Abstract: Dietary composition substantially influences the intensity and site of microbial metabolite production in the gastrointestinal tract. These metabolites have numerous beneficial effects on equine health, but may also be involved in the development of gastrointestinal disorders. It remains unclear whether different feeding strategies, including starch supplementation, can alter microbial metabolite profiles along the gastrointestinal tract. This study aimed to compare the metabolite profiles of the microbial communities in the gastrointestinal tract of horses fed on pasture 24 h/day (PST; n = 4), hay ad libitum (HAY; n = 8) or hay ad libitum and oats at 1 g starch/kg body weight (BW)/meal (OS1; n = 6) or 2 g starch/kg BW/meal (OS2; n = 6). After the feeding period, the horses were euthanised and dissected. Digesta samples were taken from different sections of the gastrointestinal tract and analysed for dry matter content, pH, short chain fatty acids (SCFA), ammonia and lactate. Significant differences were found among the sections for each parameter (P < 0.001) demonstrating a clear separation between foregut and hindgut and between proximal and distal sections of the hindgut. The ration type significantly affected dry matter (P < 0.001), total SCFA (P = 0.011), n-butyrate (P = 0.015), n-valerate (P = 0.045) and iso-SCFA concentrations (P = 0.017), while ration × section interactions were also detected for dry matter (P = 0.001), n-butyrate (P = 0.012), n-valerate (P = 0.001), iso-SCFA (P < 0.001) and ammonia (P < 0.001). The PST group was characterised by higher total SCFA concentrations in digesta, indicating enhanced fermentative activity. Particularly in the distal hindgut sections, higher concentrations of n-valerate, iso-SCFA and ammonia suggested increased amino acid fermentation and a potentially altered microbial protein metabolism. The supplementation of oats affected microbial metabolites predominantly in the stomach and suggested higher proteolytic activities.
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Overview
This study investigated how different diets—pasture, hay, or oat-supplemented hay—affect microbial metabolite production throughout the gastrointestinal tract of horses.
The researchers measured various metabolites and chemical parameters in different gut sections to understand diet-driven changes in microbial fermentation and metabolism.
Introduction and Study Purpose
The gastrointestinal (GI) tract of horses hosts microbial communities that ferment feed and produce metabolites beneficial for health.
However, these metabolites can also contribute to gastrointestinal disorders.
Different feeding strategies, particularly starch supplementation, might change where and how microbes produce these metabolites along the GI tract, but this is not well understood in horses.
This study aimed to characterize and compare the profiles of microbial metabolites throughout the GI tract in horses fed three different diets: pasture 24 h/day, hay ad libitum, and hay with two levels of oat (starch) supplementation.
Study Design and Methods
Four groups of horses were fed different diets:
PST: Pasture 24 hours/day (n=4)
HAY: Hay ad libitum (n=8)
OS1: Hay ad libitum + oats at 1 g starch/kg body weight/meal (n=6)
OS2: Hay ad libitum + oats at 2 g starch/kg body weight/meal (n=6)
After the feeding period, horses were euthanised for sample collection.
Digesta (intestinal contents) samples were collected from multiple sections of the GI tract, spanning foregut and hindgut.
Parameters analyzed included:
Dry matter content
pH level
Short chain fatty acids (SCFAs) such as n-butyrate, n-valerate, iso-SCFAs
Ammonia concentration
Lactate concentration
Statistical analyses tested for differences between gut sections, diets, and interactions between diet and section.
Key Findings: Gastrointestinal Tract Differences
Significant differences in dry matter, pH, SCFAs, ammonia, and lactate were found between GI tract sections (P < 0.001).
Clear separation was observed between:
Foregut (stomach and small intestine) and hindgut (cecum and colon)
Proximal and distal sections within the hindgut
These differences reflect the diverse microbial activities and environments in different parts of the gut.
Key Findings: Diet-Driven Effects on Microbial Metabolites
Diet significantly affected:
Dry matter content (P < 0.001)
Total SCFA concentration (P = 0.011)
n-Butyrate (P = 0.015)
n-Valerate (P = 0.045)
Iso-SCFA levels (P = 0.017)
There were significant interactions between diet and GI tract section affecting dry matter, n-butyrate, n-valerate, iso-SCFAs, and ammonia (all P ≤ 0.012), meaning diet effects varied along the gut.
Interpreting the Metabolite Patterns
Pasture-fed horses (PST group) had:
Higher total SCFA concentrations in digesta, suggesting more intense microbial fermentation activity.
Elevated levels of n-valerate, iso-SCFAs, and ammonia in distal hindgut sections, indicating increased microbial fermentation of amino acids and altered microbial protein metabolism.
Hay-only and oat-supplemented groups had distinct metabolite profiles:
Oat supplementation notably influenced metabolites primarily in the stomach region of the foregut.
This suggests increased proteolytic (protein-degrading) microbial activities possibly due to the starch in oats.
Conclusions and Implications
The type of diet significantly changes microbial metabolism along the equine GI tract, both in the foregut and hindgut.
Pasture feeding promotes robust microbial fermentation and amino acid breakdown in the hindgut, which could have beneficial or detrimental effects depending on context.
Starch supplementation with oats alters stomach microbial metabolism, possibly increasing protein degradation.
Understanding these differences helps in managing equine diets to optimize gut health and reduce risk of gastrointestinal disorders related to microbial metabolite imbalances.
Cite This Article
APA
Santo MM, Bachmann M, Schusser GF, Wensch-Dorendorf M, Pisch C, Bochnia M, Hüther L, Heinichen K, Zeyner A.
(2026).
Characterisation of microbial metabolite profiles across the gastrointestinal tract of horses fed on pasture, hay or oat-supplemented rations.
PLoS One, 21(9), e0359277.
https://doi.org/10.1371/journal.pone.0359277