Diagnosis and Surveillance of West Nile Virus Infection in Horses: Current Methods, Challenges, and Future Directions.
Abstract: West Nile virus (WNV) is a mosquito-borne flavivirus of growing importance for both human and equine health in Europe. Horses are highly susceptible to neurological disease and, because they share ecological exposure with humans, they represent valuable sentinels for detecting local viral circulation within a One Health framework. However, diagnosis of WNV infection in equines is complicated by the short and low-level viraemia, which limits the sensitivity of molecular assays, and by serological cross-reactivity with related flaviviruses and the confounding effects of vaccination. In this narrative review, we summarise the current diagnostic tools for WNV in horses, including direct detection methods (RT-qPCR, virus isolation, antigen detection) and indirect serological approaches (IgM and IgG ELISA, virus neutralisation tests), and discuss their practical performance and constraints in clinical and surveillance settings. We further examine equine surveillance systems, passive clinical reporting, active serosurveys and sentinel cohorts, and their integration with vector, avian and environmental monitoring. Key challenges include methodological heterogeneity, limited access to confirmatory testing and variable cross-sector data sharing. Finally, we outline future directions, highlighting the need for harmonised laboratory protocols, innovative field-deployable diagnostics, genomic surveillance and integrated, multi-source monitoring systems to strengthen early warning capacity and improve preparedness for WNV outbreaks in equine populations.
The Equine Research Bank provides access to a large database of publicly available scientific literature. Inclusion in the Research Bank does not imply endorsement of study methods or findings by Mad Barn.
This research summary has been generated with artificial intelligence and may contain errors and omissions. Refer to the original study to confirm details provided. Submit correction.
Overview
This research article reviews the current methods for diagnosing and monitoring West Nile virus (WNV) infection in horses.
It highlights challenges in existing diagnostic techniques and surveillance strategies, and discusses potential improvements for better detection and management of WNV in equine populations.
Introduction to West Nile Virus and Equine Health
West Nile virus is a mosquito-transmitted flavivirus affecting both humans and horses, with increasing importance in Europe.
Horses are highly susceptible to neurological disease caused by WNV, making them critical animals for monitoring local virus circulation.
Because horses and humans share environmental exposure to mosquitoes, equines serve as effective sentinels within a One Health approach, linking animal and human health surveillance.
Challenges in Diagnosing WNV in Horses
WNV infection is difficult to diagnose in horses due to short and low-level viraemia, which reduces the effectiveness of molecular diagnostic methods.
Serological testing is complicated by cross-reactivity with other related flaviviruses, which can produce false positives or ambiguous results.
Vaccination against WNV also interferes with serological tests, making it harder to differentiate between vaccinated and naturally infected horses.
Current Diagnostic Tools
Direct detection methods include:
RT-qPCR (Reverse Transcription quantitative Polymerase Chain Reaction): detects viral RNA but limited by low viremia.
Virus isolation: more definitive but time-consuming and requires specialized labs.
Antigen detection tests, which identify viral proteins.
Indirect serological approaches include:
IgM and IgG ELISA tests: detect antibodies indicating recent or past infection but can cross-react with other flaviviruses.
Virus neutralization tests (VNT): considered the gold standard for confirmation due to high specificity but are technically demanding and less widely available.
Equine Surveillance Systems
Passive clinical reporting involves veterinarians and animal owners reporting suspected WNV cases, but underreporting can be significant.
Active serosurveys test populations of horses to detect antibodies and monitor virus circulation even without clinical disease.
Sentinel cohorts: selected groups of horses monitored regularly to identify new infections early.
Combination of equine surveillance with vector (mosquito), avian (bird), and environmental monitoring enhances the understanding of virus ecology and outbreak risks.
Key Challenges in Surveillance and Diagnosis
Heterogeneity in diagnostic methods and protocols across laboratories and regions reduces consistency of results.
Limited access to confirmatory testing (like virus neutralization) restricts accurate diagnosis and surveillance confirmation.
Variable sharing of data between sectors (animal health, public health, environmental monitoring) undermines integrated response efforts.
