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Journal of bacteriology2012; 194(23); 6620-6621; doi: 10.1128/JB.01616-12

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.

Abstract: The bacterium Corynebacterium pseudotuberculosis is of major veterinary importance because it affects livestock, particularly sheep, goats, and horses, in several countries, including Australia, Brazil, the United States, and Canada, resulting in significant economic losses. In the present study, we describe the complete genome of the Corynebacterium pseudotuberculosis Cp316 strain, biovar equi, isolated from the abscess of a North American horse.
Publication Date: 2012-11-13 PubMed ID: 23144380PubMed Central: PMC3497548DOI: 10.1128/JB.01616-12Google Scholar: Lookup
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  • Journal Article
  • Research Support
  • Non-U.S. Gov't

Summary

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The research article presents the complete genome sequence of the bacterium Corynebacterium pseudotuberculosis Cp316 strain, found in the abscess of a Californian horse, which is known to cause significant economic losses to livestock industry.

Overview of Corynebacterium pseudotuberculosis

  • The bacterium Corynebacterium pseudotuberculosis is of significant veterinary concern as it impacts livestock, especially sheep, goats, and horses.
  • This bacteria is prevalent in various nations, including Australia, Brazil, the United States, and Canada.
  • Its impact leads to substantial economic losses for the livestock industry, making study and understanding of it crucial.

Study of Corynebacterium pseudotuberculosis Cp316 strain

  • In this study, the researchers have explored the complete genome of the Corynebacterium pseudotuberculosis Cp316 strain.
  • This specific strain, also known as biovar equi, was isolated from the abscess of a horse located in North America.
  • Genome sequencing is a technology that allows researchers to read and decipher the genetic information found in the DNA of organisms, making it a vital tool for understanding bacteria like Corynebacterium pseudotuberculosis.

Implications of the Research

  • The demonstration of the complete genome sequence can provide significant insights into the biology of the Corynebacterium pseudotuberculosis Cp316 strain.
  • This data may highlight particular genetic elements or features that enable this bacterium to infect livestock, survive within hosts, or resist certain treatments.
  • From a practical perspective, understanding organism’s genome often provides fundamental information for developing more effective treatments or preventive strategies.

Cite This Article

APA
Ramos RT, Silva A, Carneiro AR, Pinto AC, Soares Sde C, Santos AR, Almeida SS, Guimarães LC, Aburjaile FF, Barbosa EG, Dorella FA, Rocha FS, Cerdeira LT, Barbosa MS, Tauch A, Edman J, Spier S, Miyoshi A, Schneider MP, Azevedo V. (2012). Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse. J Bacteriol, 194(23), 6620-6621. https://doi.org/10.1128/JB.01616-12

Publication

ISSN: 1098-5530
NlmUniqueID: 2985120R
Country: United States
Language: English
Volume: 194
Issue: 23
Pages: 6620-6621

Researcher Affiliations

Ramos, Rommel Thiago Jucá
  • Institute of Biological Sciences, Federal University of Pará (Universidade Federal do Pará), Belém, Pará, Brazil.
Silva, Artur
    Carneiro, Adriana Ribeiro
      Pinto, Anne Cybelle
        Soares, Siomar de Castro
          Santos, Anderson Rodrigues
            Almeida, Sintia Silva
              Guimarães, Luis Carlos
                Aburjaile, Flávia Figueira
                  Barbosa, Eudes Guilherme Vieira
                    Dorella, Fernanda Alves
                      Rocha, Flávia Souza
                        Cerdeira, Louise Teixeira
                          Barbosa, Maria Silvanira
                            Tauch, Andreas
                              Edman, Judy
                                Spier, Sharon
                                  Miyoshi, Anderson
                                    Schneider, Maria Paula Cruz
                                      Azevedo, Vasco

                                        MeSH Terms

                                        • Abscess / microbiology
                                        • Abscess / veterinary
                                        • Animals
                                        • California
                                        • Corynebacterium Infections / microbiology
                                        • Corynebacterium Infections / veterinary
                                        • Corynebacterium pseudotuberculosis / genetics
                                        • Corynebacterium pseudotuberculosis / isolation & purification
                                        • DNA, Bacterial / chemistry
                                        • DNA, Bacterial / genetics
                                        • Genome, Bacterial
                                        • Horse Diseases / microbiology
                                        • Horses
                                        • Molecular Sequence Data
                                        • Sequence Analysis, DNA

