Specific detection of all members of the Venezuelan Equine Encephalitis complex: development of a RT-Nested PCR.
Abstract: Venezuelan Equine Encephalitis (VEE) complex belongs to alphavirus genus in the family Togaviridae. Several species of this complex are pathogenic to humans. VEE infections can produce severe or mild disease, and many cases remain undiagnosed. A specific and sensitive reverse transcriptase nested polymerase chain reaction (RT-Nested PCR) method was developed for the detection of all VEE subtypes, including Rio Negro Virus (RNV) (subtype VI), which circulates only in Argentina. Degenerated primers were designed and thermal cycling parameters were standardized. This technique is suitable for rapid and specific detection of these viruses, and may be useful for diagnosis and surveillance.
Copyright © 2012 Elsevier B.V. All rights reserved.
Publication Date: 2012-05-18 PubMed ID: 22609888DOI: 10.1016/j.jviromet.2012.05.009Google Scholar: Lookup
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Summary
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The article discusses the development of a specific and sensitive method, RT-Nested PCR, for the detection of all Venezuelan Equine Encephalitis (VEE) subtypes. This method would help in rapid and precise detection of these viruses, possibly aiding in diagnosis and surveillance.
Objective of the Research
- The primary purpose of the research was to create a highly reliable method, the RT- Nested PCR, to identify all subtypes of Venezuelan Equine Encephalitis (VEE), including the Rio Negro Virus subtype that is only found in Argentina.
Research Background
- VEE complex belongs to the alphavirus genus in the Togaviridae family. Many species in this complex can be pathogenic to humans, leading to both mild and severe diseases. A significant number of VEE infection cases remain undiagnosed due to the lack of an efficient detection method.
Method Development
- For the detection of all VEE subtypes, the researchers developed an RT-Nested PCR method, which is both specific and sensitive. This process involved designing degenerated primers and standardizing thermal cycling parameters.
Results and Impact
- The newly developed method proved effective for the rapid detection of these viruses. Due to its specificity, it could accurately identify the presence of all VEE subtypes without resulting in false positives or negatives.
- Because of its speed and accuracy, this method could greatly aid in the diagnosis and surveillance of diseases caused by the VEE complex, potentially improving public health outcomes in regions where these viruses circulate.
Cite This Article
APA
Pisano MB, Seco MP, Ré VE, Farías AA, Contigiani MS, Tenorio A.
(2012).
Specific detection of all members of the Venezuelan Equine Encephalitis complex: development of a RT-Nested PCR.
J Virol Methods, 186(1-2), 203-206.
https://doi.org/10.1016/j.jviromet.2012.05.009 Publication
Researcher Affiliations
- Instituto de Virología Dr. J. M. Vanella, Facultad de Ciencias Médicas, Universidad Nacional de Córdoba, Córdoba, Argentina. pisanomb@yahoo.com
MeSH Terms
- Animals
- DNA Primers / genetics
- Encephalitis Virus, Venezuelan Equine / classification
- Encephalitis Virus, Venezuelan Equine / genetics
- Encephalitis Virus, Venezuelan Equine / isolation & purification
- Humans
- Polymerase Chain Reaction / methods
- Polymerase Chain Reaction / standards
- Reverse Transcriptase Polymerase Chain Reaction / methods
- Reverse Transcriptase Polymerase Chain Reaction / standards
- Sensitivity and Specificity
- Time Factors
- Virology / methods
- Virology / standards
Citations
This article has been cited 3 times.- Sánchez-Pacheco UA, Bahena-Mondragón BM, Hernández-Piedras FR, Soria-Osorio R, Meneses-Acosta A. Development of a validated molecular analytical method to determine the viral safety of F(AB´)(2) products: A novel application for a well-known technique.. J Virol Methods 2023 May;315:114694.
- Ghietto LM, Gil PI, Olmos Quinteros P, Gomez E, Piris FM, Kunda P, Contigiani M, Paglini MG. Members of Venezuelan Equine Encephalitis complex entry into host cells by clathrin-mediated endocytosis in a pH-dependent manner.. Sci Rep 2022 Aug 25;12(1):14556.
- Shafagati N, Patanarut A, Luchini A, Lundberg L, Bailey C, Petricoin E 3rd, Liotta L, Narayanan A, Lepene B, Kehn-Hall K. The use of Nanotrap particles for biodefense and emerging infectious disease diagnostics.. Pathog Dis 2014 Jul;71(2):164-76.
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