Subchromosomal karyotype evolution in Equidae.
Abstract: Equidae is a small family which comprises horses, African and Asiatic asses, and zebras. Despite equids having diverged quite recently, their karyotypes underwent rapid evolution which resulted in extensive differences among chromosome complements in respective species. Comparative mapping using whole-chromosome painting probes delineated genome-wide chromosome homologies among extant equids, enabling us to trace chromosome rearrangements that occurred during evolution. In the present study, we performed subchromosomal comparative mapping among seven Equidae species, representing the whole family. Region-specific painting and bacterial artificial chromosome probes were used to determine the orientation of evolutionarily conserved segments with respect to centromere positions. This allowed assessment of the configuration of all fusions occurring during the evolution of Equidae, as well as revealing discrepancies in centromere location caused by centromere repositioning or inversions. Our results indicate that the prevailing type of fusion in Equidae is centric fusion. Tandem fusions of the type telomere-telomere occur almost exclusively in the karyotype of Hartmann's zebra and are characteristic of this species' evolution. We revealed inversions in segments homologous to horse chromosomes 3p/10p and 13 in zebras and confirmed inversions in segments 4/31 in African ass, 7 in horse and 8p/20 in zebras. Furthermore, our mapping results suggested that centromere repositioning events occurred in segments homologous to horse chromosomes 7, 8q, 10p and 19 in the African ass and an element homologous to horse chromosome 16 in Asiatic asses. Centromere repositioning in chromosome 1 resulted in three different chromosome types occurring in extant species. Heterozygosity of the centromere position of this chromosome was observed in the kiang. Other subtle changes in centromere position were described in several evolutionary conserved chromosomal segments, suggesting that tiny centromere repositioning or pericentric inversions are quite frequent in zebras and asses.
Publication Date: 2013-03-27 PubMed ID: 23532666DOI: 10.1007/s10577-013-9346-zGoogle Scholar: Lookup
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- Journal Article
- Research Support
- Non-U.S. Gov't
Summary
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The research article studies the quick evolutionary changes in the karyotypes of the Equidae family, which consists of horses, donkeys, and zebras. The study used advanced mapping methods to understand the chromosome rearrangements during the evolution of this family.
Research Methodology
- The researchers performed subchromosomal comparative mapping among seven species from the Equidae family, which represents the entire family.
- They used region-specific painting and bacterial artificial chromosome probes to establish the orientation of evolutionarily conserved segments relative to centromere positions.
- This methodology allowed them to assess the configuration of all fusions that had occurred during the evolution of the Equidae family.
Key Findings
- The predominant kind of fusion in the Equidae family was found to be centric fusion.
- Almost exclusive tandem fusions of the telomere-telomere type were identified in the karyotype of Hartmann’s zebra and were found to be characteristic of the species’ evolution.
- The researchers identified homologous inversions to horse chromosomes 3p/10p and 13 in zebras and indisputable inversions in segments 4/31 in African ass, 7 in horse and 8p/20 in zebras.
- The study also suggested that centromere repositioning events happened in segments homologous to horse chromosomes 7, 8q, 10p and 19 in the African ass and an element homologous to horse chromosome 16 in Asiatic asses.
- Centromere repositioning in chromosome 1 resulted in three different chromosome types appearing in extant species.
- The researchers observed heterozygosity of the centromere position of chromosome 1 in the kiang.
- Moreover, the study proposed that additional, minor changes in centromere position were apparent in several evolutionarily conserved chromosomal segments, suggesting that minute centromere repositioning or pericentric inversions are quite frequent in zebras and asses.
Significance of the Study
- This study provides an invaluable insight into the rapid karyotype evolution in the Equidae family and contributes to our understanding of evolutionary genetics.
- It also introduces advanced mapping methods and highlights their effectiveness in tracing complex chromosomal rearrangements.
- The findings of the study also inform and enhance understanding of the family’s primary mechanisms of structural chromosomal rearrangements during their evolution.
Cite This Article
APA
Musilova P, Kubickova S, Vahala J, Rubes J.
(2013).
Subchromosomal karyotype evolution in Equidae.
