Analyze Diet
EFSA journal. European Food Safety Authority2022; 20(5); e07311; doi: 10.2903/j.efsa.2022.7311

Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Escherichia coli in dogs and cats, horses, swine, poultry, cattle, sheep and goats.

Abstract: () was identified among the most relevant antimicrobial-resistant (AMR) bacteria in the EU for dogs and cats, horses, swine, poultry, cattle, sheep and goats in previous scientific opinions. Thus, it has been assessed according to the criteria of the Animal Health Law (AHL), in particular criteria of Article 7 on disease profile and impacts, Article 5 on its eligibility to be listed, Annex IV for its categorisation according to disease prevention and control rules as in Article 9 and Article 8 for listing animal species related to the bacterium. The assessment has been performed following a methodology previously published. The outcome is the median of the probability ranges provided by the experts, which indicates whether each criterion is fulfilled (lower bound ≥ 66%) or not (upper bound ≤ 33%), or whether there is uncertainty about fulfilment. Reasoning points are reported for criteria with uncertain outcome. According to the assessment here performed, it is uncertain whether AMR can be considered eligible to be listed for Union intervention according to Article 5 of the AHL (33-66% probability). According to the criteria in Annex IV, for the purpose of categorisation related to the level of prevention and control as in Article 9 of the AHL, the AHAW Panel concluded that the bacterium does not meet the criteria in Sections 1, 2, 3 and 4 (Categories A, B, C and D; 0-5%, 5-10%, 10-33% and 10-33% probability of meeting the criteria, respectively) and the AHAW Panel was uncertain whether it meets the criteria in Section 5 (Category E, 33-66% probability of meeting the criteria). The animal species to be listed for AMR according to Article 8 criteria include mammals, birds, reptiles and fish.
Publication Date: 2022-05-10 PubMed ID: 35582363PubMed Central: PMC9087955DOI: 10.2903/j.efsa.2022.7311Google Scholar: Lookup
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
  • Journal Article

Summary

This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.

The research article discusses the assessment of antimicrobial-resistant (AMR) Escherichia coli in various animals using the framework of the Animal Health Law (AHL) of the EU. This bacterium’s suitability for listing for Union intervention is unclear, with its probability falling between 33% – 66%, and it does not meet most of the criteria set out for disease prevention and control.

Objective of the Research

  • This study mainly aimed to evaluate the antimicrobial-resistant (AMR) Escherichia coli, a bacterium, in different animal groups such as dogs, cats, horses, swine, poultry, cattle, sheep, and goats, within the framework of the Animal Health Law (AHL) of the EU.

Methodology

  • The researchers utilized a previously published method for their assessment. The evaluation was based on different criteria outlined in the AHL.
  • The criteria evaluated include disease profile and impact (Article 7), eligibility to be listed (Article 5), the categorisation of prevention and control rules (Annex IV of Article 9), and the listing of animal species linked to the bacterium (Article 8).

Results of the Research

  • The outcome of the assessment is given as a median of the probability ranges, helping determine if each criterion has been met, unmet, or is indefinite. A criterion is considered met if the lower bound is above or equals 66%, unmet if the upper bound is less or equals 33%, and uncertain if it’s in between.
  • It was found uncertain if AMR E. coli can be listed for the intervention by the Union, with a probability range between 33% to 66% according to Article 5 of the AHL.
  • Furthermore, as per the criteria in Annex IV and Article 9 of AHL, the researchers concluded that E. coli does not meet most of the criteria for disease prevention and control. The scientists were uncertain if it meets category E, with a 33-66% probability.
  • Animals that can be listed for AMR E. coli according to Article 8 criteria include mammals, birds, reptiles, and fish.

Cite This Article

APA
Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortázar C, Herskin M, Michel V, Miranda Chueca MÁ, Padalino B, Pasquali P, Roberts HC, Spoolder H, Ståhl K, Velarde A, Viltrop A, Winckler C, Baldinelli F, Broglia A, Kohnle L, Alvarez J. (2022). Assessment of listing and categorisation of animal diseases within the framework of the Animal Health Law (Regulation (EU) No 2016/429): antimicrobial-resistant Escherichia coli in dogs and cats, horses, swine, poultry, cattle, sheep and goats. EFSA J, 20(5), e07311. https://doi.org/10.2903/j.efsa.2022.7311

Publication

ISSN: 1831-4732
NlmUniqueID: 101642076
Country: United States
Language: English
Volume: 20
Issue: 5
Pages: e07311
PII: e07311

Researcher Affiliations

Nielsen, Søren Saxmose
    Bicout, Dominique Joseph
      Calistri, Paolo
        Canali, Elisabetta
          Drewe, Julian Ashley
            Garin-Bastuji, Bruno
              Gonzales Rojas, José Luis
                Gortázar, Christian
                  Herskin, Mette
                    Michel, Virginie
                      Miranda Chueca, Miguel Ángel
                        Padalino, Barbara
                          Pasquali, Paolo
                            Roberts, Helen Clare
                              Spoolder, Hans
                                Ståhl, Karl
                                  Velarde, Antonio
                                    Viltrop, Arvo
                                      Winckler, Christoph
                                        Baldinelli, Francesca
                                          Broglia, Alessandro
                                            Kohnle, Lisa
                                              Alvarez, Julio

