Molecular and genomic characterization of a novel equine molluscum contagiosum-like virus.
Abstract: Cases of pox-like lesions in horses and donkeys have been associated with poxviruses belonging to different genera of the family . These include the orthopoxviruses vaccinia virus (VACV), horsepoxvirus (HPXV) and cowpoxvirus (CPXV), as well as a potentially novel parapoxvirus and molluscum contagiosum virus (MOCV). However, with the exception of VACV, HPXV and CPXV, the genomic characterization of the causative agents remains largely elusive with only single short genome fragments available. Here we present the first full-length genome sequence of an equine molluscum contagiosum-like virus (EMCLV) directly determined from skin biopsies of a horse with generalized papular dermatitis. Histopathological analysis of the lesions revealed severe epidermal hyperplasia with numerous eosinophilic inclusion bodies within keratinocytes. Virions were detected in the lesions in embedded tissue by transmission electron microscopy. The genome sequence determined by next- and third-generation sequencing comprises 166 843 nt with inverted terminal repeats (ITRs) of 3473 nt. Overall, 20 of the predicted 159 ORFs have no equivalents in other poxviruses. Intriguingly, two of these ORFs were identified to encode homologues of mammalian proteins involved in immune signalling pathways, namely (SECTM1) and (IGFLR1), that were not described in any virus family so far. Phylogenetic analysis with all relevant representatives of the suggests that EMCLV should be nominated as a new species within the genus .
Publication Date: 2020-01-10 PubMed ID: 31922947PubMed Central: PMC8515872DOI: 10.1099/jgv.0.001357Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
- Journal Article
Summary
This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.
The study presents the first full genome sequence of a new virus similar to molluscum contagiosum, which causes pox-like lesions in horses. Genetic characterization is completed and the viral particles are confirmed in skin biopsies, enhancing our understanding of these pathogen types in animals.
Objective and Method
- The research aimed to understand the genetic basis of unusual pox-like lesions observed in horses, which were speculated to be caused by a new virus similar to molluscum contagiosum (a common skin infection in humans).
- To achieve this, the researchers took skin biopsies from a horse exhibiting general papular dermatitis, followed by histopathological analysis of the lesions, revealing severe epidermal hyperplasia with many eosinophilic inclusion bodies within keratinocytes.
- Through transmission electron microscopy, the presence of virions (virus particles) was detected in the lesioned tissues confirming the pathogenic involvement.
- The genome of the virus was thoroughly sequenced using next and third-generation sequencing technologies, signifying the cutting-edge tools at the researchers’ disposal.
Results and Findings
- The full-length genome sequence consisted of 166,843 nucleotides having inverted terminal repeats of 3,473 nucleotides.
- A total of 159 Open Reading Frames (ORFs) were predicted out of which 20 have no equivalents in other known poxviruses, suggesting uniqueness in the new virus’s genetic makeup.
- Interestingly, two of the ORFs were found to encode for mammalian proteins (SECTM1 and IGFLR1) involved in immune signalling pathways. The existence of such analogues has not been previously described in any virus family.
Conclusion and Implication
- Phylogenetic analysis, comparing the new virus’s genetic content with other known representatives from the Poxviridae family, hinted that the Equine Molluscum Contagium-Like Virus (EMCLV) should be designated as a novel species within the Molluscipoxvirus genus.
- This research not only enhances our understanding of the diverse range of poxviruses but also provides valuable insights about newly discovered viruses in animals which may have potential implications in veterinary science and zoonotic disease control.
Cite This Article
APA
Ehmann R, Brandes K, Antwerpen M, Walter M, V Schlippenbach K, Stegmaier E, Essbauer S, Bugert J, Teifke JP, Meyer H.
(2020).
Molecular and genomic characterization of a novel equine molluscum contagiosum-like virus.
J Gen Virol, 102(3), 001357.
https://doi.org/10.1099/jgv.0.001357 Publication
Researcher Affiliations
- Bundeswehr Institute of Microbiology, Munich, Germany.
- Animal Pathology Augsburg, Augsburg, Germany.
- Bundeswehr Institute of Microbiology, Munich, Germany.
- Bundeswehr Institute of Microbiology, Munich, Germany.
- Veterinarian Practice, Zusamaltheim, Germany.