Future Directions and Recommendations
Development and adoption of harmonized laboratory protocols to standardize testing procedures and allow better comparison of data.
Creation of innovative, field-deployable diagnostic tools that can provide rapid and accurate detection near the point of care.
Expansion of genomic surveillance to monitor viral evolution and track outbreak sources.
Integration of multi-source data including equine, vector, avian, and environmental information into comprehensive monitoring systems.
Strengthening early warning capabilities and preparedness strategies for timely interventions during WNV outbreaks in horses.
Cite This Article
APA
(2026).
Diagnosis and Surveillance of West Nile Virus Infection in Horses: Current Methods, Challenges, and Future Directions.
Vet Sci, 13(4), 332.
https://doi.org/10.3390/vetsci13040332
Wang Y, Calzolari M, Calvi G, Cox V, Angelini P, Dottori M, Wint W, Jahn S, Marini G, Dorigatti I. Association of avian biodiversity and West Nile Virus circulation in Culex mosquitoes in Emilia-Romagna, Italy.. PLoS Negl. Trop. Dis. 2026;20:e0014076.
Pérez-Ramírez E, Cano-Gómez C, Llorente F, Vodica A, Veljović L, Toklikishvilli N, Sherifi K, Sghaier S, Omani A, Kustura A. Evaluation of West Nile Virus Diagnostic Capacities in Veterinary Laboratories of the Mediterranean and Black Sea Regions.. Pathogens 2020;9:1038.
Lustig Y, Sofer D, Bucris ED, Mendelson E. Surveillance and Diagnosis of West Nile Virus in the Face of Flavivirus Cross-Reactivity.. Front. Microbiol. 2018;9:2421.
Lu Z, Fu S, Cao L, Tang C, Zhang S, Li Z, Tusong M, Yao X, Zhang H, Wang P. Human Infection with West Nile Virus, Xinjiang, China, 2011.. Emerg. Infect. Dis. 2014;20:1421–1423.
Fiacre L, Pagès N, Albina E, Richardson J, Lecollinet S, Gonzalez G. Molecular Determinants of West Nile Virus Virulence and Pathogenesis in Vertebrate and Invertebrate Hosts.. Int. J. Mol. Sci. 2020;21:9117.
Zehender G, Veo C, Ebranati E, Carta V, Rovida F, Percivalle E, Moreno A, Lelli D, Calzolari M, Lavazza A. Reconstructing the recent West Nile virus lineage 2 epidemic in Europe and Italy using discrete and continuous phylogeography.. PLoS ONE 2017;12:e0179679.
Aguilera-Sepúlveda P, Napp S, Llorente F, Solano-Manrique C, Molina-López R, Obón E, Solé A, Jiménez-Clavero MÁ, Fernández-Pinero J, Busquets N. West Nile Virus Lineage 2 Spreads Westwards in Europe and Overwinters in North-Eastern Spain (2017–2020). Viruses 2022;14:569.
Patzina-Mehling C, Kopp A, Rauhöft L, Șuleșco T, Jones TC, Drosten C, Sauer FG, Lühken R, Junglen S. Genomic surveillance indicates high site-specific heterogeneity of West Nile virus in mosquitoes in rural regions of Germany across seasons.. One Health 2025;21:101179.
García-Carrasco JM, Muñoz AR, Olivero J, Figuerola J, Fa JE, Real R. Gone (and spread) with the birds: Can chorotype analysis highlight the spread of West Nile virus within the Afro-Palaearctic flyway?. One Health 2023;17:100585.
Giesen C, Herrador Z, Fernández-Martínez B, Figuerola J, Gangoso L, Vázquez A, Gómez-Barroso D. A systematic review of environmental factors related to WNV circulation in European and Mediterranean countries.. One Health 2023;16:100478.
Ferraguti M, Heesterbeek H, La Puente M, Jiménez-Clavero M, Vázquez A, Ruíz S, Llorente F, Roiz D, Vernooij H, Soriguer R. The role of different Culex mosquito species in the transmission of West Nile virus and avian malaria parasites in Mediterranean areas.. Transbound Emerg Dis 2020;68:920–930.
