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Critical reviews in microbiology2021; 47(5); 543-561; doi: 10.1080/1040841X.2021.1907301

The equine hindgut as a reservoir of mobile genetic elements and antimicrobial resistance genes.

Abstract: Antibiotic resistance in bacterial pathogens is a growing problem for both human and veterinary medicine. Mobile genetic elements (MGEs) such as plasmids, transposons, and integrons enable the spread of antibiotic resistance genes (ARGs) among bacteria, and the overuse of antibiotics drives this process by providing the selection pressure for resistance genes to establish and persist in bacterial populations. Because bacteria, MGEs, and resistance genes can readily spread between different ecological compartments (e.g. soil, plants, animals, humans, wastewater), a "One Health" approach is needed to combat this problem. The equine hindgut is an understudied but potentially significant reservoir of ARGs and MGEs, since horses have close contact with humans, their manure is used in agriculture, they have a dense microbiome of both bacteria and fungi, and many antimicrobials used for equine treatment are also used in human medicine. Here, we collate information to date about resistance genes, plasmids, and class 1 integrons from equine-derived bacteria, we discuss why the equine hindgut deserves increased attention as a potential reservoir of ARGs, and we suggest ways to minimize the selection for ARGs in horses, in order to prevent their spread to the wider community.
Publication Date: 2021-04-24 PubMed ID: 33899656DOI: 10.1080/1040841X.2021.1907301Google Scholar: Lookup
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  • Journal Article
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Summary

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This research focuses on the equine hindgut as a potential source of mobile genetic elements and antibiotic resistance genes. It highlights the importance of a ‘One Health’ approach to tackle antibiotic resistance across different ecological compartments.

Objective of the Research Study

  • The main objective of this research study is to analyze the equine (horse) hindgut as a reservoir for mobile genetic elements (MGEs), such as plasmids, transposons, integrons, and antibiotic resistance genes (ARGs).

Significance of the Problem

  • Antibiotic resistance in bacterial pathogens presents a severe problem for both human and veterinary medicine. The overuse of antibiotics accelerates this process by placing selection pressure on resistance genes, enabling them to establish and persist in bacterial populations.
  • Antibiotic resistance, if not correctly addressed, can spread across different ecological compartments like soil, plants, animals, humans, and wastewater. This interconnectedness calls for a holistic, ‘One Health’ approach to address the issue.

Importance of Studying the Equine Hindgut

  • The equine hindgut may serve as a significant reservoir of ARGs and MGEs. This inference is based on several factors: horses’ close contact with humans, the agricultural use of horse manure, the presence of a dense microbiome of bacteria and fungi in horses, and the shared use of certain antimicrobials in equine treatment and human medicine.
  • Despite this potential significance, the equine hindgut is comparatively understudied, implying a need for increased research attention.

Research Methodology

  • To develop an understanding of this issue, the researchers gathered information about ARGs, plasmids, and class 1 integrons found in bacteria derived from equine sources.

Proposed Solutions

  • The researchers suggest ways to minimize the selection for ARGs in horses to prevent their spread to the wider community. The eventual goal is to underline the need for strategies to reduce the presence and transfer of ARGs in the general population using the ‘One Health’ approach.

Cite This Article

APA
Mitchell S, Bull M, Muscatello G, Chapman B, Coleman NV. (2021). The equine hindgut as a reservoir of mobile genetic elements and antimicrobial resistance genes. Crit Rev Microbiol, 47(5), 543-561. https://doi.org/10.1080/1040841X.2021.1907301

Publication

ISSN: 1549-7828
NlmUniqueID: 8914274
Country: England
Language: English
Volume: 47
Issue: 5
Pages: 543-561

Researcher Affiliations

Mitchell, Scott
  • School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.
Bull, Michelle
  • Quantal Bioscience Pty. Ltd, Parramatta, Australia.
Muscatello, Gary
  • School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.
Chapman, Belinda
  • Quantal Bioscience Pty. Ltd, Parramatta, Australia.
Coleman, Nicholas V
  • School of Life and Environmental Sciences, University of Sydney, Sydney, Australia.

MeSH Terms

  • Animal Feed
  • Animals
  • Anti-Bacterial Agents / pharmacology
  • Bacteria / drug effects
  • Bacteria / genetics
  • Dietary Supplements
  • Drug Resistance, Bacterial / genetics
  • Gastrointestinal Microbiome
  • Gene Transfer, Horizontal
  • Genes, Bacterial
  • Horses / microbiology
  • Interspersed Repetitive Sequences
  • Intestine, Large / microbiology
  • Plasmids
  • Soil

Citations

This article has been cited 6 times.
  1. Pimenta J, Pinto AR, Saavedra MJ, Cotovio M. Equine Gram-Negative Oral Microbiota: An Antimicrobial Resistances Watcher?. Antibiotics (Basel) 2023 Apr 21;12(4).
    doi: 10.3390/antibiotics12040792pubmed: 37107153google scholar: lookup
  2. Tyrnenopoulou P, Fthenakis GC. Clinical Aspects of Bacterial Distribution and Antibiotic Resistance in the Reproductive System of Equids. Antibiotics (Basel) 2023 Mar 28;12(4).
    doi: 10.3390/antibiotics12040664pubmed: 37107026google scholar: lookup
  3. Mitchell SW, Moran RA, Elbourne LDH, Chapman B, Bull M, Muscatello G, Coleman NV. Impacts of Domestication and Veterinary Treatment on Mobile Genetic Elements and Resistance Genes in Equine Fecal Bacteria. Appl Environ Microbiol 2023 Mar 29;89(3):e0159022.
    doi: 10.1128/aem.01590-22pubmed: 36988354google scholar: lookup
  4. Theelen MJP, Luiken REC, Wagenaar JA, Sloet van Oldruitenborgh-Oosterbaan MM, Rossen JWA, Schaafstra FJWC, van Doorn DA, Zomer AL. Longitudinal study of the short- and long-term effects of hospitalisation and oral trimethoprim-sulfadiazine administration on the equine faecal microbiome and resistome. Microbiome 2023 Feb 27;11(1):33.
    doi: 10.1186/s40168-023-01465-6pubmed: 36850017google scholar: lookup
  5. Almutawif YA, Khan NU. Gut microbiome dysbiosis and antimicrobial resistance in the Middle East: a converging public health crisis in conflict and fragile settings. Arch Microbiol 2025 Nov 12;208(1):15.
    doi: 10.1007/s00203-025-04574-ypubmed: 41222715google scholar: lookup
  6. Kabir A, Lamichhane B, Habib T, Adams A, El-Sheikh Ali H, Slovis NM, Troedsson MHT, Helmy YA. Antimicrobial Resistance in Equines: A Growing Threat to Horse Health and Beyond-A Comprehensive Review. Antibiotics (Basel) 2024 Jul 29;13(8).
    doi: 10.3390/antibiotics13080713pubmed: 39200013google scholar: lookup