                                                References

                                                This article includes 180 references
                                                1. Abbas G, Khan I, Mohsin M, Sajjad-Ur-Rahman, Younas T, Ali S. High rates of CTX-M group-1 extended-spectrum β-lactamases producing Escherichia coli from pets and their owners in Faisalabad, Pakistan.. Infect Drug Resist 2019;12:571-578.
                                                  doi: 10.2147/IDR.S189884pmc: PMC6411320pubmed: 30881062google scholar: lookup
                                                2. Acres SD. Enterotoxigenic Escherichia coli infections in newborn calves: a review.. J Dairy Sci 1985 Jan;68(1):229-56.
                                                3. Aslantaş Ö, Yilmaz EŞ. Prevalence and molecular characterization of extended-spectrum β-lactamase (ESBL) and plasmidic AmpC β-lactamase (pAmpC) producing Escherichia coli in dogs.. J Vet Med Sci 2017 Jun 16;79(6):1024-1030.
                                                  doi: 10.1292/jvms.16-0432pmc: PMC5487777pubmed: 28450661google scholar: lookup
                                                4. Astorga F, Navarrete-Talloni MJ, Miró MP, Bravo V, Toro M, Blondel CJ, Hervé-Claude LP. Antimicrobial resistance in E. coli isolated from dairy calves and bedding material.. Heliyon 2019 Nov;5(11):e02773.
                                                5. Baede VO, Wagenaar JA, Broens EM, Duim B, Dohmen W, Nijsse R, Timmerman AJ, Hordijk J. Longitudinal study of extended-spectrum-β-lactamase- and AmpC-producing Enterobacteriaceae in household dogs.. Antimicrob Agents Chemother 2015;59(6):3117-24.
                                                  doi: 10.1128/AAC.04576-14pmc: PMC4432141pubmed: 25779568google scholar: lookup
                                                6. Baraitareanu S, Vidu L. Dairy farms biosecurity to protect against infectious diseases and antibiotics overuse. .
                                                  doi: 10.5772/intechopen.93200google scholar: lookup
                                                7. Bartels CJ, Holzhauer M, Jorritsma R, Swart WA, Lam TJ. Prevalence, prediction and risk factors of enteropathogens in normal and non-normal faeces of young Dutch dairy calves.. Prev Vet Med 2010 Feb 1;93(2-3):162-9.
                                                8. Bashahun GM, Amina A. Colibacillosis in calves: a review of literature. Journal of Animal Science and Veterinary Medicine 2, 62–71.
                                                  doi: 10.31248/jasvm2017.041google scholar: lookup
                                                9. Becker E, Projahn M, Burow E, Käsbohrer A. Are There Effective Intervention Measures in Broiler Production against the ESBL/AmpC Producer Escherichia coli?. Pathogens 2021 May 15;10(5).
                                                  doi: 10.3390/pathogens10050608pmc: PMC8156222pubmed: 34063430google scholar: lookup
                                                10. Bélanger L, Garenaux A, Harel J, Boulianne M, Nadeau E, Dozois CM. Escherichia coli from animal reservoirs as a potential source of human extraintestinal pathogenic E. coli.. FEMS Immunol Med Microbiol 2011 Jun;62(1):1-10.
                                                11. Benagli C, Rossi V, Dolina M, Tonolla M, Petrini O. Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the identification of clinically relevant bacteria.. PLoS One 2011 Jan 25;6(1):e16424.
                                                12. Bennett R, IJpelaar J. Updated estimates of the costs associated with thirty four endemic livestock diseases in great britain: a note. Journal of Agricultural Economics 56, 135–144.
                                                13. Berchtold J. Treatment of calf diarrhea: intravenous fluid therapy.. Vet Clin North Am Food Anim Pract 2009 Mar;25(1):73-99, vi.
                                                  pmc: PMC7126998pubmed: 19174284doi: 10.1016/j.cvfa.2008.10.001google scholar: lookup
                                                14. Besser TE, Gay CC. Septicemic colibacillosis and failure of passive transfer of colostral immunoglobulin in calves.. Vet Clin North Am Food Anim Pract 1985 Nov;1(3):445-59.
                                                  doi: 10.1016/S0749-0720(15)31295-0pubmed: 3907781google scholar: lookup
                                                15. Botrel MA, Haenni M, Morignat E, Sulpice P, Madec JY, Calavas D. Distribution and antimicrobial resistance of clinical and subclinical mastitis pathogens in dairy cows in Rhône-Alpes, France.. Foodborne Pathog Dis 2010 May;7(5):479-87.
                                                  doi: 10.1089/fpd.2009.0425pubmed: 19919286google scholar: lookup
                                                16. Bradley AJ, Leach KA, Breen JE, Green LE, Green MJ. Survey of the incidence and aetiology of mastitis on dairy farms in England and Wales.. Vet Rec 2007 Feb 24;160(8):253-7.
                                                  doi: 10.1136/vr.160.8.253pubmed: 17322356google scholar: lookup
                                                17. Brilhante M, Menezes J, Belas A, Feudi C, Schwarz S, Pomba C, Perreten V. OXA-181-Producing Extraintestinal Pathogenic Escherichia coli Sequence Type 410 Isolated from a Dog in Portugal.. Antimicrob Agents Chemother 2020 Mar 24;64(4).
                                                  doi: 10.1128/AAC.02298-19pmc: PMC7179305pubmed: 31964797google scholar: lookup
                                                18. Brooks JW, Roberts EL, Kocher K, Kariyawasam S, DebRoy C. Fatal pneumonia caused by Extraintestinal Pathogenic Escherichia coli (ExPEC) in a juvenile cat recovered from an animal hoarding incident.. Vet Microbiol 2013 Dec 27;167(3-4):704-7.
                                                  doi: 10.1016/j.vetmic.2013.08.015pubmed: 24041770google scholar: lookup
                                                19. nCABIn. Invasive Species Compendium. .
                                                20. Carvalho AC, Barbosa AV, Arais LR, Ribeiro PF, Carneiro VC, Cerqueira AM. Resistance patterns, ESBL genes, and genetic relatedness of Escherichia coli from dogs and owners.. Braz J Microbiol 2016 Jan-Mar;47(1):150-8.
                                                  doi: 10.1016/j.bjm.2015.11.005pmc: PMC4822764pubmed: 26887238google scholar: lookup
                                                21. Carvallo FR, Debroy C, Baeza E, Hinckley L, Gilbert K, Choi SJ, Risatti G, Smyth JA. Necrotizing pneumonia and pleuritis associated with extraintestinal pathogenic Escherichia coli in a tiger (Panthera tigris) cub.. J Vet Diagn Invest 2010 Jan;22(1):136-40.
                                                  doi: 10.1177/104063871002200130pubmed: 20093704google scholar: lookup
                                                22. Cassini A, Högberg LD, Plachouras D, Quattrocchi A, Hoxha A, Simonsen GS, Colomb-Cotinat M, Kretzschmar ME, Devleesschauwer B, Cecchini M, Ouakrim DA, Oliveira TC, Struelens MJ, Suetens C, Monnet DL. Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis.. Lancet Infect Dis 2019 Jan;19(1):56-66.
                                                23. Cheney TE, Smith RP, Hutchinson JP, Brunton LA, Pritchard G, Teale CJ. Cross-sectional survey of antibiotic resistance in Escherichia coli isolated from diseased farm livestock in England and Wales.. Epidemiol Infect 2015 Sep;143(12):2653-9.
                                                  doi: 10.1017/S0950268814003963pmc: PMC9151016pubmed: 25613078google scholar: lookup
                                                24. Cho YI, Yoon KJ. An overview of calf diarrhea - infectious etiology, diagnosis, and intervention.. J Vet Sci 2014;15(1):1-17.
                                                  doi: 10.4142/jvs.2014.15.1.1pmc: PMC3973752pubmed: 24378583google scholar: lookup
                                                25. Chui H, Chan M, Hernandez D, Chong P, McCorrister S, Robinson A, Walker M, Peterson LA, Ratnam S, Haldane DJ, Bekal S, Wylie J, Chui L, Westmacott G, Xu B, Drebot M, Nadon C, Knox JD, Wang G, Cheng K. Rapid, Sensitive, and Specific Escherichia coli H Antigen Typing by Matrix-Assisted Laser Desorption Ionization-Time of Flight-Based Peptide Mass Fingerprinting.. J Clin Microbiol 2015 Aug;53(8):2480-5.
                                                  doi: 10.1128/JCM.00593-15pmc: PMC4508425pubmed: 26019207google scholar: lookup
                                                26. Cobirka M, Tancin V, Slama P. Epidemiology and Classification of Mastitis.. Animals (Basel) 2020 Nov 26;10(12).
                                                  doi: 10.3390/ani10122212pmc: PMC7760962pubmed: 33255907google scholar: lookup
                                                27. Cunha MPV, Saidenberg AB, Moreno AM, Ferreira AJP, Vieira MAM, Gomes TAT, Knöbl T. Pandemic extra-intestinal pathogenic Escherichia coli (ExPEC) clonal group O6-B2-ST73 as a cause of avian colibacillosis in Brazil.. PLoS One 2017;12(6):e0178970.
                                                28. Cusack TP, Ashley EA, Ling CL, Rattanavong S, Roberts T, Turner P, Wangrangsimakul T, Dance DAB. Impact of CLSI and EUCAST breakpoint discrepancies on reporting of antimicrobial susceptibility and AMR surveillance.. Clin Microbiol Infect 2019 Jul;25(7):910-911.
                                                  doi: 10.1016/j.cmi.2019.03.007pmc: PMC6587648pubmed: 30910717google scholar: lookup
                                                29. Damborg P, Marskar P, Baptiste KE, Guardabassi L. Faecal shedding of CTX-M-producing Escherichia coli in horses receiving broad-spectrum antimicrobial prophylaxis after hospital admission.. Vet Microbiol 2012 Jan 27;154(3-4):298-304.
                                                  doi: 10.1016/j.vetmic.2011.07.005pubmed: 21820821google scholar: lookup
                                                30. De Briyne N, Atkinson J, Pokludová L, Borriello SP. Antibiotics used most commonly to treat animals in Europe.. Vet Rec 2014 Oct 4;175(13):325.
