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Topic:Molecular biology

Molecular biology in horses involves the study of molecular processes and genetic mechanisms that underpin equine physiology and health. This field encompasses the analysis of DNA, RNA, proteins, and other biomolecules to understand gene expression, genetic variation, and cellular functions in horses. Techniques such as genomic sequencing, gene expression profiling, and molecular diagnostics are employed to explore topics like hereditary diseases, performance traits, and immune responses in equines. This page assembles peer-reviewed research studies and scholarly articles that investigate the molecular biology of horses, focusing on genetic research, molecular techniques, and their applications in equine science.
Construction of chromosome-specific paints for meta- and submetacentric autosomes and the sex chromosomes in the horse and their use to detect homologous chromosomal segments in the donkey. Raudsepp T, Chowdhary BP.A pilot study comparing horse and donkey karyotypes on a molecular basis was initiated using the chromosomal microdissection approach. All equine meta- and submetacentric chromosomes, viz. ECA1 to ECA13 and the X and Y chromosomes, were microdissected. The DNA was PCR amplified, non-radioactively labelled and used as probes on equine metaphase chromosomes to confirm their origin. Once tested, the paints were used as probes on donkey metaphase chromosomes to detect homologous chromosomal segments between the two species. The results not only detected conservation of whole chromosome and/or arm ...
[O,O-dialkyl-S-bromomethylthiophosphates–inhibitors of mammalian choline- and carboxyl esterases: structure-activity relationship].
Bioorganicheskaia khimiia    May 11, 1999   Volume 25, Issue 1 3-7 
Makhaeva GF, Iankovskaia VL, Kovaleva NV, Fetisov VI, Malygin VV, Torgasheva NA, Khaskin BA.The interaction kinetics of potential pesticides, O,O-dialkyl S-bromomethylthiophosphates (RO)2P(O) SCH2Br (R = Et, i-Pr, n-Pr, n-Bu, or n-Am) with acetylcholinesterase, butyryl cholinesterase, and carboxyl esterase from warm-blooded animals was studied. All the compounds irreversibly inhibit these esterases, with k1 (M-1 min-1) being 1.8 x 10(4) - 1.9 x 10(6) for acetylcholinesterase, 2.0 x 10(6) - 4.1 x 10(7) for the more sensitive butyryl cholinesterase, and 2.3 x 10(7) - 2.3 x 10(8) and higher for the most sensitive carboxyl esterase. By using the Hansch and Kubinyi technique of multiple r...
Isolation and characterization of a novel Forssman active acidic glycosphingolipid with branched isoglobo-, ganglio-, and neolacto-series hybrid sugar chains.
Journal of biochemistry    April 30, 1999   Volume 125, Issue 5 923-930 doi: 10.1093/oxfordjournals.jbchem.a022370
Yamamoto H, Iida-Tanaka N, Kasama T, Ishizuka I, Kushi Y, Handa S.Equine kidney and spleen contain a Forssman active glycosphingolipid, and the structure of this glycolipid has been reported to be that of a globopentaosylceramide (GalNAcalpha-1,3GalNAcbeta-1,3Galalpha-1, 4Galbeta-1,4Glcbeta-1,1'Ceramide). We found that equine kidney contains several other anti-Forssman antibody-reactive glycosphingolipids. One of these acidic Forssman active glycosphingolipids was isolated and characterized by means of NMR, mass spectrometry, permethylation studies, and TLC-immunostaining. This glycolipid contains three moles of galactose, one mole of glucose, three moles of...
Multiple DNA markers differentiate Sarcocystis neurona and Sarcocystis falcatula.
The Journal of parasitology    April 29, 1999   Volume 85, Issue 2 221-228 
Tanhauser SM, Yowell CA, Cutler TJ, Greiner EC, MacKay RJ, Dame JB.Studies designed to investigate the causative agent of equine protozoal myeloencephalitis and its life cycle have been hampered by the marked similarity of Sarcocystis neurona to other Sarcocystis spp. present in the same definitive host. Random-amplified polymorphic DNA techniques were used to amplify DNA from isolates of S. neurona and Sarcocystis falcatula. DNA sequence analysis of polymerase chain reaction (PCR) products was then used to design PCR primers to amplify specific Sarcocystis spp. DNA products. The ribosomal RNA internal transcribed spacer was also amplified and compared betwee...
