Validation of imputation between equine genotyping arrays.
Abstract: No abstract available
Publication Date: 2013-10-27 PubMed ID: 24164665PubMed Central: PMC4000747DOI: 10.1111/age.12093Google Scholar: Lookup
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- Journal Article
- Research Support
- N.I.H.
- Extramural
- Validation Study
Cite This Article
APA
McCoy AM, McCue ME.
(2013).
Validation of imputation between equine genotyping arrays.
Anim Genet, 45(1), 153.
https://doi.org/10.1111/age.12093 Publication
Researcher Affiliations
- Veterinary Population Medicine Department, University of Minnesota, St. Paul, MN, 55108, USA.
MeSH Terms
- Animals
- Breeding
- Genotype
- Genotyping Techniques
- Haplotypes
- Horses / genetics
- Linkage Disequilibrium
- Polymorphism, Single Nucleotide
Grant Funding
- K08 AR055713 / NIAMS NIH HHS
- T32 OD010993 / NIH HHS
- T32OD10993 / NIH HHS
References
This article includes 4 references
- Huang L, Li Y, Singleton AB, Hardy JA, Abecasis G, Rosenberg NA, Scheet P. Genotype-imputation accuracy across worldwide human populations.. Am J Hum Genet 2009 Feb;84(2):235-50.
- Ventura R, et al. Proc PAG XXI. 2013 P0529. Available at: www.intlpag.org.
- Browning SR, Browning BL. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering.. Am J Hum Genet 2007 Nov;81(5):1084-97.
- Howie B, Marchini J, Stephens M. Genotype imputation with thousands of genomes.. G3 (Bethesda) 2011 Nov;1(6):457-70.
Citations
This article has been cited 11 times.- Reich P, Falker-Gieske C, Pook T, Tetens J. Development and validation of a horse reference panel for genotype imputation.. Genet Sel Evol 2022 Jul 4;54(1):49.
- Jenkins CA, Schofield EC, Mellersh CS, De Risio L, Ricketts SL. Improving the resolution of canine genome-wide association studies using genotype imputation: A study of two breeds.. Anim Genet 2021 Oct;52(5):703-713.
- Kingsley NB, Hamilton NA, Lindgren G, Orlando L, Bailey E, Brooks S, McCue M, Kalbfleisch TS, MacLeod JN, Petersen JL, Finno CJ, Bellone RR. "Adopt-a-Tissue" Initiative Advances Efforts to Identify Tissue-Specific Histone Marks in the Mare.. Front Genet 2021;12:649959.
- Cook SR, Conzemius MG, McCue ME, Ekenstedt KJ. SNP-based heritability and genetic architecture of cranial cruciate ligament rupture in Labrador Retrievers.. Anim Genet 2020 Oct;51(5):824-828.
- Norton E, Schultz N, Geor R, McFarlane D, Mickelson J, McCue M. Genome-Wide Association Analyses of Equine Metabolic Syndrome Phenotypes in Welsh Ponies and Morgan Horses.. Genes (Basel) 2019 Nov 6;10(11).
- McCoy AM, Beeson SK, Rubin CJ, Andersson L, Caputo P, Lykkjen S, Moore A, Piercy RJ, Mickelson JR, McCue ME. Identification and validation of genetic variants predictive of gait in standardbred horses.. PLoS Genet 2019 May;15(5):e1008146.
- Norton EM, Avila F, Schultz NE, Mickelson JR, Geor RJ, McCue ME. Evaluation of an HMGA2 variant for pleiotropic effects on height and metabolic traits in ponies.. J Vet Intern Med 2019 Mar;33(2):942-952.
- Schaefer RJ, Schubert M, Bailey E, Bannasch DL, Barrey E, Bar-Gal GK, Brem G, Brooks SA, Distl O, Fries R, Finno CJ, Gerber V, Haase B, Jagannathan V, Kalbfleisch T, Leeb T, Lindgren G, Lopes MS, Mach N, da Câmara Machado A, MacLeod JN, McCoy A, Metzger J, Penedo C, Polani S, Rieder S, Tammen I, Tetens J, Thaller G, Verini-Supplizi A, Wade CM, Wallner B, Orlando L, Mickelson JR, McCue ME. Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds.. BMC Genomics 2017 Jul 27;18(1):565.
- Norton EM, Mickelson JR, Binns MM, Blott SC, Caputo P, Isgren CM, McCoy AM, Moore A, Piercy RJ, Swinburne JE, Vaudin M, McCue ME. Heritability of Recurrent Exertional Rhabdomyolysis in Standardbred and Thoroughbred Racehorses Derived From SNP Genotyping Data.. J Hered 2016 Nov;107(6):537-43.
- McCoy AM, Beeson SK, Splan RK, Lykkjen S, Ralston SL, Mickelson JR, McCue ME. Identification and validation of risk loci for osteochondrosis in standardbreds.. BMC Genomics 2016 Jan 12;17:41.
- Frischknecht M, Neuditschko M, Jagannathan V, Drögemüller C, Tetens J, Thaller G, Leeb T, Rieder S. Imputation of sequence level genotypes in the Franches-Montagnes horse breed.. Genet Sel Evol 2014 Oct 1;46(1):63.
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