Chromosome Res, 21(2), 175-187.
https://doi.org/10.1007/s10577-013-9346-z Publication
Researcher Affiliations
- Department of Genetics and Reproduction, Veterinary Research Institute, Brno, Czech Republic. musilova@vri.cz
MeSH Terms
- Animals
- Centromere / genetics
- Centromere / metabolism
- Chromosome Inversion
- Chromosome Mapping
- Chromosome Painting / methods
- Chromosomes, Artificial, Bacterial
- Equidae / classification
- Equidae / genetics
- Evolution, Molecular
- Gene Rearrangement
- In Situ Hybridization, Fluorescence
- Karyotype
- Species Specificity
- Telomere / genetics
References
This article includes 33 references
- Musilova P, Kubickova S, Vychodilova-Krenkova L, Kralik P, Matiasovic J, Hubertova D, Rubes J, Horin P. Cytogenetic mapping of immunity-related genes in the domestic horse.. Anim Genet 2005 Dec;36(6):507-10.
- Leeb T, Vogl C, Zhu B, de Jong PJ, Binns MM, Chowdhary BP, Scharfe M, Jarek M, Nordsiek G, Schrader F, Blöcker H. A human-horse comparative map based on equine BAC end sequences.. Genomics 2006 Jun;87(6):772-6.
- de la Seña C, Chowdhary BP, Gustavsson I. Localization of the telomeric (TTAGGG)n sequences in chromosomes of some domestic animals by fluorescence in situ hybridization.. Hereditas 1995;123(3):269-74.
- Musilova P, Kubickova S, Zrnova E, Horin P, Vahala J, Rubes J. Karyotypic relationships among Equus grevyi, Equus burchelli and domestic horse defined using horse chromosome arm-specific probes.. Chromosome Res 2007;15(6):807-13.
- Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, Lear TL, Adelson DL, Bailey E, Bellone RR, Blöcker H, Distl O, Edgar RC, Garber M, Leeb T, Mauceli E, MacLeod JN, Penedo MC, Raison JM, Sharpe T, Vogel J, Andersson L, Antczak DF, Biagi T, Binns MM, Chowdhary BP, Coleman SJ, Della Valle G, Fryc S, Guérin G, Hasegawa T, Hill EW, Jurka J, Kiialainen A, Lindgren G, Liu J, Magnani E, Mickelson JR, Murray J, Nergadze SG, Onofrio R, Pedroni S, Piras MF, Raudsepp T, Rocchi M, Røed KH, Ryder OA, Searle S, Skow L, Swinburne JE, Syvänen AC, Tozaki T, Valberg SJ, Vaudin M, White JR, Zody MC, Lander ES, Lindblad-Toh K. Genome sequence, comparative analysis, and population genetics of the domestic horse.. Science 2009 Nov 6;326(5954):865-7.
- Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK. Comparative and demographic analysis of orang-utan genomes.. Nature 2011 Jan 27;469(7331):529-33.
- Kubickova S, Cernohorska H, Musilova P, Rubes J. The use of laser microdissection for the preparation of chromosome-specific painting probes in farm animals.. Chromosome Res 2002;10(7):571-7.
- Trifonov VA, Stanyon R, Nesterenko AI, Fu B, Perelman PL, O'Brien PC, Stone G, Rubtsova NV, Houck ML, Robinson TJ, Ferguson-Smith MA, Dobigny G, Graphodatsky AS, Yang F. Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla.. Chromosome Res 2008;16(1):89-107.
- Brinkmeyer-Langford C, Raudsepp T, Lee EJ, Goh G, Schäffer AA, Agarwala R, Wagner ML, Tozaki T, Skow LC, Womack JE, Mickelson JR, Chowdhary BP. A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals.. Mamm Genome 2005 Aug;16(8):631-49.
- Santani A, Raudsepp T, Chowdhary BP. Interstitial telomeric sites and NORs in Hartmann's zebra (Equus zebra hartmannae) chromosomes.. Chromosome Res 2002;10(7):527-34.
- Musilova P, Kubickova S, Horin P, Vodicka R, Rubes J. Karyotypic relationships in Asiatic asses (kulan and kiang) as defined using horse chromosome arm-specific and region-specific probes.. Chromosome Res 2009;17(6):783-90.
- George M Jr, Ryder OA. Mitochondrial DNA evolution in the genus Equus.. Mol Biol Evol 1986 Nov;3(6):535-46.
- Raudsepp T, Lear TL, Chowdhary BP. Comparative mapping in equids: the asine X chromosome is rearranged compared to horse and Hartmann's mountain zebra.. Cytogenet Genome Res 2002;96(1-4):206-9.
- Richard F, Messaoudi C, Lombard M, Dutrillaux B. Chromosome homologies between man and mountain zebra (Equus zebra hartmannae) and description of a new ancestral synteny involving sequences homologous to human chromosomes 4 and 8.. Cytogenet Cell Genet 2001;93(3-4):291-6.