Identification of a new aspartic proteinase expressed by the outer chorionic cell layer of the equine placenta.
Biology of reproduction    April 20, 1999   Volume 60, Issue 5 1069-1077 doi: 10.1095/biolreprod60.5.1069
Green JA, Xie S, Szafranska B, Gan X, Newman AG, McDowell K, Roberts RM.The pregnancy-associated glycoproteins (PAGs) are placental antigens that were initially characterized as pregnancy markers in the maternal circulation of domestic ruminant species. They are members of the aspartic proteinase gene family, having greatest sequence identity with pepsinogens. However, some are not capable of functioning as enzymes. The PAGs are associated with a large gene family within the Artiodactyla order (cattle, camels, pigs). So far, no members of this family have been characterized in species outside this order. This report describes the cloning and initial characterizati...
Molecular epidemiological studies of veterinary arboviral encephalitides.
Veterinary journal (London, England : 1997)    April 16, 1999   Volume 157, Issue 2 123-138 doi: 10.1053/tvjl.1998.0289
Weaver SC, Powers AM, Brault AC, Barrett AD.Recent studies using molecular genetic approaches have made important contributions to our understanding of the epidemiology of veterinary arboviral encephalitides. Viruses utilizing avian enzootic hosts, such as Western equine encephalitis virus (WEEV) and North American Eastern equine encephalitis virus (EEEV), evolve as relatively few, highly conserved genotypes that extend over wide geographic regions; viruses utilizing mammalian hosts with more limited dispersal evolve within multiple genotypes, each geographically restricted. Similar findings have been reported for Australian alphaviruse...
Gag protein epitopes recognized by CD4(+) T-helper lymphocytes from equine infectious anemia virus-infected carrier horses.
Journal of virology    April 10, 1999   Volume 73, Issue 5 4257-4265 doi: 10.1128/JVI.73.5.4257-4265.1999
Lonning SM, Zhang W, McGuire TC.Antigen-specific T-helper (Th) lymphocytes are critical for the development of antiviral humoral responses and the expansion of cytotoxic T lymphocytes (CTL). Identification of relevant Th lymphocyte epitopes remains an important step in the development of an efficacious subunit peptide vaccine against equine infectious anemia virus (EIAV), a naturally occurring lentivirus of horses. This study describes Th lymphocyte reactivity in EIAV carrier horses to two proteins, p26 and p15, encoded by the relatively conserved EIAV gag gene. Using partially overlapping peptides, multideterminant and poss...
Molecular dynamics simulation of alpha-lactalbumin and calcium binding c-type lysozyme.
Protein engineering    April 9, 1999   Volume 12, Issue 2 129-139 doi: 10.1093/protein/12.2.129
Iyer LK, Qasba PK.Alpha-lactalbumins (LAs) and c-type lysozymes (LYZs) are two classes of proteins which have a 35-40% sequence homology and share a common three dimensional fold but perform different functions. Lysozymes bind and cleave the glycosidic bond linkage in sugars, where as, alpha-lactalbumin does not bind sugar but participates in the synthesis of lactose. Alpha-lactalbumin is a metallo-protein and binds calcium, where as, only a few of the LYZs bind calcium. These proteins consist of two domains, an alpha-helical and a beta-strand domain, separated by a cleft. Calcium is bound at a loop situated at...
The gamma2 late glycoprotein K promoter of equine herpesvirus 1 is differentially regulated by the IE and EICP0 proteins.
Virology    April 7, 1999   Volume 256, Issue 2 173-179 doi: 10.1006/viro.1999.9608
Kim SK, Bowles DE, O'callaghan DJ.The equine herpesvirus 1 immediate-early (IE) phosphoprotein is essential for the activation of transcription from viral early and late promoters and trans-represses its own promoter. Transient-transfection assays showed that the IE protein trans-represses the gamma2 late gK promoter. Gel shift and DNase I footprinting assays demonstrated that the IE protein binds to the gK promoter sequences from -42 to -26 and from -13 to +12 that overlap the transcription initiation site (+1). These results indicated that the IE protein binds to the transcription initiation site of the gK promoter sequences...
