Analyze Diet
PloS one2011; 6(3); e18194; doi: 10.1371/journal.pone.0018194

European domestic horses originated in two holocene refugia.

Abstract: The role of European wild horses in horse domestication is poorly understood. While the fossil record for wild horses in Europe prior to horse domestication is scarce, there have been suggestions that wild populations from various European regions might have contributed to the gene pool of domestic horses. To distinguish between regions where domestic populations are mainly descended from local wild stock and those where horses were largely imported, we investigated patterns of genetic diversity in 24 European horse breeds typed at 12 microsatellite loci. The distribution of high levels of genetic diversity in Europe coincides with the distribution of predominantly open landscapes prior to domestication, as suggested by simulation-based vegetation reconstructions, with breeds from Iberia and the Caspian Sea region having significantly higher genetic diversity than breeds from central Europe and the UK, which were largely forested at the time the first domestic horses appear there. Our results suggest that not only the Eastern steppes, but also the Iberian Peninsula provided refugia for wild horses in the Holocene, and that the genetic contribution of these wild populations to local domestic stock may have been considerable. In contrast, the consistently low levels of diversity in central Europe and the UK suggest that domestic horses in these regions largely derive from horses that were imported from the Eastern refugium, the Iberian refugium, or both.
Publication Date: 2011-03-30 PubMed ID: 21479181PubMed Central: PMC3068172DOI: 10.1371/journal.pone.0018194Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.

The research reveals that two major areas in Europe, the Iberian Peninsula and the Caspian Sea region, may have bred wild horses that significantly contributed to the gene pool of domestic horses. Based on genetic evidence, horses in central Europe and the UK are more likely to have descended from imported horses.

Investigating Role of European Wild Horses in Horse Domestication

The study aims to understand the role that European wild horses may have played in horse domestication. The fossil record for these wild horses is sparse, yet it is believed that they could have contributed greatly to the genes of the domesticated horse.

  • The researchers employed genetic analysis using 12 microsatellite loci, a type of DNA sequence, across 24 European horse breeds.
  • The intention of the study was to distinguish between regions where domestic horses descended from local wild stock and regions where horses were predominantly imported.

Findings: High Genetic Diversity Correlates with Open Landscapes

The analysis showed that high genetic diversity of horses in certain regions coincided with the widespread open landscapes that existed prior to domestication.

  • Higher levels of diversity were found in breeds from Iberia (modern Spain and Portugal) and the Caspian Sea region.
  • In contrast, central Europe and the UK, which were largely forested during the onset of horse domestication, showed lower genetic diversity in their horse populations.

Interpretation: Two Main Refugia for Wild Horses

This study suggests two main refugia or locations which served as safe havens for wild horse populations during the Holocene period (the current geological epoch).

  • These are the Eastern steppes (including the Caspian Sea region) and the Iberian Peninsula, which both showed significantly higher genetic diversity.
  • The higher genetic diversity implies that these areas may have been significant contributors to the gene pool of domesticated horses.
  • In contrast, regions like central Europe and the UK may have largely derived their horse populations from these refugia, as indicated by lower genetic diversity. This suggests that the horses in these regions were most likely imported.

Cite This Article

APA
Warmuth V, Eriksson A, Bower MA, Cañon J, Cothran G, Distl O, Glowatzki-Mullis ML, Hunt H, Luís C, do Mar Oom M, Yupanqui IT, Ząbek T, Manica A. (2011). European domestic horses originated in two holocene refugia. PLoS One, 6(3), e18194. https://doi.org/10.1371/journal.pone.0018194

Publication

ISSN: 1932-6203
NlmUniqueID: 101285081
Country: United States
Language: English
Volume: 6
Issue: 3
Pages: e18194
PII: e18194

Researcher Affiliations

Warmuth, Vera
  • Department of Zoology, University of Cambridge, Cambridge, United Kingdom. vmw23@cam.ac.uk
Eriksson, Anders
    Bower, Mim A
      Cañon, Javier
        Cothran, Gus
          Distl, Ottmar
            Glowatzki-Mullis, Marie-Louise
              Hunt, Harriet
                Luís, Cristina
                  do Mar Oom, Maria
                    Yupanqui, Isabel Tupac
                      Ząbek, Tomasz
                        Manica, Andrea

                          MeSH Terms

                          • Animals
                          • Biological Evolution
                          • Breeding
                          • Ecosystem
                          • Europe
                          • Gene Pool
                          • Genetic Variation
                          • Geography
                          • Horses / physiology
                          • Microsatellite Repeats / genetics
                          • Middle East
                          • Time Factors

                          Grant Funding

                          • BB/H005854/1 / Biotechnology and Biological Sciences Research Council
                          • BB/E527604/1 / Biotechnology and Biological Sciences Research Council

                          Conflict of Interest Statement

                          The authors have declared that no competing interests exist.