- Piras FM, Nergadze SG, Poletto V, Cerutti F, Ryder OA, Leeb T, Raimondi E, Giulotto E. Phylogeny of horse chromosome 5q in the genus Equus and centromere repositioning.. Cytogenet Genome Res 2009;126(1-2):165-72.
- Rubes J, Pagacova E, Kopecna O, Kubickova S, Cernohorska H, Vahala J, Di Berardino D. Karyotype, centric fusion polymorphism and chromosomal aberrations in captive-born mountain reedbuck (Redunca fulvorufula).. Cytogenet Genome Res 2007;116(4):263-8.
- Ferguson-Smith MA, Trifonov V. Mammalian karyotype evolution.. Nat Rev Genet 2007 Dec;8(12):950-62.
- Ryder OA, Epel NC, Benirschke K. Chromosome banding studies of the Equidae.. Cytogenet Cell Genet 1978;20(1-6):332-50.
- Robinson TJ, Ruiz-Herrera A, Avise JC. Hemiplasy and homoplasy in the karyotypic phylogenies of mammals.. Proc Natl Acad Sci U S A 2008 Sep 23;105(38):14477-81.
- Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E. Homologous fission event(s) implicated for chromosomal polymorphisms among five species in the genus Equus.. Cytogenet Genome Res 2003;102(1-4):217-21.
- Yang F, Fu B, O'Brien PC, Robinson TJ, Ryder OA, Ferguson-Smith MA. Karyotypic relationships of horses and zebras: results of cross-species chromosome painting.. Cytogenet Genome Res 2003;102(1-4):235-43.
- Musilova P, Kubickova S, Hornak M, Cernohorska H, Vahala J, Rubes J. Different fusion configurations of evolutionarily conserved segments in karyotypes of Potamochoerus porcus and Phacochoerus africanus.. Cytogenet Genome Res 2010;129(4):305-9.
- Raudsepp T, Christensen K, Chowdhar BP. Cytogenetics of donkey chromosomes: nomenclature proposal based on GTG-banded chromosomes and depiction of NORs and telomeric sites.. Chromosome Res 2000;8(8):659-70.
- Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E. FISH analysis comparing genome organization in the domestic horse (Equus caballus) to that of the Mongolian wild horse (E. przewalskii).. Cytogenet Genome Res 2003;102(1-4):222-5.
- Rocchi M, Archidiacono N, Schempp W, Capozzi O, Stanyon R. Centromere repositioning in mammals.. Heredity (Edinb) 2012 Jan;108(1):59-67.
- Yang F, Fu B, O'Brien PC, Nie W, Ryder OA, Ferguson-Smith MA. Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules.. Chromosome Res 2004;12(1):65-76.
- Krüger K, Gaillard C, Stranzinger G, Rieder S. Phylogenetic analysis and species allocation of individual equids using microsatellite data.. J Anim Breed Genet 2005 Apr;122 Suppl 1:78-86.
- Lear TL. Chromosomal distribution of the telomere sequence (TTAGGG)(n) in the Equidae.. Cytogenet Cell Genet 2001;93(1-2):127-30.
- Trifonov VA, Musilova P, Kulemsina AI. Chromosome evolution in Perissodactyla.. Cytogenet Genome Res 2012;137(2-4):208-17.
- Piras FM, Nergadze SG, Magnani E, Bertoni L, Attolini C, Khoriauli L, Raimondi E, Giulotto E. Uncoupling of satellite DNA and centromeric function in the genus Equus.. PLoS Genet 2010 Feb 12;6(2):e1000845.
- Carbone L, Nergadze SG, Magnani E, Misceo D, Francesca Cardone M, Roberto R, Bertoni L, Attolini C, Francesca Piras M, de Jong P, Raudsepp T, Chowdhary BP, Guérin G, Archidiacono N, Rocchi M, Giulotto E. Evolutionary movement of centromeres in horse, donkey, and zebra.. Genomics 2006 Jun;87(6):777-82.
- Schermelleh L, Thalhammer S, Heckl W, Pösl H, Cremer T, Schütze K, Cremer M. Laser microdissection and laser pressure catapulting for the generation of chromosome-specific paint probes.. Biotechniques 1999 Aug;27(2):362-7.
- Oakenfull EA, Clegg JB. Phylogenetic relationships within the genus Equus and the evolution of alpha and theta globin genes.. J Mol Evol 1998 Dec;47(6):772-83.