A sensitive polymerase chain reaction based assay for the detection of Setaria digitata: the causative organism of cerebrospinal nematodiasis in goats, sheep and horses.
Veterinary parasitology    April 6, 1999   Volume 81, Issue 3 225-233 doi: 10.1016/s0304-4017(98)00248-9
Wijesundera WS, Chandrasekharan NV, Karunanayake EH.A sensitive PCR assay for the detection of Setaria digitata has been developed. Two oligonucleotide primers (17 nt) were designed from a previously cloned and characterized tandemly arranged repetitive sequence of Setaria digitata. Using these primers, it was possible to amplify small quantities (100 fg) of S. digitata genomic DNA. A simple procedure, using proteinase K and non-ionic detergent NP 40, was followed to process the host blood samples and mosquitoes harbouring L3 larvae. The sensitivity of the polymerase chain reaction based assay surpasses the microscopic detection and the previou...
Presence and comparison of angiotensin converting enzyme in commercial cell culture sera.
Biochemistry and molecular biology international    March 27, 1999   Volume 47, Issue 1 107-115 doi: 10.1080/15216549900201103
Bramucci M, Miano A, Quassinti L, Maccari E, Murri O, Amici D.This study was conducted to determine the presence of the angiotensin converting enzyme in commercial sera used in cell culture medium. The aim of the research was to bring the presence of proteinases (angiotensin converting enzyme) to cell culture users' knowledge and to give some data for solving problems about the development of peptides as useful drugs. The enzymes, purified from foetal bovine, adult bovine, foetal equine, adult equine, and human sera, showed molecular weights of about 170 kDa. Captopril and lisinopril inhibited enzyme activities at nanomolar concentrations. The enzymes we...
Long terminal repeat sequences of equine infectious anaemia virus are a major determinant of cell tropism.
The Journal of general virology    March 26, 1999   Volume 80 ( Pt 3) 755-759 doi: 10.1099/0022-1317-80-3-755
Payne SL, La Celle K, Pei XF, Qi XM, Shao H, Steagall WK, Perry S, Fuller F.The Wyoming strain of equine infectious anaemia virus (EIAV) is a highly virulent field strain that replicates to high titre in vitro only in primary equine monocyte-derived macrophages. In contrast, Wyoming-derived fibroblast-adapted EIAV strains (Malmquist virus) replicate in primary foetal equine kidney and equine dermis cells as well as in the cell lines FEA and Cf2Th. Wyoming and Malmquist viruses differ extensively both in long terminal repeat (LTR) and envelope region sequences. We have compared the promoter activities of the Wyoming LTR with those of LTRs derived from fibroblast-adapte...
Detection and induction of equine infectious anemia virus-specific cytotoxic T-lymphocyte responses by use of recombinant retroviral vectors.
Journal of virology    March 12, 1999   Volume 73, Issue 4 2762-2769 doi: 10.1128/JVI.73.4.2762-2769.1999
Lonning SM, Zhang W, Leib SR, McGuire TC.Cytotoxic T lymphocytes (CTL) appear to be critical in resolving or reducing the severity of lentivirus infections. Retroviral vectors expressing the Gag/Pr or SU protein of the lentivirus equine infectious anemia virus (EIAV) were constructed and used to evaluate EIAV-specific CTL responses in horses. Three promoters, cytomegalovirus, simian virus SV40, and Moloney murine sarcoma virus (MoMSV) long terminal repeat (LTR), were used, and there was considerable variation in their ability to direct expression of Gag/Pr and SU. Vectors expressing EIAV proteins under the direction of MoMSV LTR and ...
Twelve equine dinucleotide repeats at microsatellite loci UCDEQ304, UCDEQ380, UCDEQ387, UCDEQ411, UCDEQ439, UCDEQ440, UCDEQ455, UCDEQ457, UCDEQ464, UCDEQ465, UCDEQ482 and UCDEQ497.