- Makoa Farm, Uswaa, Tanzania.
- Bundeswehr Institute of Microbiology, Munich, Germany.
- Bundeswehr Institute of Microbiology, Munich, Germany.
- Federal Research Institute for Animal Health, Greifswald - Insel Riems, Germany.
- Bundeswehr Institute of Microbiology, Munich, Germany.
MeSH Terms
- Animals
- Female
- Genome, Viral
- High-Throughput Nucleotide Sequencing
- Horse Diseases / virology
- Horses
- Intercellular Signaling Peptides and Proteins / chemistry
- Intercellular Signaling Peptides and Proteins / genetics
- Intercellular Signaling Peptides and Proteins / metabolism
- Membrane Proteins / chemistry
- Membrane Proteins / genetics
- Membrane Proteins / metabolism
- Molluscipoxvirus / genetics
- Molluscipoxvirus / isolation & purification
- Molluscipoxvirus / physiology
- Molluscum contagiosum virus / genetics
- Open Reading Frames
- Phylogeny
- Poxviridae Infections / pathology
- Poxviridae Infections / veterinary
- Poxviridae Infections / virology
- Skin / pathology
- Skin / virology
- Skin Diseases, Viral / pathology
- Skin Diseases, Viral / veterinary
- Skin Diseases, Viral / virology
- Transcription, Genetic
- Viral Proteins / chemistry
- Viral Proteins / genetics
- Viral Proteins / metabolism
- Virus Replication / genetics
- Whole Genome Sequencing
Conflict of Interest Statement
The authors declare that there are no conflicts of interest.
References
This article includes 91 references
- Haller SL, Peng C, McFadden G, Rothenburg S. Poxviruses and the evolution of host range and virulence.. Infect Genet Evol 2014 Jan;21:15-40.
- Damaso CR. Revisiting Jenner's mysteries, the role of the Beaugency lymph in the evolutionary path of ancient smallpox vaccines.. Lancet Infect Dis 2018 Feb;18(2):e55-e63.
- Esparza J, Schrick L, Damaso CR, Nitsche A. Equination (inoculation of horsepox): An early alternative to vaccination (inoculation of cowpox) and the potential role of horsepox virus in the origin of the smallpox vaccine.. Vaccine 2017 Dec 19;35(52):7222-7230.
- Tulman ER, Delhon G, Afonso CL, Lu Z, Zsak L, Sandybaev NT, Kerembekova UZ, Zaitsev VL, Kutish GF, Rock DL. Genome of horsepox virus.. J Virol 2006 Sep;80(18):9244-58.
- Borges IA, Reynolds MG, McCollum AM, Figueiredo PO, Ambrosio LLD, Vieira FN, Costa GB, Matos ACD, de Andrade Almeida VM, Ferreira PCP, Lobato ZIP, Dos Reis JKP, Kroon EG, Trindade GS. Serological Evidence of Orthopoxvirus Circulation Among Equids, Southeast Brazil.. Front Microbiol 2018;9:402.
- Brum MC, Anjos BL, Nogueira CE, Amaral LA, Weiblen R, Flores EF. An outbreak of orthopoxvirus-associated disease in horses in southern Brazil.. J Vet Diagn Invest 2010 Jan;22(1):143-7.
- Campos RK, Brum MC, Nogueira CE, Drumond BP, Alves PA, Siqueira-Lima L, Assis FL, Trindade GS, Bonjardim CA, Ferreira PC, Weiblen R, Flores EF, Kroon EG, Abrahão JS. Assessing the variability of Brazilian Vaccinia virus isolates from a horse exanthematic lesion: coinfection with distinct viruses.. Arch Virol 2011 Feb;156(2):275-83.
- Franke A, Kershaw O, Jenckel M, König L, Beer M, Hoffmann B, Hoffmann D. Fatal Cowpox Virus Infection in an Aborted Foal.. Vector Borne Zoonotic Dis 2016 Jun;16(6):431-3.
- Pfeffer M, Burck G, Meyer H. [Cowpox viruses in Germany: an analysis of 5 cases in 1998].. Berl Munch Tierarztl Wochenschr 1999 Sep;112(9):334-8.
- Kaminjolo JJ, Muhammed SI, Johnson LW, Berger J. Uasin Gishu skin disease of horses in Kenya. 1975.