Citations
This article has been cited 16 times.- Piras FM, Cappelletti E, Abdelgadir WA, Salamon G, Vignati S, Santagostino M, Sola L, Nergadze SG, Giulotto E. A Satellite-Free Centromere in Equus przewalskii Chromosome 10. Int J Mol Sci 2023 Feb 18;24(4).
- Cappelletti E, Piras FM, Sola L, Santagostino M, Abdelgadir WA, Raimondi E, Lescai F, Nergadze SG, Giulotto E. Robertsonian Fusion and Centromere Repositioning Contributed to the Formation of Satellite-free Centromeres During the Evolution of Zebras. Mol Biol Evol 2022 Aug 3;39(8).
- Piras FM, Cappelletti E, Santagostino M, Nergadze SG, Giulotto E, Raimondi E. Molecular Dynamics and Evolution of Centromeres in the Genus Equus. Int J Mol Sci 2022 Apr 10;23(8).
- Li S, Zhao G, Han H, Li Y, Li J, Wang J, Cao G, Li X. Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study. BMC Genomics 2021 Sep 15;22(1):665.
- Musilova P, Kubickova S, Cernohorska H, Rubes J. Comparative chromosome painting in Chacoan peccary, Catagonus wagneri. J Appl Genet 2021 May;62(2):319-321.
- Hamilton GE, Davis TN. Biochemical evidence for diverse strategies in the inner kinetochore. Open Biol 2020 Nov;10(11):200284.
- Renaud G, Petersen B, Seguin-Orlando A, Bertelsen MF, Waller A, Newton R, Paillot R, Bryant N, Vaudin M, Librado P, Orlando L. Improved de novo genomic assembly for the domestic donkey. Sci Adv 2018 Apr;4(4):eaaq0392.
- Nergadze SG, Piras FM, Gamba R, Corbo M, Cerutti F, McCarter JGW, Cappelletti E, Gozzo F, Harman RM, Antczak DF, Miller D, Scharfe M, Pavesi G, Raimondi E, Sullivan KF, Giulotto E. Birth, evolution, and transmission of satellite-free mammalian centromeric domains. Genome Res 2018 Jun;28(6):789-799.
- Romanenko SA, Serdyukova NA, Perelman PL, Pavlova SV, Bulatova NS, Golenishchev FN, Stanyon R, Graphodatsky AS. Intrachromosomal Rearrangements in Rodents from the Perspective of Comparative Region-Specific Painting. Genes (Basel) 2017 Aug 30;8(9).
- Iannuzzi A, Pereira J, Iannuzzi C, Fu B, Ferguson-Smith M. Pooling strategy and chromosome painting characterize a living zebroid for the first time. PLoS One 2017;12(7):e0180158.
- Legrand R, Tiret L, Abitbol M. Two recessive mutations in FGF5 are associated with the long-hair phenotype in donkeys. Genet Sel Evol 2014 Sep 25;46(1):65.
- Jónsson H, Schubert M, Seguin-Orlando A, Ginolhac A, Petersen L, Fumagalli M, Albrechtsen A, Petersen B, Korneliussen TS, Vilstrup JT, Lear T, Myka JL, Lundquist J, Miller DC, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Stagegaard J, Strauss G, Bertelsen MF, Sicheritz-Ponten T, Antczak DF, Bailey E, Nielsen R, Willerslev E, Orlando L. Speciation with gene flow in equids despite extensive chromosomal plasticity. Proc Natl Acad Sci U S A 2014 Dec 30;111(52):18655-60.
- Ali M. Tibetan wild ass, Equus kiang, in the literature: a comprehensive review. J Equine Sci 2025;36(4):115-127.
- Cappelletti E, Piras FM, Biundo M, Bellone RR, Finno CJ, Kalbfleisch TS, Petersen JL, Nergadze SG, Giulotto E. CENP-A and centromere evolution in equids. Chromosome Res 2025 Jun 30;33(1):13.
- Cappelletti E, Piras FM, Biundo M, Raimondi E, Nergadze SG, Giulotto E. CENP-A/CENP-B uncoupling in the evolutionary reshuffling of centromeres in equids. Genome Biol 2025 Feb 6;26(1):23.
- Brannan EO, Hartley GA, O'Neill RJ. Mechanisms of Rapid Karyotype Evolution in Mammals. Genes (Basel) 2023 Dec 31;15(1).
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