Soto A, De Coninck L, Devlies A, Van De Wiele C, Rosas A, Wang L, Matthijnssens J, Delang L. Belgian Culex pipiens pipiens are competent vectors for West Nile virus while Culex modestus are competent vectors for Usutu virus.. PLoS Negl Trop Dis 2023;17:e0011649.
Baril C, Pilling B, Mikkelsen M, Sparrow J, Duncan C, Koloski C, LaZerte S, Cassone B. The influence of weather on the population dynamics of common mosquito vector species in the Canadian Prairies.. Parasites Vectors 2023;16:153.
Marcantonio M, Rizzoli A, Metz M, Rosà R, Marini G, Chadwick E, Neteler M. Identifying the Environmental Conditions Favouring West Nile Virus Outbreaks in Europe.. PLoS ONE 2015;10:e0121158.
Paz S, Semenza J. Environmental Drivers of West Nile Fever Epidemiology in Europe and Western Asia—A Review.. Int J Environ Res Public Health 2013;10:3543–3562.
Mancuso E, Cecere JG, Iapaolo F, Di Gennaro A, Sacchi M, Savini G, Spina F, Monaco F. West Nile and Usutu Virus Introduction via Migratory Birds: A Retrospective Analysis in Italy.. Viruses 2022;14:416.
Srihi H, Chatti N, Ben Mhadheb M, Gharbi J, Abid N. Phylodynamic and phylogeographic analysis of the complete genome of the West Nile virus lineage 2 (WNV-2) in the Mediterranean basin.. BMC Ecol Evol 2021;21:183.
Mencattelli G, Ndione M, Silverj A, Diagne M, Curini V, Teodori L, Di Domenico M, Mbaye R, Leone A, Marcacci M. Spatial and temporal dynamics of West Nile virus between Africa and Europe.. Nat Commun 2023;14:6440.
Lu L, Zhang F, Oude Munnink BB, Munger E, Sikkema RS, Pappa S, Tsioka K, Sinigaglia A, Molin ED, Shih BB. West Nile virus spread in Europe: Phylogeographic pattern analysis and key drivers.. PLoS Pathog 2024;20:e1011880.
Watts MJ, Sarto i Monteys V, Mortyn PG, Kotsila P. The rise of West Nile Virus in Southern and Southeastern Europe: A spatial-temporal analysis investigating the combined effects of climate, land use and economic changes. One Health 2021;13:100315.
Taheri S, González MA, Ruiz-López MJ, Soriguer R, Figuerola J. Patterns of West Nile virus vector co-occurrence and spatial overlap with human cases across Europe. One Health 2025;20:101041.
Serres K, Erazo D, Despréaux G, Vincenti-González M, Van Bortel W, Arsevska E, Dellicour S. Integrating indicator-based and event-based surveillance data for risk mapping of West Nile virus, Europe, 2006 to 2021. Eurosurveillance 2024;29:2400084.
Tolnai CH, Forgách P, Marosi A, Fehér O, Paszerbovics B, Tenk M, Wagenhoffer Z, Kutasi O. Long-Term Humoral Immune Response After West Nile Virus Convalescence in Horses in a Geographic Area of Multiple Orthoflavivirus Co-Circulation. J. Vet. Intern. Med. 2025;39:e70176.
Marino A, Vitale E, Maniaci A, La Via L, Moscatt V, Spampinato S, Senia P, Venanzi Rullo E, Restivo V, Cacopardo B. West Nile Virus: Insights into Microbiology, Epidemiology, and Clinical Burden. Acta Microbiol. Hell. 2025;70:44.
Lai J, Tessarolo C, Ercole E, Gallo M, Lo Faro M, Palmitessa C, Carta V, Ferrari A, Favole A, Begovoeva M. β-Actin as an Endogenous Control Gene in Real-Time PCR for Detection of West Nile and Usutu Virus in Mosquitoes. Microorganisms 2025;13:2518.
Naveed A, Eertink LG, Wang D, Li F. Lessons Learned from West Nile Virus Infection: Vaccinations in Equines and Their Implications for One Health Approaches. Viruses 2024;16:781.