Animal genetics    March 2, 1999   Volume 30, Issue 1 69-70 doi: 10.1046/j.1365-2052.1999.00323-5.x
Eggleston-Stott ML, DelValle A, Bautista M, Dileanis S, Wictum E.No abstract available
Five equine dinucleotide microsatellite loci HTG17, HTG20, HTG21, HTG28 and HTG31.
Animal genetics    March 2, 1999   Volume 30, Issue 1 70-71 doi: 10.1046/j.1365-2052.1999.00323-6.x
Lindgren G, Persson H, Ellegren H.No abstract available
Genetic polymorphisms of equine microsatellite loci: TKY16, TKY19 and TKY21.
Animal genetics    March 2, 1999   Volume 30, Issue 1 68-69 doi: 10.1046/j.1365-2052.1999.00323-4.x
Kakoi H, Tozaki T, Hirota K, Mashima S.No abstract available
Comparative mapping of 18 equine type I genes assigned by somatic cell hybrid analysis.
Mammalian genome : official journal of the International Mammalian Genome Society    March 2, 1999   Volume 10, Issue 3 271-276 doi: 10.1007/s003359900985
Caetano AR, Pomp D, Murray JD, Bowling AT.Polymerase chain reaction primers designed from horse cDNA sequences and from consensus sequences highly conserved in mammalian species were used to amplify markers for synteny mapping 18 equine type I genes. These markers were used to screen a horse-mouse somatic cell hybrid panel (UCDavis SCH). Fourteen primer sets amplified horse-specific fragments, while restriction enzyme digests of PCR products were used to distinguish the fragments amplified from horse and mouse with four primer sets. Synteny assignments were made based on correlation values between each marker tested and other markers ...
A synteny map of the horse genome comprised of 240 microsatellite and RAPD markers.
Animal genetics    March 2, 1999   Volume 30, Issue 1 1-9 doi: 10.1046/j.1365-2052.1999.00377.x
Shiue YL, Bickel LA, Caetano AR, Millon LV, Clark RS, Eggleston ML, Michelmore R, Bailey E, Guérin G, Godard S, Mickelson JR, Valberg SJ, Murray JD....To generate a domestic horse genome map we integrated synteny information for markers screened on a somatic cell hybrid (SCH) panel with published information for markers physically assigned to chromosomes. The mouse-horse SCH panel was established by fusing pSV2neo transformed primary horse fibroblasts to either RAG or LMTk mouse cells, followed by G418 antibiotic selection. For each of the 108 cell lines of the panel, we defined the presence or absence of 240 genetic markers by PCR, including 58 random amplified polymorphic DNA (RAPD) markers and 182 microsatellites. Thirty-three syntenic gr...
Close association between sequence polymorphism in the KIT gene and the roan coat color in horses.
Mammalian genome : official journal of the International Mammalian Genome Society    March 2, 1999   Volume 10, Issue 3 283-288 doi: 10.1007/s003359900987
Marklund S, Moller M, Sandberg K, Andersson L.The roan coat color in horses is controlled by a dominant allele that is lethal in the homozygous condition. Phenotypic similarities to some pigmentation disorders in human and mouse, combined with comparative mapping data, identified KIT, encoding the mast cell growth factor receptor, as a major candidate gene for the roan locus (Rn). Rn has previously been mapped to equine linkage group (LG) II. In this study, LGII was expanded with KIT and PDGFRA (platelet-derived growth factor receptor alpha) by use of RFLP and linkage analysis. Moreover, highly significant linkage disequilibrium between R...
Comparison of horse chromosome 3 with donkey and human chromosomes by cross-species painting and heterologous FISH mapping.