- Kaminjolo JS Jr, Nyaga PN, Gicho JN. Isolation, cultivation and characterization of a poxvirus from some horses in Kenya.. Zentralbl Veterinarmed B 1974 Aug;21(8):592-601.
- Airas N, Hautaniemi M, Syrjä P, Knuuttila A, Putkuri N, Coulter L, McInnes CJ, Vapalahti O, Huovilainen A, Kinnunen PM. Infection with Possible Novel Parapoxvirus in Horse, Finland, 2013.. Emerg Infect Dis 2016 Jul;22(7):1242-5.
- Osadebe LU, Manthiram K, McCollum AM, Li Y, Emerson GL, Gallardo-Romero NF, Doty JB, Wilkins K, Zhao H, Drew CP, Metcalfe MG, Goldsmith CS, Muehlenbachs A, Googe PB, Dunn J, Duenckel T, Henderson H, Carroll DS, Zaki SR, Denison MR, Reynolds MG, Damon IK. Novel poxvirus infection in 2 patients from the United States.. Clin Infect Dis 2015 Jan 15;60(2):195-202.
- Cooley AJ, Reinhard MK, Gross TL, Fadok VA, Levy M. Molluscum contagiosum in a horse with granulomatous enteritis.. J Comp Pathol 1987 Jan;97(1):29-34.
- Fox R, Thiemann A, Everest D, Steinbach F, Dastjerdi A, Finnegan C. Molluscum contagiosum in two donkeys.. Vet Rec 2012 Jun 23;170(25):649.
- Rahaley RS, Mueller RE. Molluscum contagiosum in a horse.. Vet Pathol 1983 Mar;20(2):247-50.
- Thompson CH, Yager JA, Van Rensburg IB. Close relationship between equine and human molluscum contagiosum virus demonstrated by in situ hybridisation.. Res Vet Sci 1998 Mar-Apr;64(2):157-61.
- Chen X, Anstey AV, Bugert JJ. Molluscum contagiosum virus infection.. Lancet Infect Dis 2013 Oct;13(10):877-88.
- Li Y, Meyer H, Zhao H, Damon IK. GC content-based pan-pox universal PCR assays for poxvirus detection.. J Clin Microbiol 2010 Jan;48(1):268-76.
- Sherwani S, Blythe N, Farleigh L, Bugert JJ. New method for the assessment of molluscum contagiosum virus infectivity.. Methods Mol Biol 2012;890:135-46.
- Kolmogorov M, Yuan J, Lin Y, Pevzner PA. Assembly of long, error-prone reads using repeat graphs.. Nat Biotechnol 2019 May;37(5):540-546.
- Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng Q, Wortman J, Young SK, Earl AM. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.. PLoS One 2014;9(11):e112963.
- Senkevich TG, Koonin EV, Bugert JJ, Darai G, Moss B. The genome of molluscum contagiosum virus: analysis and comparison with other poxviruses.. Virology 1997 Jun 23;233(1):19-42.
- Emerson GL, Nordhausen R, Garner MM, Huckabee JR, Johnson S, Wohrle RD, Davidson WB, Wilkins K, Li Y, Doty JB, Gallardo-Romero NF, Metcalfe MG, Karem KL, Damon IK, Carroll DS. Novel poxvirus in big brown bats, northwestern United States.. Emerg Infect Dis 2013 Jun;19(6):1002-4.
- Bennett M, Tu SL, Upton C, McArtor C, Gillett A, Laird T, O'Dea M. Complete genomic characterisation of two novel poxviruses (WKPV and EKPV) from western and eastern grey kangaroos.. Virus Res 2017 Oct 15;242:106-121.
- Sarker S, Roberts HK, Tidd N, Ault S, Ladmore G, Peters A, Forwood JK, Helbig K, Raidal SR. Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample.. Sci Rep 2017 Nov 28;7(1):16472.
- Mohr S, Grandemange S, Massimi P, Darai G, Banks L, Martinou JC, Zeier M, Muranyi W. Targeting the retinoblastoma protein by MC007L, gene product of the molluscum contagiosum virus: detection of a novel virus-cell interaction by a member of the poxviruses.. J Virol 2008 Nov;82(21):10625-33.