                                                  doi: 10.1136/vr.102462pmc: PMC4215272pubmed: 24899065google scholar: lookup
                                                31. Dhillon AS, Jack OK. Two outbreaks of colibacillosis in commercial caged layers.. Avian Dis 1996 Jul-Sep;40(3):742-6.
                                                  pubmed: 8883810
                                                32. Dolejska M, Duskova E, Rybarikova J, Janoszowska D, Roubalova E, Dibdakova K, Maceckova G, Kohoutova L, Literak I, Smola J, Cizek A. Plasmids carrying blaCTX-M-1 and qnr genes in Escherichia coli isolates from an equine clinic and a horseback riding centre.. J Antimicrob Chemother 2011 Apr;66(4):757-64.
                                                  doi: 10.1093/jac/dkq500pubmed: 21393204google scholar: lookup
                                                33. Dorsch R, Teichmann-Knorrn S, Sjetne Lund H. Urinary tract infection and subclinical bacteriuria in cats: A clinical update.. J Feline Med Surg 2019 Nov;21(11):1023-1038.
                                                  pmc: PMC6826873pubmed: 31601143doi: 10.1177/1098612x19880435google scholar: lookup
                                                34. Drazenovich N, Ling GV, Foley J. Molecular investigation of Escherichia coli strains associated with apparently persistent urinary tract infection in dogs.. J Vet Intern Med 2004 May-Jun;18(3):301-6.
                                                35. nDrugs.comn. Enviracor J‐5 (Canada). .
                                                36. nDrugs.comn. ScourGuard 4KC (Canada). .
                                                37. Dubreuil JD. Enterotoxigenic Escherichia coli and probiotics in swine: what the bleep do we know?. Biosci Microbiota Food Health 2017;36(3):75-90.
                                                  doi: 10.12938/bmfh.16-030pmc: PMC5510153pubmed: 28785529google scholar: lookup
                                                38. Dubreuil JD, Isaacson RE, Schifferli DM. Animal Enterotoxigenic Escherichia coli.. EcoSal Plus 2016 Oct;7(1).
                                                39. nECDC (European Centre for Disease Prevention and Control)n. Surveillance Atlas of Infectious Diseases. .
                                                40. Aerts M, Battisti A, Hendriksen R, Kempf I, Teale C, Tenhagen BA, Veldman K, Wasyl D, Guerra B, Liébana E, Thomas-López D, Belœil PA. Technical specifications on harmonised monitoring of antimicrobial resistance in zoonotic and indicator bacteria from food-producing animals and food.. EFSA J 2019 Jun;17(6):e05709.
                                                  doi: 10.2903/j.efsa.2019.5709pmc: PMC7009308pubmed: 32626332google scholar: lookup
                                                41. . The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2015.. EFSA J 2017 Feb;15(2):e04694.
                                                  doi: 10.2903/j.efsa.2017.4694pmc: PMC7009883pubmed: 32625402google scholar: lookup
                                                42. . The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2018/2019.. EFSA J 2021 Apr;19(4):e06490.
                                                  doi: 10.2903/j.efsa.2021.6490pmc: PMC8040295pubmed: 33868492google scholar: lookup
                                                43. More S, Bøtner A, Butterworth A, Calistri P, Depner K, Edwards S, Garin-Bastuji B, Good M, Gortázar Schmidt C, Michel V, Miranda MA, Nielsen SS, Raj M, Sihvonen L, Spoolder H, Stegeman JA, Thulke HH, Velarde A, Willeberg P, Winckler C, Baldinelli F, Broglia A, Candiani D, Gervelmeyer A, Zancanaro G, Kohnle L, Morgado J, Bicout D. Ad hoc method for the assessment on listing and categorisation of animal diseases within the framework of the Animal Health Law.. EFSA J 2017 Jul;15(7):e04783.
                                                  doi: 10.2903/j.efsa.2017.4783pmc: PMC7010140pubmed: 32625537google scholar: lookup
                                                44. Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Sihvonen LH, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Guardabassi L, Hilbert F, Mader R, Aznar I, Baldinelli F, Alvarez J. Assessment of animal diseases caused by bacteria resistant to antimicrobials: Dogs and cats.. EFSA J 2021 Jun;19(6):e06680.
                                                  doi: 10.2903/j.efsa.2021.6680pmc: PMC8237238pubmed: 34194578google scholar: lookup
                                                45. Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Sihvonen LH, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Dewulf J, Guardabassi L, Hilbert F, Mader R, Baldinelli F, Alvarez J. Assessment of animal diseases caused by bacteria resistant to antimicrobials: Horses.. EFSA J 2021 Dec;19(12):e07112.
                                                  doi: 10.2903/j.efsa.2021.7112pmc: PMC8703245pubmed: 34987627google scholar: lookup
                                                46. Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Sihvonen LH, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Dewulf J, Guardabassi L, Hilbert F, Mader R, Baldinelli F, Alvarez J. Assessment of animal diseases caused by bacteria resistant to antimicrobials: Swine.. EFSA J 2021 Dec;19(12):e07113.
                                                  doi: 10.2903/j.efsa.2021.7113pmc: PMC8703240pubmed: 34987628google scholar: lookup
                                                47. Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Dewulf J, Guardabassi L, Hilbert F, Mader R, Baldinelli F, Alvarez J. Assessment of animal diseases caused by bacteria resistant to antimicrobials: Poultry.. EFSA J 2021 Dec;19(12):e07114.
                                                  doi: 10.2903/j.efsa.2021.7114pmc: PMC8703241pubmed: 34987629google scholar: lookup
                                                48. Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Dewulf J, Guardabassi L, Hilbert F, Mader R, Baldinelli F, Alvarez J. Assessment of animal diseases caused by bacteria resistant to antimicrobials: cattle.. EFSA J 2021 Dec;19(12):e06955.
                                                  doi: 10.2903/j.efsa.2021.6955pmc: PMC8662806pubmed: 34938371google scholar: lookup
                                                49. Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Dewulf J, Guardabassi L, Hilbert F, Mader R, Baldinelli F, Alvarez J. Assessment of animal diseases caused by bacteria resistant to antimicrobials: sheep and goats.. EFSA J 2021 Dec;19(12):e06956.
                                                  doi: 10.2903/j.efsa.2021.6956pmc: PMC8649876pubmed: 34934457google scholar: lookup
                                                50. Nielsen SS, Bicout DJ, Calistri P, Canali E, Drewe JA, Garin-Bastuji B, Gonzales Rojas JL, Gortazar Schmidt C, Herskin M, Michel V, Miranda Chueca MA, Padalino B, Pasquali P, Roberts HC, Sihvonen LH, Spoolder H, Stahl K, Velarde A, Viltrop A, Winckler C, Dewulf J, Guardabassi L, Hilbert F, Mader R, Smith P, Aznar I, Baldinelli F, Alvarez J. Ad hoc method for the assessment of animal diseases caused by bacteria resistant to antimicrobials.. EFSA J 2021 Jun;19(6):e06645.
                                                  doi: 10.2903/j.efsa.2021.6645pmc: PMC8173446pubmed: 34122661google scholar: lookup
                                                51. Benford D, Halldorsson T, Jeger MJ, Knutsen HK, More S, Naegeli H, Noteborn H, Ockleford C, Ricci A, Rychen G, Schlatter JR, Silano V, Solecki R, Turck D, Younes M, Craig P, Hart A, Von Goetz N, Koutsoumanis K, Mortensen A, Ossendorp B, Martino L, Merten C, Mosbach-Schulz O, Hardy A. Guidance on Uncertainty Analysis in Scientific Assessments.. EFSA J 2018 Jan;16(1):e05123.
                                                  doi: 10.2903/j.efsa.2018.5123pmc: PMC7009727pubmed: 32625671google scholar: lookup
                                                52. Murphy D, Ricci A, Auce Z, Beechinor JG, Bergendahl H, Breathnach R, Bureš J, Duarte Da Silva JP, Hederová J, Hekman P, Ibrahim C, Kozhuharov E, Kulcsár G, Lander Persson E, Lenhardsson JM, Mačiulskis P, Malemis I, Markus-Cizelj L, Michaelidou-Patsia A, Nevalainen M, Pasquali P, Rouby JC, Schefferlie J, Schlumbohm W, Schmit M, Spiteri S, Srčič S, Taban L, Tiirats T, Urbain B, Vestergaard EM, Wachnik-Święcicka A, Weeks J, Zemann B, Allende A, Bolton D, Chemaly M, Fernandez Escamez PS, Girones R, Herman L, Koutsoumanis K, Lindqvist R, Nørrung B, Robertson L, Ru G, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Wahlström H, Baptiste K, Catry B, Cocconcelli PS, Davies R, Ducrot C, Friis C, Jungersen G, More S, Muñoz Madero C, Sanders P, Bos M, Kunsagi Z, Torren Edo J, Brozzi R, Candiani D, Guerra B, Liebana E, Stella P, Threlfall J, Jukes H. EMA and EFSA Joint Scientific Opinion on measures to reduce the need to use antimicrobial agents in animal husbandry in the European Union, and the resulting impacts on food safety (RONAFA).. EFSA J 2017 Jan;15(1):e04666.
                                                  doi: 10.2903/j.efsa.2017.4666pmc: PMC7010070pubmed: 32625259google scholar: lookup
                                                53. nEMA (European Medicines Agency)n. Startvac. .
                                                54. nEMA (European Medicines Agency)n. Categorisation of antibiotics in the European Union. .
                                                55. nEMA (European Medicines Agency)n. Porcilis ColiClos. .
                                                56. nEMA (European Medicines Agency)n. Coliprotec F4/F18. .
                                                57. nEMA (European Medicines Agency)n. Enteroporc Coli. .
                                                58. nEMA (European Medicines Agency)n. Neocolipor. .
                                                59. nEMA (European Medicines Agency)n. Locatim (previously Serinucoli). .
                                                60. nEMA (European Medicines Agency)n. Poulvac E. coli. .