Madere FS, Andrade da Silva AV, Okeze E, Tilley E, Grinev A, Konduru K, García M, Rios M. Flavivirus infections and diagnostic challenges for dengue, West Nile and Zika Viruses. NPJ Viruses 2025;3:36.
Patel P, Landt O, Kaiser M, Faye O, Koppe T, Lass U, Sall AA, Niedrig M. Development of one-step quantitative reverse transcription PCR for the rapid detection of flaviviruses. Virol. J. 2013;10:58.
Vina-Rodriguez A, Sachse K, Ziegler U, Chaintoutis S, Keller M, Groschup M, Eiden M. A Novel Pan-Flavivirus Detection and Identification Assay Based on RT-qPCR and Microarray.. BioMed Res. Int. 2017;2017:4248756.
Scaramozzino N, Crance J, Jouan A, Debriel D, Stoll F, Garín D. Comparison of Flavivirus Universal Primer Pairs and Development of a Rapid, Highly Sensitive Heminested Reverse Transcription-PCR Assay for Detection of Flaviviruses Targeted to a Conserved Region of the NS5 Gene Sequences.. J. Clin. Microbiol. 2001;39:1922–1927.
Girl P, Euringer K, Coroian M, Mihalca AD, Borde JP, Dobler G. Comparison of Five Serological Methods for the Detection of West Nile Virus Antibodies.. Viruses 2024;16:788.
Gómez-Vicente E, Garcia R, Calatrava E, Olivares Duran MJ, Gutiérrez-Bautista JF, Rodriguez-Granger J, Cobo F, Navarro Mari JM, Sampedro-Martinez A. Comparative evaluation of chemiluminescent immunoassay and enzyme-linked immunosorbent assays for the diagnosis of West Nile virus infections.. APMIS 2022;130:215–220.
Lustig Y, Indenbaum V, Koren R, Katz-Likvornik S, Halpern O, Mendelson E. The diagnostic utility of Immunoglobulin G (IgG) avidity in distinguishing between past and acute infection of West Nile Virus (WNV). J. Clin. Microbiol. 2025;63:e0095225.
. West Nile Virus Diagnostic Guidance for Veterinarians.. .
Vilibic-Cavlek T, Bogdanic M, Savic V, Hruskar Z, Barbic L, Stevanovic V, Antolasic L, Milasincic L, Sabadi D, Miletic G. Diagnosis of West Nile virus infections: Evaluation of different laboratory methods.. World J. Virol. 2024;13:95986.
Lanciotti RS, Kerst AJ, Nasci RS, Godsey MS, Mitchell CJ, Savage HM, Komar N, Panella NA, Allen BC, Volpe KE. Rapid detection of west nile virus from human clinical specimens, field-collected mosquitoes, and avian samples by a TaqMan reverse transcriptase-PCR assay. J. Clin. Microbiol. 2000;38:4066–4071.
WOAH. West Nile Fever. [(accessed on 22 November 2025)]. Available online: https://www.woah.org/fileadmin/Home/eng/Health_standards/tahm/3.01.25_WEST_NILE.pdf.
CDC [(accessed on 12 December 2025)]; Available online: https://www.cdc.gov/west-nile-virus/php/surveillance-and-control-guidelines/index.html.
Cabre O, Grandadam M, Marié JL, Gravier P, Prangé A, Santinelli Y, Rous V, Bourry O, Durand JP, Tolou H. West Nile Virus in horses, sub-Saharan Africa. Emerg. Infect. Dis. 2006;12:1958–1960.
Costa EA, Bayeux JJM, Silva ASG, de Queiroz GA, Santos BS, Álvares da Silva S, Rocha MN, Rehfeld IS, de Souza Franklin LF, Valle LB. Epidemiological surveillance of West Nile virus in the world and Brazil: Relevance of equine surveillance in the context of “One Health”. Braz. J. Vet. Res. Anim. Sci. 2020 56:e164335.
