Analyze Diet

Karyotypic relationships in Asiatic asses (kulan and kiang) as defined using horse chromosome arm-specific and region-specific probes.

Abstract: Cross-species chromosome painting has been applied to most of the species making up the numerically small family Equidae. However, comparative mapping data were still lacking in Asiatic asses kulan (Equus hemionus kulan) and kiang (E. kiang). The set of horse arm-specific probes generated by laser microdissection was hybridized onto kulan (E. hemionus kulan) and kiang (E. kiang) chromosomes in order to establish a genome-wide chromosomal correspondence between these Asiatic asses and the horse. Moreover, region-specific probes were generated to determine fusion configuration and orientation of conserved syntenic blocks. The kulan karyotype (2n = 54) was ascertained to be almost identical to the previously investigated karyotype of onager E. h. onager (2n = 56). The only difference is in fusion/fission of chromosomes homologous to horse 2q/3q, which are involved in chromosome number polymorphism in many Equidae species. E. kiang karyotype differs from the karyotype of E. hemionus by two additional fusions 8q/15 and 7/25. Chromosomes equivalent to 2q and 3q are not fused in kiang individuals with 2n = 52. Several discrepancies in centromere positions among kulan, kiang and horse chromosomes have been described. Most of the chromosome fusions in Asiatic asses are of centromere-centromere type. Comparative chromosome painting in kiang completed the efforts to establish chromosomal homologies in all representatives of the family Equidae. Application of region-specific probes allows refinement comparative maps of Asiatic asses.
Publication Date: 2009-09-05 PubMed ID: 19731053DOI: 10.1007/s10577-009-9069-3Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
  • Comparative Study
  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.

This research investigated the genetic relationship between Asiatic asses species (kulan and kiang) and compared their karyotypes (chromosomal composition) with the horse’s, using cross-species chromosome painting and region-specific probes.

Background and Objectives

  • Researchers noted that cross-species chromosome painting, a technique wherein chromosomes from one species are labeled and used to visualize matching chromosomes in other species, had been utilized for many members of the Equidae family (horses and similar species) but comparable data about Asiatic asses kulan and kiang were not comprehensively mapped.
  • The objective was to determine the genetic correspondence between these species and horses, and to identify any fusion or differentiation patterns, helping to widen the understanding of gene-block conservation and evolution in this family.
  • Methodology

    • Chromosome arm-specific probes (identifying particular parts of chromosomes) obtained from horse cells were utilized onto kulan and kiang chromosomes to locate homologous (genetically corresponding) regions.
    • Region-specific probes were utilized to define the fusion configurations and orientations of conserved syntenic blocks, which are segments of DNA where genes are in the same order across species.
    • Findings

      • The karyotype (the number and visual appearance of the chromosomes) of kulan was found to be nearly identical to E. h. onager’s karyotype with the only difference being in the fusion/fission (merging/splitting) of chromosomes homologous to horse chromosomes 2q/3q, that tend to be involved in chromosome number variations in many Equidae species.
      • Comparatively, kiang’s karyotype showed additional fusions 8q/15 and 7/25, while chromosomes equivalent to horse 2q and 3q are not fused in kiang, a distinction from both kulan and E. hemionus.
      • The team discovered several instances of centromere positions (the place where sister chromatids are attached in a chromosome) differing among kulan, kiang, and horse chromosomes, implying dissimilarities in the manner chromosomes separate during cell division.
      • Conclusions and Implications

        • This study completed the chromosome painting process in all members of the Equidae family by successfully mapping the kiang’s chromosomes.
        • The team stressed that the use of region-specific probes helps refine comparative maps of the chromosomes of Asiatic asses which could further contribute to understanding genetic relationships and evolutionary histories within the Equidae family.