                                                61. Ewers C, Li G, Wilking H, Kiessling S, Alt K, Antáo EM, Laturnus C, Diehl I, Glodde S, Homeier T, Böhnke U, Steinrück H, Philipp HC, Wieler LH. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they?. Int J Med Microbiol 2007 Jun;297(3):163-76.
                                                  doi: 10.1016/j.ijmm.2007.01.003pubmed: 17374506google scholar: lookup
                                                62. Ewers C, Antão EM, Diehl I, Philipp HC, Wieler LH. Intestine and environment of the chicken as reservoirs for extraintestinal pathogenic Escherichia coli strains with zoonotic potential.. Appl Environ Microbiol 2009 Jan;75(1):184-92.
                                                  doi: 10.1128/AEM.01324-08pmc: PMC2612213pubmed: 18997030google scholar: lookup
                                                63. Ewers C, Bethe A, Semmler T, Guenther S, Wieler LH. Extended-spectrum β-lactamase-producing and AmpC-producing Escherichia coli from livestock and companion animals, and their putative impact on public health: a global perspective.. Clin Microbiol Infect 2012 Jul;18(7):646-55.
                                                64. Fairbrother JM, Nadeau É. Colibacillosis. Diseases of Swine 807–834.
                                                65. Ferriol-González C, Domingo-Calap P. Phage Therapy in Livestock and Companion Animals.. Antibiotics (Basel) 2021 May 11;10(5).
                                                  doi: 10.3390/antibiotics10050559pmc: PMC8150778pubmed: 34064754google scholar: lookup
                                                66. Flint KP. The long-term survival of Escherichia coli in river water.. J Appl Bacteriol 1987 Sep;63(3):261-70.
                                                67. Florio W, Baldeschi L, Rizzato C, Tavanti A, Ghelardi E, Lupetti A. Detection of Antibiotic-Resistance by MALDI-TOF Mass Spectrometry: An Expanding Area.. Front Cell Infect Microbiol 2020;10:572909.
                                                  doi: 10.3389/fcimb.2020.572909pmc: PMC7686347pubmed: 33262954google scholar: lookup
                                                68. Freitag T, Squires RA, Schmid J, Elliott J, Rycroft AN. Antibiotic sensitivity profiles do not reliably distinguish relapsing or persisting infections from reinfections in cats with chronic renal failure and multiple diagnoses of Escherichia coli urinary tract infection.. J Vet Intern Med 2006 Mar-Apr;20(2):245-9.
                                                69. García V, García-Meniño I, Mora A, Flament-Simon SC, Díaz-Jiménez D, Blanco JE, Alonso MP, Blanco J. Co-occurrence of mcr-1, mcr-4 and mcr-5 genes in multidrug-resistant ST10 Enterotoxigenic and Shiga toxin-producing Escherichia coli in Spain (2006-2017).. Int J Antimicrob Agents 2018 Jul;52(1):104-108.
                                                70. García-Meniño I, García V, Mora A, Díaz-Jiménez D, Flament-Simon SC, Alonso MP, Blanco JE, Blanco M, Blanco J. Swine Enteric Colibacillosis in Spain: Pathogenic Potential of mcr-1 ST10 and ST131 E. coli Isolates.. Front Microbiol 2018;9:2659.
                                                  doi: 10.3389/fmicb.2018.02659pmc: PMC6230658pubmed: 30455680google scholar: lookup
                                                71. GAY CC. ESCHERICHIA COLI AND NEONATAL DISEASE OF CALVES.. Bacteriol Rev 1965 Mar;29(1):75-101.
                                                  pmc: PMC441261pubmed: 14295986doi: 10.1128/br.29.1.75-101.1965google scholar: lookup
                                                72. . Estimates of the global, regional, and national morbidity, mortality, and aetiologies of diarrhoea in 195 countries: a systematic analysis for the Global Burden of Disease Study 2016.. Lancet Infect Dis 2018 Nov;18(11):1211-1228.
                                                73. Zhu Ge X, Jiang J, Pan Z, Hu L, Wang S, Wang H, Leung FC, Dai J, Fan H. Comparative genomic analysis shows that avian pathogenic Escherichia coli isolate IMT5155 (O2:K1:H5; ST complex 95, ST140) shares close relationship with ST95 APEC O1:K1 and human ExPEC O18:K1 strains.. PLoS One 2014;9(11):e112048.
                                                74. nGERM‐Vetn. Bericht zur Resistenzmonitoringstudie 2018 – Resistenzsituation bei klinisch wichtigen tierpathogenen Bakterien, Berlin, Germany. .
                                                75. Ghanbarpour R, Aflatoonian MR, Askari A, Abiri Z, Naderi Z, Bagheri M, Jajarmi M, Shobeiri S, Molaei R, Askari N. Domestic and game pigeons as reservoirs for Escherichia coli harbouring antimicrobial resistance genes.. J Glob Antimicrob Resist 2020 Sep;22:571-577.
                                                  doi: 10.1016/j.jgar.2020.02.015pubmed: 32097757google scholar: lookup
                                                76. Greiner M, Wolf G, Hartmann K. A retrospective study of the clinical presentation of 140 dogs and 39 cats with bacteraemia.. J Small Anim Pract 2008 Aug;49(8):378-83.
                                                77. Guabiraba R, Schouler C. Avian colibacillosis: still many black holes.. FEMS Microbiol Lett 2015 Aug;362(15):fnv118.
                                                  doi: 10.1093/femsle/fnv118pubmed: 26204893google scholar: lookup
                                                78. Hagman R. Pyometra in Small Animals.. Vet Clin North Am Small Anim Pract 2018 Jul;48(4):639-661.
                                                  doi: 10.1016/j.cvsm.2018.03.001pubmed: 29933767google scholar: lookup
                                                79. Hannan TJ, Hunstad DA. A Murine Model for Escherichia coli Urinary Tract Infection.. Methods Mol Biol 2016;1333:159-75.
                                                80. Harada K, Okada E, Shimizu T, Kataoka Y, Sawada T, Takahashi T. Antimicrobial resistance, virulence profiles, and phylogenetic groups of fecal Escherichia coli isolates: a comparative analysis between dogs and their owners in Japan.. Comp Immunol Microbiol Infect Dis 2012 Mar;35(2):139-44.
                                                  doi: 10.1016/j.cimid.2011.12.005pubmed: 22252047google scholar: lookup
                                                81. He W, Ma S, Lei L, He J, Li X, Tao J, Wang X, Song S, Wang Y, Wang Y, Shen J, Cai C, Wu C. Prevalence, etiology, and economic impact of clinical mastitis on large dairy farms in China.. Vet Microbiol 2020 Mar;242:108570.
                                                  doi: 10.1016/j.vetmic.2019.108570pubmed: 32122584google scholar: lookup
                                                82. Heikkilä AM, Liski E, Pyörälä S, Taponen S. Pathogen-specific production losses in bovine mastitis.. J Dairy Sci 2018 Oct;101(10):9493-9504.
                                                  doi: 10.3168/jds.2018-14824pubmed: 30122416google scholar: lookup
                                                83. Hilty M, Betsch BY, Bögli-Stuber K, Heiniger N, Stadler M, Küffer M, Kronenberg A, Rohrer C, Aebi S, Endimiani A, Droz S, Mühlemann K. Transmission dynamics of extended-spectrum β-lactamase-producing Enterobacteriaceae in the tertiary care hospital and the household setting.. Clin Infect Dis 2012 Oct;55(7):967-75.
                                                  doi: 10.1093/cid/cis581pmc: PMC3436924pubmed: 22718774google scholar: lookup
                                                84. Hogeveen H, Huijps K, Lam TJ. Economic aspects of mastitis: new developments.. N Z Vet J 2011 Jan;59(1):16-23.
                                                  doi: 10.1080/00480169.2011.547165pubmed: 21328153google scholar: lookup
                                                85. Holmøy IH, Waage S, Granquist EG, L'Abée-Lund TM, Ersdal C, Hektoen L, Sørby R. Early neonatal lamb mortality: postmortem findings.. Animal 2017 Feb;11(2):295-305.
                                                  doi: 10.1017/S175173111600152Xpubmed: 27452785google scholar: lookup
                                                86. Ibrahim RA, Cryer TL, Lafi SQ, Basha EA, Good L, Tarazi YH. Identification of Escherichia coli from broiler chickens in Jordan, their antimicrobial resistance, gene characterization and the associated risk factors.. BMC Vet Res 2019 May 22;15(1):159.
                                                  doi: 10.1186/s12917-019-1901-1pmc: PMC6530146pubmed: 31118039google scholar: lookup
                                                87. Isgren CM, Williams NJ, Fletcher OD, Timofte D, Newton RJ, Maddox TW, Clegg PD, Pinchbeck GL. Antimicrobial resistance in clinical bacterial isolates from horses in the UK.. Equine Vet J 2022 Mar;54(2):390-414.
                                                  doi: 10.1111/evj.13437pubmed: 33566383google scholar: lookup
                                                88. Jang J, Hur HG, Sadowsky MJ, Byappanahalli MN, Yan T, Ishii S. Environmental Escherichia coli: ecology and public health implications-a review.. J Appl Microbiol 2017 Sep;123(3):570-581.
                                                  doi: 10.1111/jam.13468pubmed: 28383815google scholar: lookup
                                                89. Johnson JR, Clabots C, Kuskowski MA. Multiple-host sharing, long-term persistence, and virulence of Escherichia coli clones from human and animal household members.. J Clin Microbiol 2008 Dec;46(12):4078-82.
                                                  doi: 10.1128/JCM.00980-08pmc: PMC2593269pubmed: 18945846google scholar: lookup
                                                90. Johnson TJ, Kariyawasam S, Wannemuehler Y, Mangiamele P, Johnson SJ, Doetkott C, Skyberg JA, Lynne AM, Johnson JR, Nolan LK. The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes.. J Bacteriol 2007 Apr;189(8):3228-36.
                                                  doi: 10.1128/JB.01726-06pmc: PMC1855855pubmed: 17293413google scholar: lookup