- Sarker S, Isberg SR, Milic NL, Lock P, Helbig KJ. Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world's largest living member of the Crocodylia.. Sci Rep 2018 Apr 4;8(1):5623.
- Mo M, Fleming SB, Mercer AA. Cell cycle deregulation by a poxvirus partial mimic of anaphase-promoting complex subunit 11.. Proc Natl Acad Sci U S A 2009 Nov 17;106(46):19527-32.
- Schmotz C, Uğurlu H, Vilen S, Shrestha S, Fagerlund R, Saksela K. MC159 of Molluscum Contagiosum Virus Suppresses Autophagy by Recruiting Cellular SH3BP4 via an SH3 Domain-Mediated Interaction.. J Virol 2019 May 15;93(10).
- Shisler JL. Immune evasion strategies of molluscum contagiosum virus.. Adv Virus Res 2015;92:201-52.
- Coutu J, Ryerson MR, Bugert J, Brian Nichols D. The Molluscum Contagiosum Virus protein MC163 localizes to the mitochondria and dampens mitochondrial mediated apoptotic responses.. Virology 2017 May;505:91-101.
- Shisler JL, Senkevich TG, Berry MJ, Moss B. Ultraviolet-induced cell death blocked by a selenoprotein from a human dermatotropic poxvirus.. Science 1998 Jan 2;279(5347):102-5.
- Brady G, Haas DA, Farrell PJ, Pichlmair A, Bowie AG. Molluscum Contagiosum Virus Protein MC005 Inhibits NF-κB Activation by Targeting NEMO-Regulated IκB Kinase Activation.. J Virol 2017 Aug 1;91(15).
- Harvey IB, Wang X, Fremont DH. Molluscum contagiosum virus MC80 sabotages MHC-I antigen presentation by targeting tapasin for ER-associated degradation.. PLoS Pathog 2019 Apr;15(4):e1007711.
- Brady G, Haas DA, Farrell PJ, Pichlmair A, Bowie AG. Poxvirus Protein MC132 from Molluscum Contagiosum Virus Inhibits NF-B Activation by Targeting p65 for Degradation.. J Virol 2015 Aug;89(16):8406-15.
- Nichols DB, Shisler JL. Poxvirus MC160 protein utilizes multiple mechanisms to inhibit NF-kappaB activation mediated via components of the tumor necrosis factor receptor 1 signal transduction pathway.. J Virol 2009 Apr;83(7):3162-74.
- Damon I, Murphy PM, Moss B. Broad spectrum chemokine antagonistic activity of a human poxvirus chemokine homolog.. Proc Natl Acad Sci U S A 1998 May 26;95(11):6403-7.
- Xiang Y, Moss B. Determination of the functional epitopes of human interleukin-18-binding protein by site-directed mutagenesis.. J Biol Chem 2001 May 18;276(20):17380-6.
- Xiang Y, Moss B. Molluscum contagiosum virus interleukin-18 (IL-18) binding protein is secreted as a full-length form that binds cell surface glycosaminoglycans through the C-terminal tail and a furin-cleaved form with only the IL-18 binding domain.. J Virol 2003 Feb;77(4):2623-30.
- Slentz-Kesler KA, Hale LP, Kaufman RE. Identification and characterization of K12 (SECTM1), a novel human gene that encodes a Golgi-associated protein with transmembrane and secreted isoforms.. Genomics 1998 Feb 1;47(3):327-40.
- Bianchetti L, Tarabay Y, Lecompte O, Stote R, Poch O, Dejaegere A, Viville S. Tex19 and Sectm1 concordant molecular phylogenies support co-evolution of both eutherian-specific genes.. BMC Evol Biol 2015 Oct 12;15:222.
- Lobito AA, Ramani SR, Tom I, Bazan JF, Luis E, Fairbrother WJ, Ouyang W, Gonzalez LC. Murine insulin growth factor-like (IGFL) and human IGFL1 proteins are induced in inflammatory skin conditions and bind to a novel tumor necrosis factor receptor family member, IGFLR1.. J Biol Chem 2011 May 27;286(21):18969-81.
- Esparza J. Has horsepox become extinct?. Vet Rec 2013 Sep 21;173(11):272-3.