                          References

                          This article includes 52 references

                          Citations

                          This article has been cited 21 times.
                          1. Vincelette A. The Characteristics, Distribution, Function, and Origin of Alternative Lateral Horse Gaits.. Animals (Basel) 2023 Aug 8;13(16).
                            doi: 10.3390/ani13162557pubmed: 37627349google scholar: lookup
                          2. Leonardi M, Boschin F, Boscato P, Manica A. Following the niche: the differential impact of the last glacial maximum on four European ungulates.. Commun Biol 2022 Sep 29;5(1):1038.
                            doi: 10.1038/s42003-022-03993-7pubmed: 36175492google scholar: lookup
                          3. Wolfsberger WW, Ayala NM, Castro-Marquez SO, Irizarry-Negron VM, Potapchuk A, Shchubelka K, Potish L, Majeske AJ, Oliver LF, Lameiro AD, Martínez-Cruzado JC, Lindgren G, Oleksyk TK. Genetic diversity and selection in Puerto Rican horses.. Sci Rep 2022 Jan 11;12(1):515.
                            doi: 10.1038/s41598-021-04537-5pubmed: 35017609google scholar: lookup
                          4. Ning T, Ling Y, Hu S, Ardalan A, Li J, Mitra B, Chaudhuri TK, Guan W, Zhao Q, Ma Y, Savolainen P, Zhang Y. Local origin or external input: modern horse origin in East Asia.. BMC Evol Biol 2019 Nov 27;19(1):217.
                            doi: 10.1186/s12862-019-1532-ypubmed: 31775623google scholar: lookup
                          5. Couso-Pérez S, de Limia FB, Ares-Mazás E, Gómez-Couso H. First report of zoonotic Cryptosporidium parvum GP60 subtypes IIaA15G2R1 and IIaA16G3R1 in wild ponies from the northern Iberian Peninsula.. Parasitol Res 2020 Jan;119(1):249-254.
                            doi: 10.1007/s00436-019-06529-xpubmed: 31758296google scholar: lookup
                          6. Raudsepp T, Finno CJ, Bellone RR, Petersen JL. Ten years of the horse reference genome: insights into equine biology, domestication and population dynamics in the post-genome era.. Anim Genet 2019 Dec;50(6):569-597.
                            doi: 10.1111/age.12857pubmed: 31568563google scholar: lookup
                          7. Castaneda C, Juras R, Khanshour A, Randlaht I, Wallner B, Rigler D, Lindgren G, Raudsepp T, Cothran EG. Population Genetic Analysis of the Estonian Native Horse Suggests Diverse and Distinct Genetics, Ancient Origin and Contribution from Unique Patrilines.. Genes (Basel) 2019 Aug 20;10(8).
                            doi: 10.3390/genes10080629pubmed: 31434327google scholar: lookup
                          8. Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, Barrett JH, Bayarsaikhan J, Benecke N, Bernáldez-Sánchez E, Berrocal-Rangel L, Biglari F, Boessenkool S, Boldgiv B, Brem G, Brown D, Burger J, Crubézy E, Daugnora L, Davoudi H, de Barros Damgaard P, de Los Ángeles de Chorro Y de Villa-Ceballos M, Deschler-Erb S, Detry C, Dill N, do Mar Oom M, Dohr A, Ellingvåg S, Erdenebaatar D, Fathi H, Felkel S, Fernández-Rodríguez C, García-Viñas E, Germonpré M, Granado JD, Hallsson JH, Hemmer H, Hofreiter M, Kasparov A, Khasanov M, Khazaeli R, Kosintsev P, Kristiansen K, Kubatbek T, Kuderna L, Kuznetsov P, Laleh H, Leonard JA, Lhuillier J, Liesau von Lettow-Vorbeck C, Logvin A, Lõugas L, Ludwig A, Luis C, Arruda AM, Marques-Bonet T, Matoso Silva R, Merz V, Mijiddorj E, Miller BK, Monchalov O, Mohaseb FA, Morales A, Nieto-Espinet A, Nistelberger H, Onar V, Pálsdóttir AH, Pitulko V, Pitskhelauri K, Pruvost M, Rajic Sikanjic P, Rapan Papeša A, Roslyakova N, Sardari A, Sauer E, Schafberg R, Scheu A, Schibler J, Schlumbaum A, Serrand N, Serres-Armero A, Shapiro B, Sheikhi Seno S, Shevnina I, Shidrang S, Southon J, Star B, Sykes N, Taheri K, Taylor W, Teegen WR, Trbojević Vukičević T, Trixl S, Tumen D, Undrakhbold S, Usmanova E, Vahdati A, Valenzuela-Lamas S, Viegas C, Wallner B, Weinstock J, Zaibert V, Clavel B, Lepetz S, Mashkour M, Helgason A, Stefánsson K, Barrey E, Willerslev E, Outram AK, Librado P, Orlando L. Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.. Cell 2019 May 30;177(6):1419-1435.e31.
                            doi: 10.1016/j.cell.2019.03.049pubmed: 31056281google scholar: lookup
                          9. Cozzi MC, Strillacci MG, Valiati P, Rogliano E, Bagnato A, Longeri M. Genetic variability of Akhal-Teke horses bred in Italy.. PeerJ 2018;6:e4889.