                                                91. de Jong A, Garch FE, Simjee S, Moyaert H, Rose M, Youala M, Siegwart E. Monitoring of antimicrobial susceptibility of udder pathogens recovered from cases of clinical mastitis in dairy cows across Europe: VetPath results.. Vet Microbiol 2018 Jan;213:73-81.
                                                  doi: 10.1016/j.vetmic.2017.11.021pubmed: 29292007google scholar: lookup
                                                92. de Jong A, Youala M, El Garch F, Simjee S, Rose M, Morrissey I, Moyaert H. Antimicrobial susceptibility monitoring of canine and feline skin and ear pathogens isolated from European veterinary clinics: results of the ComPath Surveillance programme.. Vet Dermatol 2020 Dec;31(6):431-e114.
                                                  doi: 10.1111/vde.12886pubmed: 32924232google scholar: lookup
                                                93. Jørgensen SL, Stegger M, Kudirkiene E, Lilje B, Poulsen LL, Ronco T, Pires Dos Santos T, Kiil K, Bisgaard M, Pedersen K, Nolan LK, Price LB, Olsen RH, Andersen PS, Christensen H. Diversity and Population Overlap between Avian and Human Escherichia coli Belonging to Sequence Type 95.. mSphere 2019 Jan 16;4(1).
                                                  doi: 10.1128/mSphere.00333-18pmc: PMC6336079pubmed: 30651401google scholar: lookup
                                                94. Kampf G. Antiseptic Stewardship: Biocide Resistance and Clinical Implications. 694.
                                                95. Kaspar U, von Lützau K, Schlattmann A, Rösler U, Köck R, Becker K. Zoonotic multidrug-resistant microorganisms among non-hospitalized horses from Germany.. One Health 2019 Jun;7:100091.
                                                96. Kathayat D, Lokesh D, Ranjit S, Rajashekara G. Avian Pathogenic Escherichia coli (APEC): An Overview of Virulence and Pathogenesis Factors, Zoonotic Potential, and Control Strategies.. Pathogens 2021 Apr 12;10(4).
                                                  doi: 10.3390/pathogens10040467pmc: PMC8069529pubmed: 33921518google scholar: lookup
                                                97. Kondratyeva K, Salmon-Divon M, Navon-Venezia S. Meta-analysis of Pandemic Escherichia coli ST131 Plasmidome Proves Restricted Plasmid-clade Associations.. Sci Rep 2020 Jan 8;10(1):36.
                                                  doi: 10.1038/s41598-019-56763-7pmc: PMC6949217pubmed: 31913346google scholar: lookup
                                                98. Landman WJ, van Eck JH. The incidence and economic impact of the Escherichia coli peritonitis syndrome in Dutch poultry farming.. Avian Pathol 2015 Oct;44(5):370-8.
                                                  pubmed: 26083823doi: 10.1080/03079457.2015.1060584google scholar: lookup
                                                99. Lagerstrom KM, Hadly EA. The under-investigated wild side of Escherichia coli: genetic diversity, pathogenicity and antimicrobial resistance in wild animals.. Proc Biol Sci 2021 Apr 14;288(1948):20210399.
                                                  doi: 10.1098/rspb.2021.0399pmc: PMC8059539pubmed: 33849316google scholar: lookup
                                                100. Laird TJ, Abraham S, Jordan D, Pluske JR, Hampson DJ, Trott DJ, O'Dea M. Porcine enterotoxigenic Escherichia coli: Antimicrobial resistance and development of microbial-based alternative control strategies.. Vet Microbiol 2021 Jul;258:109117.
                                                  doi: 10.1016/j.vetmic.2021.109117pubmed: 34049073google scholar: lookup
                                                101. Larsson DGJ, Flach CF. Antibiotic resistance in the environment.. Nat Rev Microbiol 2022 May;20(5):257-269.
                                                  doi: 10.1038/s41579-021-00649-xpmc: PMC8567979pubmed: 34737424google scholar: lookup
                                                102. Lengliz S, Benlabidi S, Raddaoui A, Cheriet S, Ben Chehida N, Najar T, Abbassi MS. High occurrence of carbapenem-resistant Escherichia coli isolates from healthy rabbits (Oryctolagus cuniculus): first report of bla(IMI) and bla(VIM) type genes from livestock in Tunisia.. Lett Appl Microbiol 2021 Dec;73(6):708-717.
                                                  doi: 10.1111/lam.13558pubmed: 34487562google scholar: lookup
                                                103. Liu CM, Stegger M, Aziz M, Johnson TJ, Waits K, Nordstrom L, Gauld L, Weaver B, Rolland D, Statham S, Horwinski J, Sariya S, Davis GS, Sokurenko E, Keim P, Johnson JR, Price LB. Escherichia coli ST131-H22 as a Foodborne Uropathogen.. mBio 2018 Aug 28;9(4).
                                                  pmc: PMC6113624pubmed: 30154256doi: 10.1128/mbio.00470-18google scholar: lookup
                                                104. Li X, Zhang Z, Chang X, Wang X, Hu J, Lin Q, Jia Y, Yang X, Wang X. Disruption of blood-brain barrier by an Escherichia coli isolated from canine septicemia and meningoencephalitis.. Comp Immunol Microbiol Infect Dis 2019 Apr;63:44-50.
                                                  doi: 10.1016/j.cimid.2019.01.002pubmed: 30961817google scholar: lookup
                                                105. Loayza F, Graham JP, Trueba G. Factors Obscuring the Role of E. coli from Domestic Animals in the Global Antimicrobial Resistance Crisis: An Evidence-Based Review.. Int J Environ Res Public Health 2020 Apr 28;17(9).
                                                  doi: 10.3390/ijerph17093061pmc: PMC7246672pubmed: 32354184google scholar: lookup
                                                106. Lupo A, Haenni M, Saras E, Gradin J, Madec JY, Börjesson S. Is bla(CTX-M-1) Riding the Same Plasmid Among Horses in Sweden and France?. Microb Drug Resist 2018 May 24;.
                                                  doi: 10.1089/mdr.2017.0412pubmed: 29792781google scholar: lookup
                                                107. Luppi A. Swine enteric colibacillosis: diagnosis, therapy and antimicrobial resistance.. Porcine Health Manag 2017;3:16.
                                                  doi: 10.1186/s40813-017-0063-4pmc: PMC5547460pubmed: 28794894google scholar: lookup
                                                108. Ma F, Xu S, Tang Z, Li Z, Zhang L. Use of antimicrobials in food animals and impact of transmission of antimicrobial resistance on humans. Biosafety and Health 3, 32–38.
                                                109. MacKinnon MC, Sargeant JM, Pearl DL, Reid-Smith RJ, Carson CA, Parmley EJ, McEwen SA. Evaluation of the health and healthcare system burden due to antimicrobial-resistant Escherichia coli infections in humans: a systematic review and meta-analysis.. Antimicrob Resist Infect Control 2020 Dec 10;9(1):200.
                                                  doi: 10.1186/s13756-020-00863-xpmc: PMC7726913pubmed: 33303015google scholar: lookup
                                                110. Maddox TW, Clegg PD, Williams NJ, Pinchbeck GL. Antimicrobial resistance in bacteria from horses: Epidemiology of antimicrobial resistance.. Equine Vet J 2015 Nov;47(6):756-65.
                                                  doi: 10.1111/evj.12471pubmed: 26084443google scholar: lookup
                                                111. Madec JY, Haenni M. Antimicrobial resistance plasmid reservoir in food and food-producing animals.. Plasmid 2018 Sep;99:72-81.
                                                  doi: 10.1016/j.plasmid.2018.09.001pubmed: 30194944google scholar: lookup
                                                112. Madigan T, Johnson JR, Clabots C, Johnston BD, Porter SB, Slater BS, Banerjee R. Extensive Household Outbreak of Urinary Tract Infection and Intestinal Colonization due to Extended-Spectrum β-Lactamase-Producing Escherichia coli Sequence Type 131.. Clin Infect Dis 2015 Jul 1;61(1):e5-12.
                                                  doi: 10.1093/cid/civ273pmc: PMC4542914pubmed: 25828998google scholar: lookup
                                                113. Manges AR, Johnson JR. Food-borne origins of Escherichia coli causing extraintestinal infections.. Clin Infect Dis 2012 Sep;55(5):712-9.
                                                  doi: 10.1093/cid/cis502pubmed: 22615330google scholar: lookup
                                                114. Mariano V, Nardi A, Moruzzo R, di Iacovo FP, Rossignoli CM. In‐farm cost of an outbreak of diarrhoea in lambs. Small Ruminant Research 166, 17–21.
                                                115. Marques C, Belas A, Franco A, Aboim C, Gama LT, Pomba C. Increase in antimicrobial resistance and emergence of major international high-risk clonal lineages in dogs and cats with urinary tract infection: 16 year retrospective study.. J Antimicrob Chemother 2018 Feb 1;73(2):377-384.
                                                  doi: 10.1093/jac/dkx401pmc: PMC5890753pubmed: 29136156google scholar: lookup
                                                116. Mattioni Marchetti V, Bitar I, Mercato A, Nucleo E, Marchesini F, Mancinelli M, Prati P, Scarsi GS, Hrabak J, Pagani L, Fabbi M, Migliavacca R. Deadly Puppy Infection Caused by an MDR Escherichia coli O39 bla (CTX-M-15), bla (CMY-2), bla (DHA-1), and aac(6)-Ib-cr - Positive in a Breeding Kennel in Central Italy.. Front Microbiol 2020;11:584.
                                                  pmc: PMC7174561pubmed: 32351465doi: 10.3389/fmicb.2020.00584google scholar: lookup
                                                117. Mellata M. Human and avian extraintestinal pathogenic Escherichia coli: infections, zoonotic risks, and antibiotic resistance trends.. Foodborne Pathog Dis 2013 Nov;10(11):916-32.
                                                  doi: 10.1089/fpd.2013.1533pmc: PMC3865812pubmed: 23962019google scholar: lookup
                                                118. Mir RA, Weppelmann TA, Teng L, Kirpich A, Elzo MA, Driver JD, Jeong KC. Colonization Dynamics of Cefotaxime Resistant Bacteria in Beef Cattle Raised Without Cephalosporin Antibiotics.. Front Microbiol 2018;9:500.
