Use of free text clinical records in identifying syndromes and analysing health data.
Abstract: The analysis of data in clinical records could be useful to epidemiologists in planning analytical studies and identifying new research initiatives. This paper describes the method used to develop a systematic, replicable technique for compressing many words of text into fewer content categories on the basis of explicit rules of user-defined coding, and systematically sorting a large volume of records accurately and reliably. The method was used to categorise the reasons for retirement from racing in Hong Kong of 3727 thoroughbred racehorses between the 1992/93 and 2003/04 racing seasons into a user-defined dictionary. An automated process successfully categorised 95 per cent of the records. The other 5 per cent were assigned manually to one of the dictionary categories. The whole process from initial screening to the categorisation of all the records took approximately 100 man-hours to complete.
Publication Date: 2007-10-24 PubMed ID: 17951562DOI: 10.1136/vr.161.16.547Google Scholar: Lookup
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- Journal Article
- Clinical Findings
- Clinical Pathology
- Clinical Study
- Diagnosis
- Diagnostic Technique
- Disease control
- Disease Diagnosis
- Disease Etiology
- Disease Management
- Disease Outbreaks
- Disease Prevalence
- Disease Surveillance
- Disease Transmission
- Disease Treatment
- Epidemiology
- Equine Diseases
- Equine Health
- Equine Science
- Equine Studies
- Veterinary Practice
Summary
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This study discusses the development of a systematic technique for analyzing large volumes of clinical records to assist in epidemiological research. Implementing this method, the researchers categorised reasons for retirement of thoroughbred racehorses in Hong Kong, showing high success rates and efficiency.
Introduction
- The article focuses on the potential of utilizing clinical records as a resource for planning and deriving new research initiatives in epidemiology. It discusses how large volumes of clinical data can be used to identify patterns and trends in health data.
Method Development
- The researchers devised a method to systematically reduce the large volume of textual data into fewer content categories. This was achieved through developing explicit rules for user-defined coding.
- The goal of this process was to facilitate data analysis by generating a more manageable volume of information to handle. This technique sought to preserve as much original information from the records as possible, while making the data easier to work with for epidemiological studies.
Implementation of the Method
- The methodology was applied to categorize the reasons for retirement among a large dataset of 3727 thoroughbred racehorses in Hong Kong across several racing seasons.
- This process was conducted via the use of an automated user-defined dictionary, created to sort and classify the reasonings behind these retirements.
Results of the Implementation
- The article reports that the automated process was able to successfully categorize 95% of the records.
- The remaining 5% of records that could not be automatically categorized were manually assigned to one of the dictionary categories, demonstrating the necessity of human intervention despite the high efficiency of the system.
- The entire process from initial screening to final categorization of all records took approximately 100 man-hours to complete. This indicates that the method developed was not only effective but also quite efficient considering the large volume of data it was designed to handle.
Conclusion
- The study concludes by highlighting the potential of the developed method in efficiently handling and analyzing large volumes of free-text clinical records. The successful implementation and high success rate shown in this study indicate the method’s potential utility for epidemiologists and other researchers analyzing similar types of data.
Cite This Article
APA
Lam K, Parkin T, Riggs C, Morgan K.
(2007).
Use of free text clinical records in identifying syndromes and analysing health data.
Vet Rec, 161(16), 547-551.
https://doi.org/10.1136/vr.161.16.547 Publication
Researcher Affiliations
- Department of Veterinary Regulation and International Liaison, Hong Kong Jockey Club, Sha Tin Racecourse, Sha Tin, NT, Hong Kong.
MeSH Terms
- Animal Welfare
- Animals
- Automation
- Databases, Factual / statistics & numerical data
- Databases, Factual / trends
- Horses / injuries
- Information Storage and Retrieval
- Physical Conditioning, Animal / adverse effects
- Retrospective Studies
- Sports
Citations
This article has been cited 5 times.- Lustgarten JL, Zehnder A, Shipman W, Gancher E, Webb TL. Veterinary informatics: forging the future between veterinary medicine, human medicine, and One Health initiatives-a joint paper by the Association for Veterinary Informatics (AVI) and the CTSA One Health Alliance (COHA). JAMIA Open 2020 Jul;3(2):306-317.
- Duz M, Marshall JF, Parkin T. Validation of an Improved Computer-Assisted Technique for Mining Free-Text Electronic Medical Records. JMIR Med Inform 2017 Jun 29;5(2):e17.
- Jones-Diette JS, Brennan ML, Cobb M, Doit H, Dean RS. A method for extracting electronic patient record data from practice management software systems used in veterinary practice. BMC Vet Res 2016 Oct 21;12(1):239.
- O'Neill DG, Church DB, McGreevy PD, Thomson PC, Brodbelt DC. Approaches to canine health surveillance. Canine Genet Epidemiol 2014;1:2.
- Welsh CE, Lewis TW, Blott SC, Mellor DJ, Lam KH, Stewart BD, Parkin TD. Preliminary genetic analyses of important musculoskeletal conditions of Thoroughbred racehorses in Hong Kong. Vet J 2013 Dec;198(3):611-5.
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