                            doi: 10.7717/peerj.4889pubmed: 30202639google scholar: lookup
                          10. Leonardi M, Boschin F, Giampoudakis K, Beyer RM, Krapp M, Bendrey R, Sommer R, Boscato P, Manica A, Nogues-Bravo D, Orlando L. Late Quaternary horses in Eurasia in the face of climate and vegetation change.. Sci Adv 2018 Jul;4(7):eaar5589.
                            doi: 10.1126/sciadv.aar5589pubmed: 30050986google scholar: lookup
                          11. Baker KH, Gray HWI, Ramovs V, Mertzanidou D, Akın Pekşen Ç, Bilgin CC, Sykes N, Hoelzel AR. Strong population structure in a species manipulated by humans since the Neolithic: the European fallow deer (Dama dama dama).. Heredity (Edinb) 2017 Jul;119(1):16-26.
                            doi: 10.1038/hdy.2017.11pubmed: 28353685google scholar: lookup
                          12. Librado P, Fages A, Gaunitz C, Leonardi M, Wagner S, Khan N, Hanghøj K, Alquraishi SA, Alfarhan AH, Al-Rasheid KA, Der Sarkissian C, Schubert M, Orlando L. The Evolutionary Origin and Genetic Makeup of Domestic Horses.. Genetics 2016 Oct;204(2):423-434.
                            doi: 10.1534/genetics.116.194860pubmed: 27729493google scholar: lookup
                          13. Naundrup PJ, Svenning JC. A Geographic Assessment of the Global Scope for Rewilding with Wild-Living Horses (Equus ferus).. PLoS One 2015;10(7):e0132359.
                            doi: 10.1371/journal.pone.0132359pubmed: 26177104google scholar: lookup
                          14. Jun J, Cho YS, Hu H, Kim HM, Jho S, Gadhvi P, Park KM, Lim J, Paek WK, Han K, Manica A, Edwards JS, Bhak J. Whole genome sequence and analysis of the Marwari horse breed and its genetic origin.. BMC Genomics 2014;15 Suppl 9(Suppl 9):S4.
                            doi: 10.1186/1471-2164-15-S9-S4pubmed: 25521865google scholar: lookup
                          15. Ludwig A, Reissmann M, Benecke N, Bellone R, Sandoval-Castellanos E, Cieslak M, Fortes GG, Morales-Muñiz A, Hofreiter M, Pruvost M. Twenty-five thousand years of fluctuating selection on leopard complex spotting and congenital night blindness in horses.. Philos Trans R Soc Lond B Biol Sci 2015 Jan 19;370(1660):20130386.
                            doi: 10.1098/rstb.2013.0386pubmed: 25487337google scholar: lookup
                          16. Li LF, Wang HY, Zhang C, Wang XF, Shi FX, Chen WN, Ge XJ. Origins and domestication of cultivated banana inferred from chloroplast and nuclear genes.. PLoS One 2013;8(11):e80502.
                            doi: 10.1371/journal.pone.0080502pubmed: 24260405google scholar: lookup
                          17. Brandariz-Fontes C, Leonard JA, Vega-Pla JL, Backström N, Lindgren G, Lippold S, Rico C. Y-chromosome analysis in Retuertas horses.. PLoS One 2013;8(5):e64985.
                            doi: 10.1371/journal.pone.0064985pubmed: 23741439google scholar: lookup
                          18. Jimenez LM, Mendez S, Dunner S, Cañón J, Cortés O. Colombian Creole horse breeds: Same origin but different diversity.. Genet Mol Biol 2012 Dec;35(4):790-6.
                          19. Warmuth V, Eriksson A, Bower MA, Barker G, Barrett E, Hanks BK, Li S, Lomitashvili D, Ochir-Goryaeva M, Sizonov GV, Soyonov V, Manica A. Reconstructing the origin and spread of horse domestication in the Eurasian steppe.. Proc Natl Acad Sci U S A 2012 May 22;109(21):8202-6.
                            doi: 10.1073/pnas.1111122109pubmed: 22566639google scholar: lookup
                          20. Achilli A, Olivieri A, Soares P, Lancioni H, Hooshiar Kashani B, Perego UA, Nergadze SG, Carossa V, Santagostino M, Capomaccio S, Felicetti M, Al-Achkar W, Penedo MC, Verini-Supplizi A, Houshmand M, Woodward SR, Semino O, Silvestrelli M, Giulotto E, Pereira L, Bandelt HJ, Torroni A. Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication.. Proc Natl Acad Sci U S A 2012 Feb 14;109(7):2449-54.
                            doi: 10.1073/pnas.1111637109pubmed: 22308342google scholar: lookup
                          21. Garcia JT, Alda F, Terraube J, Mougeot F, Sternalski A, Bretagnolle V, Arroyo B. Demographic history, genetic structure and gene flow in a steppe-associated raptor species.. BMC Evol Biol 2011 Nov 17;11:333.
                            doi: 10.1186/1471-2148-11-333pubmed: 22093489google scholar: lookup