Gobbo F, Chiarello G, Sgubin S, Toniolo F, Gradoni F, Danca LI, Carlin S, Capello K, De Conti G, Bortolami A. Integrated One Health Surveillance of West Nile Virus and Usutu Virus in the Veneto Region, Northeastern Italy, from 2022 to 2023. Pathogens 2025;14:227.
Farooq Z, Rocklöv J, Wallin J, Abiri N, Sewe M.O, Sjödin H, Semenza J.C. Artificial intelligence to predict West Nile virus outbreaks with eco-climatic drivers. Lancet Reg. Health Eur. 2022;17:100370.
Farooq Z, Sjödin H, Semenza J.C, Tozan Y, Sewe M.O, Wallin J, Rocklöv J. European projections of West Nile virus transmission under climate change scenarios. One Health 2023;16:100509.
Gossner C.M, Marrama L, Carson M, Allerberger F, Calistri P, Dilaveris D, Lecollinet S, Morgan D, Nowotny N, Paty M.C. West Nile virus surveillance in Europe: Moving towards an integrated animal-human-vector approach. Eurosurveillance 2017;22:30526.
Chevalier V, Lecollinet S, Durand B. West Nile virus in Europe: A comparison of surveillance system designs in a changing epidemiological context. Vector Borne Zoonotic Dis. 2011;11:1085–1091.
Petrović T, Šekler M, Petrić D, Vidanović D, Debeljak Z, Lazić G, Lupulović D, Kavran M, Samojlović M, Ignjatović Ćupina A. Intensive West Nile Virus Circulation in Serbia in 2018—Results of Integrated Surveillance Program. Pathogens 2021;10:1294.
Dente M.G, Riccardo F, Nacca G, Ranghiasci A, Escadafal C, Gaayeb L, Jiménez-Clavero M.A, Manuguerra J.-C, Picard M, Fernández-Pinero J. Strengthening Preparedness for Arbovirus Infections in Mediterranean and Black Sea Countries: A Conceptual Framework to Assess Integrated Surveillance in the Context of the One Health Strategy. Int. J. Environ. Res. Public Health 2018;15:489.
Marchino M, Paternoster G, Favretto A.R, Balduzzi G, Berezowski J, Tomassone L, Working Groups for WNV surveillance of Emilia-Romagna, Lombardy and Piedmont Regions. Process evaluation of integrated West Nile virus surveillance in northern Italy: An example of a One Health approach in public health policy.. Eval. Program Plann. 2021;89:101991.
Brandolini M, Mistral De Pascali A, Zaghi I, Dirani G, Zannoli S, Ingletto L, Lavazza A, Lelli D, Dottori M, Calzolari M. Advancing West Nile virus monitoring through whole genome sequencing: Insights from a One Health genomic surveillance study in Romagna (Italy). One Health 2024;19:100937.
Suntrarachun S, Akesowan S, Khunsup S. Multiplex SYBR Green real-time RT-PCR assays for the improved detection of viral pathogens in horses: Equine infectious anemia, West Nile and Japanese encephalitis viruses.. Thai J. Vet. Med. 2022 52:657–667.
Tóth G, Petersen M, Chevenet F, Sikora M, Tomazatos A, Bialonski A, Baum H, Horváth B, Siriyasatien P, Heitmann A. Blood donors as sentinels for genomic surveillance of West Nile virus in Germany using a sensitive amplicon-based sequencing approach.. J. Infect. 2025;91:106647.
Ghai RR, Wallace RM, Kile JC, Shoemaker TR, Vieira AR, Negron ME, Shadomy SV, Sinclair JR, Goryoka GW, Salyer SJ. A generalizable one health framework for the control of zoonotic diseases. Sci. Rep. 2022;12:8588.
Gonzalez G, Migné CV, Duvignaud A, Martin-Latil S, Bigeard C, Touzet T, Fontaine A, Zientara S, de Lamballerie X, Malvy D. Paradigm Shift Toward “One Health” Monitoring of Culex-Borne Arbovirus Circulation in France: The 2022 Inaugural Spotlight on West Nile and Usutu Viruses in Nouvelle-Aquitaine. Open Forum Infect. Dis. 2025;12:ofaf243.