrett JH, Bayarsaikhan J, Benecke N, Bernáldez-Sánchez E, Orlando L. Tracking five millennia of horse management with extensive ancient genome time series. Cell 177, 1419-1435.
- Gaunitz C, Fages A, Hanghøj K, Albrechtsen A, Khan N, Schubert M, Seguin-Orlando A, Owens IJ, Felkel S, Bignon-Lau O, de Barros Damgaard P, Mittnik A, Mohaseb AF, Davoudi H, Alquraishi S, Alfarhan AH, Al-Rasheid KAS, Crubézy E, Benecke N, Orlando L. Ancient genomes revisit the ancestry of domestic and Przewalski's horses. Science 360, 111-114.
- Guimaraes S, Arbuckle BS, Peters J, Adcock SE, Buitenhuis H, Chazin H, Manaseryan N, Uerpmann HP, Grange T, Geigl EM. Ancient DNA shows domestic horses were introduced in the southern Caucasus and Anatolia during the Bronze Age. Science Advances 6, eabb0030.
- Hristov P, Yordanov G, Vladov V, Neov B, Plova N, Radoslavov G. Mitochondrial profiles of the east Bulgarian and the Pleven horse breeds. Journal of Equine Veterinary Science 88, 102933.
- Jansen T, Forster P, Levine MA, Oelke H, Hurles M, Renfrew C, Weber J, Olek K. Mitochondrial DNA and the origins of the domestic horse. Proceedings of the National Academy of Sciences of the United States of America 99, 10908-10910.
- Karaivanov R. Our ancestors' horses. Stara Zagora, Higher Institute of Zootechnics and Veterinary Medicine.
- Kavar T, Dovc P. Domestication of the horse: Genetic relationships between domestic and wild horses. Livestock Science 116, 1-14.
- Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35, 1547-1549.
- Leith JW, Bryant D. PopART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution 6, 1110-1116.
- Librado P, Khan N, Fages A, Kusliy MA, Suchan T, Tonasso-Calvière L, Schiavinato S, Alioglu D, Fromentier A, Perdereau A, Aury JM, Gaunitz C, Chauvey L, Seguin-Orlando A, Der Sarkissian C, Southon J, Shapiro B, Tishkin AA, Kovalev AA, Orlando L. The origins and spread of domestic horses from the Western Eurasian steppes. Nature 598, 634-640.
- Lira J, Linderholm A, Olaria C, Brandström Durling M, Gilbert MT, Ellegren H, Willerslev E, Lidén K, Arsuaga JL, Götherström A. Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses. Molecular Ecology 19, 64-78.
- Loulanski T, Loulanski V. Thracian mounds in Bulgaria: Heritage at risk. The Historic Environment Policy & Practice 8, 246-277.
- Masuda R, Amano T, Ono H. Ancient DNA analysis of brown bear (Ursus arctos) remains from the archaeological site of Rebun Island, Hokkaido, Japan. Zoological Science 18, 741-751.
- Perry GH, Makarewicz CA. Horse paleogenomes and human - Animal interactions in prehistory. Trends in Genetics 35, 437-475.
- Sambrook J, Fritsch EF, Maniatis T. Molecular cloning: A laboratory manual (2nd ed.). New York.
- Spassov N, Iliev N. The wild horses of East Europe and the polyphyletic origin of the domestic horse. Proc 7-ICAZ Congress. Anthropozoologica 25-26, 753-761.
- Spassov N, Iliev N. The late Pleistocene and Holocene horses of East Europe and the polyphyletic origin of the domestic horse. In M. Stefanovich, H. Todorova, & H. Hauptmann (Eds.). James H. Gaul in memoriam (pp. 371-390). Sofia.
- Spassov N, Iliev N, Hristova L, Ivanov V. Typology of Thracian horses according to osteological analysis of skeletal remains and depictions from the antiquity. Historia Naturalis Bulgarica 25, 15-24.
- Vilá C, Leonard JA, Götherström A, Marklund S, Sandberg K, Lidén K, Wayne RK, Ellegren H. Widespread origins of domestic horse lineages. Science 291, 474-477.
- Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SCA, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L. Mitochondrial phylogenomics of modern and ancient equids. PLoS ONE 8, e55950.
- Vorobieva NV, Makunin AI, Druzhkova AS, Kusliy MA, Trifonov VA, Popova KO, Polosmak NV, Molodin VI, Vasiliev SK, Shunkov MV, Graphodatsky A. High genetic diversity of ancient horses from the Ukok plateau. PLoS ONE 15, e0241997.
- Xu X, Árnason Ú. The complete mitochondrial DNA sequence of the horse, Equus caballus: Extensive heteroplasmy of the control region. Gene 148, 357-362.
- Yoon SH, Lee W, Ahn H, Caetano-Anolles K, Park KD, Kim H. Origin and spread of Thoroughbred racehorses inferred from complete mitochondrial genome sequences: Phylogenomic and Bayesian coalescent perspectives. PLoS ONE 13, e0203917.
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