- Medaglia ML, Moussatché N, Nitsche A, Dabrowski PW, Li Y, Damon IK, Lucas CG, Arruda LB, Damaso CR. Genomic Analysis, Phenotype, and Virulence of the Historical Brazilian Smallpox Vaccine Strain IOC: Implications for the Origins and Evolutionary Relationships of Vaccinia Virus.. J Virol 2015 Dec;89(23):11909-25.
- Qin L, Favis N, Famulski J, Evans DH. Evolution of and evolutionary relationships between extant vaccinia virus strains.. J Virol 2015 Feb;89(3):1809-24.
- Schrick L, Tausch SH, Dabrowski PW, Damaso CR, Esparza J, Nitsche A. An Early American Smallpox Vaccine Based on Horsepox.. N Engl J Med 2017 Oct 12;377(15):1491-1492.
- Zorec TM, Kutnjak D, Hošnjak L, Kušar B, Trčko K, Kocjan BJ, Li Y, Križmarić M, Miljković J, Ravnikar M, Poljak M. New Insights into the Evolutionary and Genomic Landscape of Molluscum Contagiosum Virus (MCV) based on Nine MCV1 and Six MCV2 Complete Genome Sequences.. Viruses 2018 Oct 26;10(11).
- Senkevich TG, Bugert JJ, Sisler JR, Koonin EV, Darai G, Moss B. Genome sequence of a human tumorigenic poxvirus: prediction of specific host response-evasion genes.. Science 1996 Aug 9;273(5276):813-6.
- Moens Y, Kombe AH. Molluscum contagiosum in a horse.. Equine Vet J 1988 Mar;20(2):143-5.
- Van Rensburg IB, Collett MG, Ronen N, Gerdes T. Molluscum contagiosum in a horse.. J S Afr Vet Assoc 1991 Jun;62(2):72-4.
- Bagnall BG, Wilson GR. Molluscum contagiosum in a red kangaroo.. Australas J Dermatol 1974 Dec;15(3):115-20.
- McKenzie RA, Fay FR, Prior HC. Poxvirus infection of the skin of an eastern grey kangaroo.. Aust Vet J 1979 Apr;55(4):188-90.
- Douglas JD, Tanner KN, Prine JR, Van Riper DC, Derwelis SK. Molluscum contagiosum in chimpanzees.. J Am Vet Med Assoc 1967 Oct 1;151(7):901-4.
- Wilson TM, Poglayen-Neuwall I. Pox in South American sea lions (Otaria byronia).. Can J Comp Med 1971 Apr;35(2):174-7.
- Baker KS, Leggett RM, Bexfield NH, Alston M, Daly G, Todd S, Tachedjian M, Holmes CE, Crameri S, Wang LF, Heeney JL, Suu-Ire R, Kellam P, Cunningham AA, Wood JL, Caccamo M, Murcia PR. Metagenomic study of the viruses of African straw-coloured fruit bats: detection of a chiropteran poxvirus and isolation of a novel adenovirus.. Virology 2013 Jul 5;441(2):95-106.
- López-Bueno A, Parras-Moltó M, López-Barrantes O, Belda S, Alejo A. Recombination events and variability among full-length genomes of co-circulating molluscum contagiosum virus subtypes 1 and 2.. J Gen Virol 2017 May;98(5):1073-1079.
- Huang B, Jennison A, Whiley D, McMahon J, Hewitson G, Graham R, De Jong A, Warrilow D. Illumina sequencing of clinical samples for virus detection in a public health laboratory.. Sci Rep 2019 Apr 1;9(1):5409.
- Esteban DJ, Nuara AA, Buller RML. Interleukin-18 and glycosaminoglycan binding by a protein encoded by Variola virus.. J Gen Virol 2004 May;85(Pt 5):1291-1299.
- Nazarian SH, Rahman MM, Werden SJ, Villeneuve D, Meng X, Brunetti C, Valeriano C, Wong C, Singh R, Barrett JW, Xiang Y, McFadden G. Yaba monkey tumor virus encodes a functional inhibitor of interleukin-18.. J Virol 2008 Jan;82(1):522-8.
- Smith VP, Bryant NA, Alcamí A. Ectromelia, vaccinia and cowpox viruses encode secreted interleukin-18-binding proteins.. J Gen Virol 2000 May;81(Pt 5):1223-30.