Cite This Article

APA
Musilova P, Kubickova S, Horin P, Vodicka R, Rubes J. (2009). Karyotypic relationships in Asiatic asses (kulan and kiang) as defined using horse chromosome arm-specific and region-specific probes. Chromosome Res, 17(6), 783-790. https://doi.org/10.1007/s10577-009-9069-3

Publication

ISSN: 1573-6849
NlmUniqueID: 9313452
Country: Netherlands
Language: English
Volume: 17
Issue: 6
Pages: 783-790

Researcher Affiliations

Musilova, Petra
  • Department of Genetics and Reproduction, Veterinary Research Institute, Brno, Czech Republic. musilova@vri.cz
Kubickova, Svatava
    Horin, Petr
      Vodicka, Roman
        Rubes, Jiri

          MeSH Terms

          • Animals
          • Chromosome Banding
          • Chromosome Mapping
          • Chromosome Painting
          • Chromosomes, Mammalian / genetics
          • Chromosomes, Mammalian / ultrastructure
          • DNA Probes / chemistry
          • Equidae / genetics
          • Horses / genetics
          • In Situ Hybridization, Fluorescence
          • Karyotyping
          • Metaphase
          • Species Specificity

          References

          This article includes 30 references
          1. Musilova P, Kubickova S, Zrnova E, Horin P, Vahala J, Rubes J. Karyotypic relationships among Equus grevyi, Equus burchelli and domestic horse defined using horse chromosome arm-specific probes.. Chromosome Res 2007;15(6):807-13.
            pubmed: 17874215doi: 10.1007/s10577-007-1164-8google scholar: lookup
          2. Meltzer PS, Guan XY, Burgess A, Trent JM. Rapid generation of region specific probes by chromosome microdissection and their application.. Nat Genet 1992 Apr;1(1):24-8.
            pubmed: 1301994doi: 10.1038/ng0492-24google scholar: lookup
          3. Telenius H, Pelmear AH, Tunnacliffe A, Carter NP, Behmel A, Ferguson-Smith MA, Nordenskjöld M, Pfragner R, Ponder BA. Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes.. Genes Chromosomes Cancer 1992 Apr;4(3):257-63.
            pubmed: 1382568doi: 10.1002/gcc.2870040311google scholar: lookup
          4. Avise JC, Robinson TJ. Hemiplasy: a new term in the lexicon of phylogenetics.. Syst Biol 2008 Jun;57(3):503-7.
            pubmed: 18570042doi: 10.1080/10635150802164587google scholar: lookup
          5. Raudsepp T, Christensen K, Chowdhar BP. Cytogenetics of donkey chromosomes: nomenclature proposal based on GTG-banded chromosomes and depiction of NORs and telomeric sites.. Chromosome Res 2000;8(8):659-70.
            pubmed: 11196129doi: 10.1023/a:1026707002538google scholar: lookup
          6. Trifonov VA, Stanyon R, Nesterenko AI, Fu B, Perelman PL, O'Brien PC, Stone G, Rubtsova NV, Houck ML, Robinson TJ, Ferguson-Smith MA, Dobigny G, Graphodatsky AS, Yang F. Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla.. Chromosome Res 2008;16(1):89-107.
            pubmed: 18293107doi: 10.1007/s10577-007-1201-7google scholar: lookup
          7. Ryder OA. Chromosomal polymorphism in Equus hemionus.. Cytogenet Cell Genet 1978;21(4):177-83.
            pubmed: 149653doi: 10.1159/000130895google scholar: lookup
          8. Seabright M. A rapid banding technique for human chromosomes.. Lancet 1971 Oct 30;2(7731):971-2.
            pubmed: 4107917doi: 10.1016/s0140-6736(71)90287-xgoogle scholar: lookup
          9. Raudsepp T, Lear TL, Chowdhary BP. Comparative mapping in equids: the asine X chromosome is rearranged compared to horse and Hartmann's mountain zebra.. Cytogenet Genome Res 2002;96(1-4):206-9.