                                                  doi: 10.3389/fmicb.2018.00500pmc: PMC5871660pubmed: 29619015google scholar: lookup
                                                119. Monger XC, Gilbert AA, Saucier L, Vincent AT. Antibiotic Resistance: From Pig to Meat.. Antibiotics (Basel) 2021 Oct 5;10(10).
                                                  doi: 10.3390/antibiotics10101209pmc: PMC8532907pubmed: 34680790google scholar: lookup
                                                120. Montealegre MC, Roy S, Böni F, Hossain MI, Navab-Daneshmand T, Caduff L, Faruque ASG, Islam MA, Julian TR. Risk Factors for Detection, Survival, and Growth of Antibiotic-Resistant and Pathogenic Escherichia coli in Household Soils in Rural Bangladesh.. Appl Environ Microbiol 2018 Dec 15;84(24).
                                                  doi: 10.1128/AEM.01978-18pmc: PMC6275341pubmed: 30315075google scholar: lookup
                                                121. Mora A, López C, Dabhi G, Blanco M, Blanco JE, Alonso MP, Herrera A, Mamani R, Bonacorsi S, Moulin-Schouleur M, Blanco J. Extraintestinal pathogenic Escherichia coli O1:K1:H7/NM from human and avian origin: detection of clonal groups B2 ST95 and D ST59 with different host distribution.. BMC Microbiol 2009 Jul 7;9:132.
                                                  doi: 10.1186/1471-2180-9-132pmc: PMC2713252pubmed: 19583828google scholar: lookup
                                                122. Muktar Y, Gezhagne M, Biruk T, Dinaol B. A review on major bacterial causes of calf diarrhea and its diagnostic method. Journal of Veterinary Medicine and Animal Health 7, 173–185.
                                                  doi: 10.5897/JVMAH2014.0351google scholar: lookup
                                                123. Najafi S, Rahimi M, Nikousefat Z. Extra-intestinal pathogenic Escherichia coli from human and avian origin: Detection of the most common virulence-encoding genes.. Vet Res Forum 2019 Winter;10(1):43-49.
                                                  doi: 10.30466/vrf.2019.34307pmc: PMC6522195pubmed: 31183015google scholar: lookup
                                                124. nNZVA (New Zealand Veterinary Association)n. Antibiotic judicious use guidelines for the New Zealand veterinary profession. .
                                                125. Nigg A, Brilhante M, Dazio V, Clément M, Collaud A, Gobeli Brawand S, Willi B, Endimiani A, Schuller S, Perreten V. Shedding of OXA-181 carbapenemase-producing Escherichia coli from companion animals after hospitalisation in Switzerland: an outbreak in 2018.. Euro Surveill 2019 Sep;24(39).
                                                126. Nittayasut N, Yindee J, Boonkham P, Yata T, Suanpairintr N, Chanchaithong P. Multiple and High-Risk Clones of Extended-Spectrum Cephalosporin-Resistant and bla(NDM-5)-Harbouring Uropathogenic Escherichia coli from Cats and Dogs in Thailand.. Antibiotics (Basel) 2021 Nov 10;10(11).
                                                  doi: 10.3390/antibiotics10111374pmc: PMC8614778pubmed: 34827312google scholar: lookup
                                                127. Nolan LK, Vaillancourt J‐P, Barbieri NL, Logue CM. Colibacillosis. Diseases of Poultry pp. 770–860.
                                                128. Nowakiewicz A, Zięba P, Gnat S, Trościańczyk A, Osińska M, Łagowski D, Kosior-Korzecka U, Puzio I. Bats as a reservoir of resistant Escherichia coli: A methodical view. Can we fully estimate the scale of resistance in the reservoirs of free-living animals?. Res Vet Sci 2020 Feb;128:49-58.
                                                  doi: 10.1016/j.rvsc.2019.10.017pubmed: 31710964google scholar: lookup
                                                129. Olsen RH, Frantzen C, Christensen H, Bisgaard M. An investigation on first-week mortality in layers.. Avian Dis 2012 Mar;56(1):51-7.
                                                  doi: 10.1637/9777-051011-Reg.1pubmed: 22545528google scholar: lookup
                                                130. Othman MA, Ezzat HM, Rizk DEE, Kamal AH, Al-Mahameed AE, Marwani AM, Bindyna KM, Salvatore S. Induction of bacterial cystitis in female rabbits by uropathogenic Escherichia coli and the differences between the bladder dome and trigone.. Ultrastruct Pathol 2021 May 4;45(3):159-166.
                                                  doi: 10.1080/01913123.2021.1920653pubmed: 34030600google scholar: lookup
                                                131. Pasolini MP, Prete CD, Fabbri S, Auletta L. Endometritis and Infertility in the Mare – The Challenge in Equine Breeding Industry–A Review. .
                                                132. nPelzer KD, Currin Nn. Zoonotic Diseases of Cattle. 400–460.
                                                133. Poirel L, Madec JY, Lupo A, Schink AK, Kieffer N, Nordmann P, Schwarz S. Antimicrobial Resistance in Escherichia coli.. Microbiol Spectr 2018 Jul;6(4).
                                                134. Radhouani H, Igrejas G, Gonçalves A, Pacheco R, Monteiro R, Sargo R, Brito F, Torres C, Poeta P. Antimicrobial resistance and virulence genes in Escherichia coli and enterococci from red foxes (Vulpes vulpes).. Anaerobe 2013 Oct;23:82-6.
                                                135. Ramchandani M, Manges AR, DebRoy C, Smith SP, Johnson JR, Riley LW. Possible animal origin of human-associated, multidrug-resistant, uropathogenic Escherichia coli.. Clin Infect Dis 2005 Jan 15;40(2):251-7.
                                                  doi: 10.1086/426819pubmed: 15655743google scholar: lookup
                                                136. Rampacci E, Bottinelli M, Stefanetti V, Hyatt DR, Sgariglia E, Coletti M, Passamonti F. Antimicrobial susceptibility survey on bacterial agents of canine and feline urinary tract infections: Weight of the empirical treatment.. J Glob Antimicrob Resist 2018 Jun;13:192-196.
                                                  doi: 10.1016/j.jgar.2018.01.011pubmed: 29408407google scholar: lookup
                                                137. nRESAPATH (French surveillance network for antimicrobial resistance in bacteria from diseased animals)n, Bourély C, Cazeau G, Haenni M, Jarrige N, Jouy E, Lupo A, Madec J‐Y, Mader R. Monitoring of Antimicrobial Resistance in bacteria from diseased animals in France in 2018: Summary Report of the RESAPATH network (resapath.anses.fr). .
                                                138. nWHO Regional Office for Europe and European Centre for Disease Prevention and Control (ECDC)n. Surveillance of antimicrobial resistance in Europe, 2020 data. .
                                                139. Ribeiro LF, Barbosa MMC, Pinto FR, Lavezzo LF, Rossi GAM, Almeida HMS, Amaral LA. Diarrheagenic Escherichia coli in raw milk, water, and cattle feces in non‐technified dairy farms. Ciência Animal Brasileira 20, e–47449.
                                                140. Riley LW. Pandemic lineages of extraintestinal pathogenic Escherichia coli.. Clin Microbiol Infect 2014 May;20(5):380-90.
                                                  doi: 10.1111/1469-0691.12646pubmed: 24766445google scholar: lookup
                                                141. Riley LW. Distinguishing Pathovars from Nonpathovars: Escherichia coli.. Microbiol Spectr 2020 Dec;8(4).
                                                142. Rojo-Gimeno C, Postma M, Dewulf J, Hogeveen H, Lauwers L, Wauters E. Farm-economic analysis of reducing antimicrobial use whilst adopting improved management strategies on farrow-to-finish pig farms.. Prev Vet Med 2016 Jul 1;129:74-87.
                                                143. Ronco T, Stegger M, Olsen RH, Sekse C, Nordstoga AB, Pohjanvirta T, Lilje B, Lyhs U, Andersen PS, Pedersen K. Spread of avian pathogenic Escherichia coli ST117 O78:H4 in Nordic broiler production.. BMC Genomics 2017 Jan 3;18(1):13.
                                                  doi: 10.1186/s12864-016-3415-6pmc: PMC5210278pubmed: 28049430google scholar: lookup
                                                144. Saidani M, Messadi L, Mefteh J, Chaouechi A, Soudani A, Selmi R, Dâaloul-Jedidi M, Ben Chehida F, Mamlouk A, Jemli MH, Madec JY, Haenni M. Various Inc-type plasmids and lineages of Escherichia coli and Klebsiella pneumoniae spreading bla(CTX-M-15,)bla(CTX-M-1) and mcr-1 genes in camels in Tunisia.. J Glob Antimicrob Resist 2019 Dec;19:280-283.
                                                  doi: 10.1016/j.jgar.2019.05.007pubmed: 31100503google scholar: lookup
                                                145. Salinas L, Cárdenas P, Johnson TJ, Vasco K, Graham J, Trueba G. Diverse Commensal Escherichia coli Clones and Plasmids Disseminate Antimicrobial Resistance Genes in Domestic Animals and Children in a Semirural Community in Ecuador.. mSphere 2019 May 22;4(3).
                                                  doi: 10.1128/mSphere.00316-19pmc: PMC6531886pubmed: 31118304google scholar: lookup
                                                146. Satué K, Gardon J. Pregnancy Loss in Mares. .
                                                147. Schmidt VM, Pinchbeck GL, Nuttall T, McEwan N, Dawson S, Williams NJ. Antimicrobial resistance risk factors and characterisation of faecal E. coli isolated from healthy Labrador retrievers in the United Kingdom.. Prev Vet Med 2015 Apr 1;119(1-2):31-40.
                                                148. Singer RS, Hofacre CL. Potential impacts of antibiotic use in poultry production.. Avian Dis 2006 Jun;50(2):161-72.
                                                  doi: 10.1637/7569-033106R.1pubmed: 16863062google scholar: lookup
                                                149. Smith KL, Todhunter DA, Schoenberger PS. Environmental mastitis: cause, prevalence, prevention.. J Dairy Sci 1985 Jun;68(6):1531-53.