- Dinarello CA. IL-18: A TH1-inducing, proinflammatory cytokine and new member of the IL-1 family.. J Allergy Clin Immunol 1999 Jan;103(1 Pt 1):11-24.
- Xiang Y, Moss B. Correspondence of the functional epitopes of poxvirus and human interleukin-18-binding proteins.. J Virol 2001 Oct;75(20):9947-54.
- Lyman SD, Escobar S, Rousseau AM, Armstrong A, Fanslow WC. Identification of CD7 as a cognate of the human K12 (SECTM1) protein.. J Biol Chem 2000 Feb 4;275(5):3431-7.
- Wang T, Huang C, Lopez-Coral A, Slentz-Kesler KA, Xiao M, Wherry EJ, Kaufman RE. K12/SECTM1, an interferon-γ regulated molecule, synergizes with CD28 to costimulate human T cell proliferation.. J Leukoc Biol 2012 Mar;91(3):449-59.
- Huyton T, Göttmann W, Bade-Döding C, Paine A, Blasczyk R. The T/NK cell co-stimulatory molecule SECTM1 is an IFN "early response gene" that is negatively regulated by LPS in human monocytic cells.. Biochim Biophys Acta 2011 Dec;1810(12):1294-301.
- Lam GK, Liao HX, Xue Y, Alam SM, Scearce RM, Kaufman RE, Sempowski GD, Haynes BF. Expression of the CD7 ligand K-12 in human thymic epithelial cells: regulation by IFN-gamma.. J Clin Immunol 2005 Jan;25(1):41-9.
- Howie D, Garcia Rueda H, Brown MH, Waldmann H. Secreted and transmembrane 1A is a novel co-stimulatory ligand.. PLoS One 2013;8(9):e73610.
- Smith VP, Alcami A. Inhibition of interferons by ectromelia virus.. J Virol 2002 Feb;76(3):1124-34.
- Pontejo SM, Alejo A, Alcami A. Poxvirus-encoded TNF decoy receptors inhibit the biological activity of transmembrane TNF.. J Gen Virol 2015 Oct;96(10):3118-3123.
- Alcamí A, Smith GL. A soluble receptor for interleukin-1 beta encoded by vaccinia virus: a novel mechanism of virus modulation of the host response to infection.. Cell 1992 Oct 2;71(1):153-67.
- Canuti M, van der Hoek L. Virus discovery: are we scientists or genome collectors?. Trends Microbiol 2014 May;22(5):229-31.
- Teifke JP, Kidney BA, Löhr CV, Yager JA. Detection of papillomavirus-DNA in mesenchymal tumour cells and not in the hyperplastic epithelium of feline sarcoids.. Vet Dermatol 2003 Feb;14(1):47-56.
- REYNOLDS ES. The use of lead citrate at high pH as an electron-opaque stain in electron microscopy.. J Cell Biol 1963 Apr;17(1):208-12.
- Andrews S, Krueger F, Segonds-Pichon A, Biggins L, Krueger C. FastQC as found at. 2012.
- De Coster W, D'Hert S, Schultz DT, Cruts M, Van Broeckhoven C. NanoPack: visualizing and processing long-read sequencing data.. Bioinformatics 2018 Aug 1;34(15):2666-2669.
- Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool.. J Mol Biol 1990 Oct 5;215(3):403-10.
- Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+: architecture and applications.. BMC Bioinformatics 2009 Dec 15;10:421.
- Katoh K, Misawa K, Kuma K, Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.. Nucleic Acids Res 2002 Jul 15;30(14):3059-66.
- Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist.. Nucleic Acids Res 2008 Jul 1;36(Web Server issue):W465-9.
- Tcherepanov V, Ehlers A, Upton C. Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome.. BMC Genomics 2006 Jun 13;7:150.
- Marchler-Bauer A, Bo Y, Han L, He J, Lanczycki CJ, Lu S, Chitsaz F, Derbyshire MK, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Lu F, Marchler GH, Song JS, Thanki N, Wang Z, Yamashita RA, Zhang D, Zheng C, Geer LY, Bryant SH. CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.. Nucleic Acids Res 2017 Jan 4;45(D1):D200-D203.
- Söding J, Biegert A, Lupas AN. The HHpred interactive server for protein homology detection and structure prediction.. Nucleic Acids Res 2005 Jul 1;33(Web Server issue):W244-8.