            pubmed: 12438800doi: 10.1159/000063050google scholar: lookup
          10. Richard F, Messaoudi C, Lombard M, Dutrillaux B. Chromosome homologies between man and mountain zebra (Equus zebra hartmannae) and description of a new ancestral synteny involving sequences homologous to human chromosomes 4 and 8.. Cytogenet Cell Genet 2001;93(3-4):291-6.
            pubmed: 11528128doi: 10.1159/000057000google scholar: lookup
          11. Rubes J, Kubickova S, Pagacova E, Cernohorska H, Di Berardino D, Antoninova M, Vahala J, Robinson TJ. Phylogenomic study of spiral-horned antelope by cross-species chromosome painting.. Chromosome Res 2008;16(7):935-47.
            pubmed: 18704723doi: 10.1007/s10577-008-1250-6google scholar: lookup
          12. Nickerson E, Nelson DL. Molecular definition of pericentric inversion breakpoints occurring during the evolution of humans and chimpanzees.. Genomics 1998 Jun 15;50(3):368-72.
            pubmed: 9676431doi: 10.1006/geno.1998.5332google scholar: lookup
          13. Rubes J, Pagacova E, Kopecna O, Kubickova S, Cernohorska H, Vahala J, Di Berardino D. Karyotype, centric fusion polymorphism and chromosomal aberrations in captive-born mountain reedbuck (Redunca fulvorufula).. Cytogenet Genome Res 2007;116(4):263-8.
            pubmed: 17431324doi: 10.1159/000100410google scholar: lookup
          14. Ferguson-Smith MA, Trifonov V. Mammalian karyotype evolution.. Nat Rev Genet 2007 Dec;8(12):950-62.
            pubmed: 18007651doi: 10.1038/nrg2199google scholar: lookup
          15. Ryder OA, Epel NC, Benirschke K. Chromosome banding studies of the Equidae.. Cytogenet Cell Genet 1978;20(1-6):332-50.
            pubmed: 648186
          16. Robinson TJ, Ruiz-Herrera A, Avise JC. Hemiplasy and homoplasy in the karyotypic phylogenies of mammals.. Proc Natl Acad Sci U S A 2008 Sep 23;105(38):14477-81.
            pubmed: 18787123doi: 10.1073/pnas.0807433105google scholar: lookup
          17. Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E. Homologous fission event(s) implicated for chromosomal polymorphisms among five species in the genus Equus.. Cytogenet Genome Res 2003;102(1-4):217-21.
            pubmed: 14970706doi: 10.1159/000075752google scholar: lookup
          18. Yang F, Fu B, O'Brien PC, Robinson TJ, Ryder OA, Ferguson-Smith MA. Karyotypic relationships of horses and zebras: results of cross-species chromosome painting.. Cytogenet Genome Res 2003;102(1-4):235-43.
            pubmed: 14970709doi: 10.1159/000075755google scholar: lookup
          19. Wienberg J, Stanyon R. Comparative painting of mammalian chromosomes.. Curr Opin Genet Dev 1997 Dec;7(6):784-91.
            pubmed: 9468788doi: 10.1016/s0959-437x(97)80041-xgoogle scholar: lookup
          20. Kubickova S, Cernohorska H, Musilova P, Rubes J. The use of laser microdissection for the preparation of chromosome-specific painting probes in farm animals.. Chromosome Res 2002;10(7):571-7.
            pubmed: 12498346doi: 10.1023/a:1020914702767google scholar: lookup
          21. Raudsepp T, Frönicke L, Scherthan H, Gustavsson I, Chowdhary BP. Zoo-FISH delineates conserved chromosomal segments in horse and man.. Chromosome Res 1996 Apr;4(3):218-25.
            pubmed: 8793207doi: 10.1007/BF02254963google scholar: lookup
          22. Yang F, Fu B, O'Brien PC, Nie W, Ryder OA, Ferguson-Smith MA. Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules.. Chromosome Res 2004;12(1):65-76.