                                                150. Solà-Ginés M, Cameron-Veas K, Badiola I, Dolz R, Majó N, Dahbi G, Viso S, Mora A, Blanco J, Piedra-Carrasco N, González-López JJ, Migura-Garcia L. Diversity of Multi-Drug Resistant Avian Pathogenic Escherichia coli (APEC) Causing Outbreaks of Colibacillosis in Broilers during 2012 in Spain.. PLoS One 2015;10(11):e0143191.
                                                151. Stromberg ZR, Johnson JR, Fairbrother JM, Kilbourne J, Van Goor A, Curtiss R Rd, Mellata M. Evaluation of Escherichia coli isolates from healthy chickens to determine their potential risk to poultry and human health.. PLoS One 2017;12(7):e0180599.
                                                152. Suay-García B, Galán F, Rodríguez-Iglesias MA, Pérez-Gracia MT. Detection and Characterization of Extended-Spectrum Beta-Lactamases-Producing Escherichia coli in Animals.. Vector Borne Zoonotic Dis 2019 Feb;19(2):115-120.
                                                  doi: 10.1089/vbz.2018.2333pubmed: 30129883google scholar: lookup
                                                153. nSwedish Veterinary Antibiotic Resistance Monitoring (SVARM)n. Sales of antibiotics and occurrence of resistance in Sweden. .
                                                154. nSwedish Veterinary Antibiotic Resistance Monitoring (SVARM)n. Sales of antibiotics and occurrence of resistance in Sweden. .
                                                155. Teichmann-Knorrn S, Reese S, Wolf G, Hartmann K, Dorsch R. Prevalence of feline urinary tract pathogens and antimicrobial resistance over five years.. Vet Rec 2018 Jul 7;183(1):21.
                                                  doi: 10.1136/vr.104440pubmed: 29622684google scholar: lookup
                                                156. Tello M, Ocejo M, Oporto B, Hurtado A. Prevalence of Cefotaxime-Resistant Escherichia coli Isolates from Healthy Cattle and Sheep in Northern Spain: Phenotypic and Genome-Based Characterization of Antimicrobial Susceptibility.. Appl Environ Microbiol 2020 Jul 20;86(15).
                                                  doi: 10.1128/AEM.00742-20pmc: PMC7376548pubmed: 32471914google scholar: lookup
                                                157. Temple D, Jiménez M, Escribano D, Martín-Valls G, Díaz I, Manteca X. Welfare Benefits of Intradermal Vaccination of Piglets.. Animals (Basel) 2020 Oct 16;10(10).
                                                  doi: 10.3390/ani10101898pmc: PMC7602853pubmed: 33081216google scholar: lookup
                                                158. nThe Center for Food Security & Public Healthn. Zoonotic Diseases of cattle. .
                                                159. Tyson GH, McDermott PF, Li C, Chen Y, Tadesse DA, Mukherjee S, Bodeis-Jones S, Kabera C, Gaines SA, Loneragan GH, Edrington TS, Torrence M, Harhay DM, Zhao S. WGS accurately predicts antimicrobial resistance in Escherichia coli.. J Antimicrob Chemother 2015 Oct;70(10):2763-9.
                                                  pubmed: 26142410doi: 10.1093/jac/dkv186google scholar: lookup
                                                160. Tzipori SR, Makin TJ, Smith ML, Krautil FL. Clinical manifestations of diarrhea in calves infected with rotavirus and enterotoxigenic Escherichia coli.. J Clin Microbiol 1981 Jun;13(6):1011-6.
                                                161. Tzipori S, Sherwood D, Angus KW, Campbell I, Gordon M. Diarrhea in lambs: experimental infections with enterotoxigenic Escherichia coli, rotavirus, and Cryptosporidium sp.. Infect Immun 1981 Aug;33(2):401-6.
                                                  doi: 10.1128/iai.33.2.401-406.1981pmc: PMC350712pubmed: 6268543google scholar: lookup
                                                162. Uhde FL, Kaufmann T, Sager H, Albini S, Zanoni R, Schelling E, Meylan M. Prevalence of four enteropathogens in the faeces of young diarrhoeic dairy calves in Switzerland.. Vet Rec 2008 Sep 20;163(12):362-6.
                                                  doi: 10.1136/vr.163.12.362pubmed: 18806281google scholar: lookup
                                                163. nUK‐VARSSn. UK Veterinary Antibiotic Resistance and Sales Surveillance Report (UK‐VARSS 2018). .
                                                164. Uotani Y, Kitahara R, Imai T, Tsutsumi N, Sasakawa C, Nagai S, Nagano T. Efficacy of an avian colibacillosis live vaccine for layer breeder in Japan.. J Vet Med Sci 2017 Jul 19;79(7):1215-1219.
                                                  doi: 10.1292/jvms.17-0189pmc: PMC5559366pubmed: 28603216google scholar: lookup
                                                165. Valat C, Drapeau A, Beurlet S, Bachy V, Boulouis HJ, Pin R, Cazeau G, Madec JY, Haenni M. Pathogenic Escherichia coli in Dogs Reveals the Predominance of ST372 and the Human-Associated ST73 Extra-Intestinal Lineages.. Front Microbiol 2020;11:580.
                                                  doi: 10.3389/fmicb.2020.00580pmc: PMC7186358pubmed: 32373083google scholar: lookup
                                                166. Valverde A, Grill F, Coque TM, Pintado V, Baquero F, Cantón R, Cobo J. High rate of intestinal colonization with extended-spectrum-beta-lactamase-producing organisms in household contacts of infected community patients.. J Clin Microbiol 2008 Aug;46(8):2796-9.
                                                  doi: 10.1128/JCM.01008-08pmc: PMC2519510pubmed: 18562591google scholar: lookup
                                                167. van den Bunt G, Fluit AC, Spaninks MP, Timmerman AJ, Geurts Y, Kant A, Scharringa J, Mevius D, Wagenaar JA, Bonten MJM, van Pelt W, Hordijk J. Faecal carriage, risk factors, acquisition and persistence of ESBL-producing Enterobacteriaceae in dogs and cats and co-carriage with humans belonging to the same household.. J Antimicrob Chemother 2020 Feb 1;75(2):342-350.
                                                  doi: 10.1093/jac/dkz462pmc: PMC6966097pubmed: 31711228google scholar: lookup
                                                168. Vanstokstraeten R, Belasri N, Demuyser T, Crombé F, Barbé K, Piérard D. A comparison of E. coli susceptibility for amoxicillin/clavulanic acid according to EUCAST and CLSI guidelines.. Eur J Clin Microbiol Infect Dis 2021 Nov;40(11):2371-2377.
                                                  pubmed: 34175999doi: 10.1007/s10096-021-04297-0google scholar: lookup
                                                169. Vandekerchove D, Vandemaele F, Adriaensen C, Zaleska M, Hernalsteens JP, De Baets L, Butaye P, Van Immerseel F, Wattiau P, Laevens H, Mast J, Goddeeris B, Pasmans F. Virulence-associated traits in avian Escherichia coli: comparison between isolates from colibacillosis-affected and clinically healthy layer flocks.. Vet Microbiol 2005 Jun 15;108(1-2):75-87.
                                                  doi: 10.1016/j.vetmic.2005.02.009pubmed: 15917135google scholar: lookup
                                                170. VKM. Assessment of the transfer of antimicrobial resistance between pets and humans in Norway. Opinion of the Panel on biological hazards of the Norwegian Scientific Committee for Food Safety. .
                                                171. Wasiński B. Extra-intestinal pathogenic Escherichia coli - threat connected with food-borne infections.. Ann Agric Environ Med 2019 Dec 19;26(4):532-537.
                                                  doi: 10.26444/aaem/111724pubmed: 31885224google scholar: lookup
                                                172. Weber LP, Dreyer S, Heppelmann M, Schaufler K, Homeier-Bachmann T, Bachmann L. Prevalence and Risk Factors for ESBL/AmpC-E. coli in Pre-Weaned Dairy Calves on Dairy Farms in Germany.. Microorganisms 2021 Oct 12;9(10).
                                                173. Wedley AL, Maddox TW, Westgarth C, Coyne KP, Pinchbeck GL, Williams NJ, Dawson S. Prevalence of antimicrobial-resistant Escherichia coli in dogs in a cross-sectional, community-based study.. Vet Rec 2011 Apr 2;168(13):354.
                                                  doi: 10.1136/vr.d1540pubmed: 21498238google scholar: lookup
                                                174. Whitmer GR, Moorthy G, Arshad M. The pandemic Escherichia coli sequence type 131 strain is acquired even in the absence of antibiotic exposure.. PLoS Pathog 2019 Dec;15(12):e1008162.
                                                175. Windahl U, Holst BS, Nyman A, Grönlund U, Bengtsson B. Characterisation of bacterial growth and antimicrobial susceptibility patterns in canine urinary tract infections.. BMC Vet Res 2014 Sep 24;10:217.
                                                  doi: 10.1186/s12917-014-0217-4pmc: PMC4180317pubmed: 25249356google scholar: lookup
                                                176. Wooley RE, Gibbs PS, Brown TP, Maurer JJ. Chicken embryo lethality assay for determining the virulence of avian Escherichia coli isolates.. Avian Dis 2000 Apr-Jun;44(2):318-24.
                                                  pubmed: 10879912
                                                177. nWorld Organisation for Animal Health (OIE)n. OIE list of antimicrobial agents of veterinary importance. .
                                                178. Yu D, Banting G, Neumann NF. A review of the taxonomy, genetics, and biology of the genus Escherichia and the type species Escherichia coli.. Can J Microbiol 2021 Aug;67(8):553-571.
                                                  doi: 10.1139/cjm-2020-0508pubmed: 33789061google scholar: lookup
                                                179. Zanella A, Alborali GL, Bardotti M, Candotti P, Guadagnini PF, Martino PA, Stonfer M. Severe Escherichia coli O111 septicaemia and polyserositis in hens at the start of lay.. Avian Pathol 2000 Aug;29(4):311-7.
                                                  doi: 10.1080/03079450050118430pubmed: 19184820google scholar: lookup
                                                180. nZhou Z, Shen B, Bi D. Chapter 30 - Management of pathogens in poultry. Animal Agriculture pp. 515–530.