Mammalian genome : official journal of the International Mammalian Genome Society    March 2, 1999   Volume 10, Issue 3 277-282 doi: 10.1007/s003359900986
Raudsepp T, Kijas J, Godard S, Guérin G, Andersson L, Chowdhary BP.The melanocortin 1 receptor (MC1R), mast/stem cell growth factor receptor (KIT), and platelet-derived growth factor receptor alpha (PDGFRA) are loci that all belong to equine linkage group 2 (LG2). Of these, KIT was fluorescent in situ hybridization (FISH) mapped to ECA3q21 with equine cDNA and heterologous porcine BAC probes, while MC1R was localized to ECA3p12 and PDGFRA to ECA3q21 with heterologous porcine BAC probes. A three-step comparison between ECA3 and donkey chromosomes was carried out. First, microdissected ECA3 painting probe was used on donkey chromosomes, which showed disruption ...
Glutathione-independent prostaglandin D2 synthase in ram and stallion epididymal fluids: origin and regulation.
Biology of reproduction    February 20, 1999   Volume 60, Issue 3 558-566 doi: 10.1095/biolreprod60.3.558
Fouchécourt S, Dacheux F, Dacheux JL.Microsequencing after two-dimensional electrophoresis revealed a major protein, glutathione-independent prostaglandin D2 synthase (PGDS) in the anterior epididymal region fluid of the ram and stallion. In this epididymal region, PGDS was a polymorphic compound with a molecular mass around 30 kDa and a range of pI from 4 to 7. PGDS represented 15% and 8% of the total luminal proteins present in this region in the ram and stallion, respectively. The secretion of the protein as judged by in vitro biosynthesis, and the presence of its mRNA as studied by Northern blot analysis, were limited to the ...
Scrotal heat stress induces altered sperm chromatin structure associated with a decrease in protamine disulfide bonding in the stallion.
Biology of reproduction    February 20, 1999   Volume 60, Issue 3 615-620 doi: 10.1095/biolreprod60.3.615
Love CC, Kenney RM.A variety of testicular insults can induce changes in the structure of spermatozoal chromatin, resulting in spermatozoal DNA that is more susceptible to acid-induced denaturation. The degree of change in the DNA can be measured using the sperm chromatin structure assay (SCSA). The SCSA measures the relative amounts of single- and double-stranded DNA after staining with the metachromatic dye, acridine orange. Here we used a stallion model (n = 4) to study the effects of scrotal heat stress on spermatozoal DNA. This model was created by insulating stallion testes for 48 h and collecting sperm da...
Quantitative measurement of equine cytokine mRNA expression by polymerase chain reaction using target-specific standard curves.
Journal of immunological methods    February 18, 1999   Volume 222, Issue 1-2 155-169 doi: 10.1016/s0022-1759(98)00193-8
Swiderski CE, Klei TR, Horohov DW.Quantification of cytokine mRNA using reverse transcription coupled with the polymerase chain reaction (RT-PCR) has become a corner stone of the study of cytokine regulation. Quantitative competitive RT-PCR (QCRT-PCR) is commonly accepted as a reliable method for quantifying differences in mRNA levels but is both labor- and reagent-intensive. A noncompetitive polymerase chain reaction method that utilizes cytokine-specific, plasmid-derived, standard curves was developed for the quantification of equine cytokine mRNA. The assay can be performed on minute samples of cellular material, utilizes s...
Quantitation of equine cytokine mRNA expression by reverse transcription-competitive polymerase chain reaction.
Veterinary immunology and immunopathology    February 9, 1999   Volume 67, Issue 1 1-15 doi: 10.1016/s0165-2427(98)00212-8
Giguère S, Prescott JF.A reverse transcription-competitive polymerase chain reaction (RT-cPCR) method was developed to quantitate equine interleukin (IL)-1alpha, IL-1beta, IL-2, IL-4, IL-5, IL-6, IL-10, IL-12 p35, IL-12 p40, interferon-gamma (INF-gamma), tumor necrosis factor-alpha (TNF-alpha), and beta-actin mRNA expression. Using primers based on equine-specific sequences, these cytokines could be detected in concanavalin A-stimulated peripheral blood mononuclear cells. The specificity of the amplified product was confirmed by sequencing. For each cytokine, the assay was made quantitative by generating competitor ...