          23. Krüger K, Gaillard C, Stranzinger G, Rieder S. Phylogenetic analysis and species allocation of individual equids using microsatellite data.. J Anim Breed Genet 2005 Apr;122 Suppl 1:78-86.
          24. Ryder OA, Chemnick LG. Chromosomal and molecular evolution in Asiatic wild asses.. Genetica 1990;83(1):67-72.
            pubmed: 2090563doi: 10.1007/BF00774690google scholar: lookup
          25. Goh G, Raudsepp T, Durkin K, Wagner ML, Schäffer AA, Agarwala R, Tozaki T, Mickelson JR, Chowdhary BP. High-resolution gene maps of horse chromosomes 14 and 21: additional insights into evolution and rearrangements of HSA5 homologs in mammals.. Genomics 2007 Jan;89(1):89-112.
            pubmed: 16916595doi: 10.1016/j.ygeno.2006.06.012google scholar: lookup
          26. Brinkmeyer-Langford C, Raudsepp T, Lee EJ, Goh G, Schäffer AA, Agarwala R, Wagner ML, Tozaki T, Skow LC, Womack JE, Mickelson JR, Chowdhary BP. A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals.. Mamm Genome 2005 Aug;16(8):631-49.
            pubmed: 16180145doi: 10.1007/s00335-005-0023-1google scholar: lookup
          27. Raudsepp T, Chowdhary BP. Construction of chromosome-specific paints for meta- and submetacentric autosomes and the sex chromosomes in the horse and their use to detect homologous chromosomal segments in the donkey.. Chromosome Res 1999;7(2):103-14.
            pubmed: 10328622doi: 10.1023/a:1009234814635google scholar: lookup
          28. Carbone L, Nergadze SG, Magnani E, Misceo D, Francesca Cardone M, Roberto R, Bertoni L, Attolini C, Francesca Piras M, de Jong P, Raudsepp T, Chowdhary BP, Guérin G, Archidiacono N, Rocchi M, Giulotto E. Evolutionary movement of centromeres in horse, donkey, and zebra.. Genomics 2006 Jun;87(6):777-82.
            pubmed: 16413164doi: 10.1016/j.ygeno.2005.11.012google scholar: lookup
          29. Schermelleh L, Thalhammer S, Heckl W, Pösl H, Cremer T, Schütze K, Cremer M. Laser microdissection and laser pressure catapulting for the generation of chromosome-specific paint probes.. Biotechniques 1999 Aug;27(2):362-7.
            pubmed: 10457845doi: 10.2144/99272rr04google scholar: lookup
          30. Oakenfull EA, Clegg JB. Phylogenetic relationships within the genus Equus and the evolution of alpha and theta globin genes.. J Mol Evol 1998 Dec;47(6):772-83.
            pubmed: 9847419doi: 10.1007/pl00006436google scholar: lookup

          Citations

          This article has been cited 3 times.
          1. Romanenko SA, Serdyukova NA, Perelman PL, Pavlova SV, Bulatova NS, Golenishchev FN, Stanyon R, Graphodatsky AS. Intrachromosomal Rearrangements in Rodents from the Perspective of Comparative Region-Specific Painting.. Genes (Basel) 2017 Aug 30;8(9).
            doi: 10.3390/genes8090215pubmed: 28867774google scholar: lookup
          2. Musilova P, Kubickova S, Vahala J, Rubes J. Subchromosomal karyotype evolution in Equidae.. Chromosome Res 2013 Apr;21(2):175-87.
            doi: 10.1007/s10577-013-9346-zpubmed: 23532666google scholar: lookup
          3. Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SC, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC, Cooper A, Shapiro B, Orlando L. Mitochondrial phylogenomics of modern and ancient equids.. PLoS One 2013;8(2):e55950.
            doi: 10.1371/journal.pone.0055950pubmed: 23437078google scholar: lookup