- Zimmermann L, Stephens A, Nam SZ, Rau D, Kübler J, Lozajic M, Gabler F, Söding J, Lupas AN, Alva V. A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core.. J Mol Biol 2018 Jul 20;430(15):2237-2243.
- de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, Gasteiger E, Bairoch A, Hulo N. ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.. Nucleic Acids Res 2006 Jul 1;34(Web Server issue):W362-5.
- Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, Luciani A, Madeira F, Marchler-Bauer A, Mi H, Natale DA, Necci M, Nuka G, Orengo C, Pandurangan AP, Paysan-Lafosse T, Pesseat S, Potter SC, Qureshi MA, Rawlings ND, Redaschi N, Richardson LJ, Rivoire C, Salazar GA, Sangrador-Vegas A, Sigrist CJA, Sillitoe I, Sutton GG, Thanki N, Thomas PD, Tosatto SCE, Yong SY, Finn RD. InterPro in 2019: improving coverage, classification and access to protein sequence annotations.. Nucleic Acids Res 2019 Jan 8;47(D1):D351-D360.
- . UniProt: the universal protein knowledgebase.. Nucleic Acids Res 2017 Jan 4;45(D1):D158-D169.
- Madeira F, Park YM, Lee J, Buso N, Gur T, Madhusoodanan N, Basutkar P, Tivey ARN, Potter SC, Finn RD, Lopez R. The EMBL-EBI search and sequence analysis tools APIs in 2019.. Nucleic Acids Res 2019 Jul 2;47(W1):W636-W641.
- Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.. J Mol Biol 2001 Jan 19;305(3):567-80.
- Käll L, Krogh A, Sonnhammer EL. A combined transmembrane topology and signal peptide prediction method.. J Mol Biol 2004 May 14;338(5):1027-36.
- Cserzö M, Wallin E, Simon I, von Heijne G, Elofsson A. Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method.. Protein Eng 1997 Jun;10(6):673-6.
Citations
This article has been cited 5 times.- Virtanen J, Hautaniemi M, Dutra L, Plyusnin I, Hautala K, Smura T, Vapalahti O, Sironen T, Kant R, Kinnunen PM. Partial Genome Characterization of Novel Parapoxvirus in Horse, Finland. Emerg Infect Dis 2023 Sep;29(9):1941-1944.
- Armero A, Li R, Bienes KM, Chen X, Li J, Xu S, Chen Y, Hughes AC, Berthet N, Wong G. Myotis fimbriatus Virome, a Window to Virus Diversity and Evolution in the Genus Myotis. Viruses 2022 Aug 27;14(9).
- Elasifer H, Wang ECY, Prod'homme V, Davies J, Forbes S, Stanton RJ, Patel M, Fielding CA, Roberts D, Traherne JA, Gruber N, Bugert JJ, Aicheler RJ, Wilkinson GWG. Downregulation of HLA-I by the molluscum contagiosum virus mc080 impacts NK-cell recognition and promotes CD8(+) T-cell evasion. J Gen Virol 2020 Aug;101(8):863-872.
- Al Hamrashdi M, Sanchez Perez C, Haas DA, Vishwakarma J, Pichlmair A, Bowie AG, Brady G. Molluscum contagiosum virus protein MC089 inhibits interferon regulatory factor 3 activation. J Gen Virol 2024 Aug;105(8).
- Wang D, Yang X, Ren Z, Hu B, Zhao H, Yang K, Shi P, Zhang Z, Feng Q, Nawenja CV, Obanda V, Robert K, Nalikka B, Waruhiu CN, Ochola GO, Onyuok SO, Ochieng H, Li B, Zhu Y, Si H, Yin J, Kristiansen K, Jin X, Xu X, Xiao M, Agwanda B, Ommeh S, Li J, Shi ZL. Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation. Microbiome 2024 Apr 10;12(1):72.
Use Nutrition Calculator
Check if your horse's diet meets their nutrition requirements with our easy-to-use tool Check your horse's diet with our easy-to-use tool
Talk to a Nutritionist
Discuss your horse's feeding plan with our experts over a free phone consultation Discuss your horse's diet over a phone consultation
Submit Diet Evaluation
Get a customized feeding plan for your horse formulated by our equine nutritionists Get a custom feeding plan formulated by our nutritionists