Human chorionic gonadotropin induces an inverse regulation of steroidogenic acute regulatory protein messenger ribonucleic acid in theca interna and granulosa cells of equine preovulatory follicles.
Endocrinology    February 2, 1999   Volume 140, Issue 2 667-674 doi: 10.1210/endo.140.2.6499
Kerban A, Boerboom D, Sirois J.The time- and gonadotropin-dependent regulation of steroidogenic acute regulatory protein (StAR) has not been characterized in vivo in preovulatory follicles of large monoovulatory species or sexually mature animals. The objectives of this study were to clone equine StAR and describe the regulation of its messenger RNA (mRNA) in equine follicles after the administration of an ovulatory dose of hCG. The screening of an equine follicle complementary DNA (cDNA) library with a mouse StAR cDNA probe revealed two forms of equine StAR that differ only in the length of their 3'-untranslated region (3'...
Two SINE families associated with equine microsatellite loci.
Mammalian genome : official journal of the International Mammalian Genome Society    January 29, 1999   Volume 10, Issue 2 140-144 doi: 10.1007/s003359900959
Gallagher PC, Lear TL, Coogle LD, Bailey E.BLAST searches of 61 equine microsatellite sequences revealed two related families of retroposons. The first family included seven markers, all of which showed significant homology to the Equine Repetitive Element-1 (ERE-1) Short Interspersed Nucleotide Element (SINE) sequence. Length of homology ranged from 76 to 171 bases with identities to the ERE-1 consensus sequence ranging from 71% to 83%. The second family referred to as Equine Repetitive Element-2 (ERE-2) has a consensus sequence that showed homology to ERE-1 over approximately 60 bases. These 60 bases comprised subunit I. Sequence com...
Purification of two equine pepsinogens by use of high-performance liquid chromatography.
American journal of veterinary research    January 26, 1999   Volume 60, Issue 1 114-118 
Sayegh AI, Anderson NV, Harding JW, Cerpovicz P, DeBowes RM, Ritter RC, Baker GJ, Reeck G.To purify and characterize pepsinogens in equine gastric mucosa. Methods: Stomachs collected from 2 healthy horses at necropsy. Methods: After collection, stomachs were placed immediately in ice before storage at -48 C. After slow thawing, the mucosa was scraped off while the tissue was immersed in 0.1M potassium phosphate (pH 7.4) at 4 C, then was homogenized. The filtered extract was subjected to anion-exchange chromatography. Fractions that were found to contain pepsin or pepsinogen were further chromatographed. Individual fractions were tested for pepsinogen or pepsin content by monitoring...
Metmyoglobin/azide: the effect of heme-linked ionizations on the rate of complex formation.
Archives of biochemistry and biophysics    January 26, 1999   Volume 362, Issue 1 148-158 doi: 10.1006/abbi.1998.0991
Lin J, Merryweather J, Vitello LB, Erman JE.The kinetics of formation and dissociation of the horse metmyoglobin/azide complex has been investigated between pH 3.5 and 11.5. The ionic strength dependence of the reaction has been determined at integral pH values between 5 and 10. Hydrazoic acid, HN3, binds to metmyoglobin with a rate constant of (3.8 +/- 1.0) x 10(5) M-1 s-1. Protonation of a group with an apparent pKa of 4.0 +/- 0.3 increases the rate of HN3 binding 6.5-fold to (2.5 +/- 0.8) x 10(6) M-1 s-1. The ionizable group is attributed to the distal histidine, His-64. The azide anion, N-3, binds to metmyoglobin with a rate constan...
Eight new equine dinucleotide repeat microsatellites at the NVHEQ26, NVHEQ29, NVHEQ31, NVHEQ40, NVHEQ43, NVHEQ90, NVHEQ98 and NVHEQ100 loci.
Animal genetics    January 12, 1999   Volume 29, Issue 6 470 
Røed KH, Midthjell L, Bjørnstad G.No abstract available
Fourteen new polymorphic equine microsatellites.
Animal genetics    January 12, 1999   Volume 29, Issue 6 469-470 
George LA, Miller LM, Valberg SJ, Mickelson JR.No abstract available