                                                Citations

                                                This article has been cited 4 times.
                                                1. Duarte ME, Garavito-Duarte Y, Kim SW. Impacts of F18(+)Escherichia coli on Intestinal Health of Nursery Pigs and Dietary Interventions.. Animals (Basel) 2023 Sep 2;13(17).
                                                  doi: 10.3390/ani13172791pubmed: 37685055google scholar: lookup
                                                2. Navarro Mamani DA, Ramos Huere H, Vera Buendia R, Rojas M, Chunga WA, Valdez Gutierrez E, Vergara Abarca W, Rivera Gerónimo H, Altamiranda-Saavedra M. Would Climate Change Influence the Potential Distribution and Ecological Niche of Bluetongue Virus and Its Main Vector in Peru?. Viruses 2023 Mar 30;15(4).
                                                  doi: 10.3390/v15040892pubmed: 37112872google scholar: lookup
                                                3. Barros MM, Castro J, Araújo D, Campos AM, Oliveira R, Silva S, Outor-Monteiro D, Almeida C. Swine Colibacillosis: Global Epidemiologic and Antimicrobial Scenario.. Antibiotics (Basel) 2023 Mar 30;12(4).
                                                  doi: 10.3390/antibiotics12040682pubmed: 37107044google scholar: lookup
                                                4. Candellone A, Badino P, Girolami F, Ala U, Mina F, Odore R. Dog Owners' Attitude toward Veterinary Antibiotic Use and Antibiotic Resistance with a Focus on Canine Diarrhea Management.. Animals (Basel) 2023 Mar 15;13(6).
                                                  doi: 10.3390/ani13061061pubmed: 36978602google scholar: lookup