                                        References

                                        This article includes 12 references
                                        1. Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A. Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.. J Microbiol Methods 2011 Aug;86(2):218-23.
                                          pubmed: 21620904doi: 10.1016/j.mimet.2011.05.008google scholar: lookup
                                        2. Hernandez D, François P, Farinelli L, Osterås M, Schrenzel J. De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.. Genome Res 2008 May;18(5):802-9.
                                          pmc: PMC2336802pubmed: 18332092doi: 10.1101/gr.072033.107google scholar: lookup
                                        3. Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.. Nucleic Acids Res 2007;35(9):3100-8.
                                          pmc: PMC1888812pubmed: 17452365doi: 10.1093/nar/gkm160google scholar: lookup
                                        4. Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.. Nucleic Acids Res 1997 Mar 1;25(5):955-64.
                                          pmc: PMC146525pubmed: 9023104doi: 10.1093/nar/25.5.955google scholar: lookup
                                        5. Ramos RT, Carneiro AR, Baumbach J, Azevedo V, Schneider MP, Silva A. Analysis of quality raw data of second generation sequencers with Quality Assessment Software.. BMC Res Notes 2011 Apr 18;4:130.
                                          pmc: PMC3105940pubmed: 21501521doi: 10.1186/1756-0500-4-130google scholar: lookup
                                        6. Ramos RT, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A. Simplifier: a web tool to eliminate redundant NGS contigs.. Bioinformation 2012;8(20):996-9.
                                          pmc: PMC3524941pubmed: 23275695doi: 10.6026/97320630008996google scholar: lookup
                                        7. Ruiz JC, D'Afonseca V, Silva A, Ali A, Pinto AC, Santos AR, Rocha AA, Lopes DO, Dorella FA, Pacheco LG, Costa MP, Turk MZ, Seyffert N, Moraes PM, Soares SC, Almeida SS, Castro TL, Abreu VA, Trost E, Baumbach J, Tauch A, Schneider MP, McCulloch J, Cerdeira LT, Ramos RT, Zerlotini A, Dominitini A, Resende DM, Coser EM, Oliveira LM, Pedrosa AL, Vieira CU, Guimarães CT, Bartholomeu DC, Oliveira DM, Santos FR, Rabelo ÉM, Lobo FP, Franco GR, Costa AF, Castro IM, Dias SR, Ferro JA, Ortega JM, Paiva LV, Goulart LR, Almeida JF, Ferro MI, Carneiro NP, Falcão PR, Grynberg P, Teixeira SM, Brommonschenkel S, Oliveira SC, Meyer R, Moore RJ, Miyoshi A, Oliveira GC, Azevedo V. Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.. PLoS One 2011 Apr 18;6(4):e18551.
                                        8. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. Artemis: sequence visualization and annotation.. Bioinformatics 2000 Oct;16(10):944-5.
                                        9. Silva A, Schneider MP, Cerdeira L, Barbosa MS, Ramos RT, Carneiro AR, Santos R, Lima M, D'Afonseca V, Almeida SS, Santos AR, Soares SC, Pinto AC, Ali A, Dorella FA, Rocha F, de Abreu VA, Trost E, Tauch A, Shpigel N, Miyoshi A, Azevedo V. Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.. J Bacteriol 2011 Jan;193(1):323-4.
                                          pmc: PMC3019927pubmed: 21037006doi: 10.1128/JB.01211-10google scholar: lookup
                                        10. Tsai IJ, Otto TD, Berriman M. Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.. Genome Biol 2010;11(4):R41.
                                          pmc: PMC2884544pubmed: 20388197doi: 10.1186/gb-2010-11-4-r41google scholar: lookup
                                        11. Zdobnov EM, Apweiler R. InterProScan--an integration platform for the signature-recognition methods in InterPro.. Bioinformatics 2001 Sep;17(9):847-8.
                                        12. Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs.. Genome Res 2008 May;18(5):821-9.
                                          pmc: PMC2336801pubmed: 18349386doi: 10.1101/gr.074492.107google scholar: lookup

                                        Citations

                                        This article has been cited 5 times.
                                        1. Sousa TJ, Parise D, Profeta R, Parise MTD, Gomide ACP, Kato RB, Pereira FL, Figueiredo HCP, Ramos R, Brenig B, Costa da Silva ALD, Ghosh P, Barh D, Góes-Neto A, Azevedo V. Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes.. Sci Rep 2019 Nov 8;9(1):16387.
                                          doi: 10.1038/s41598-019-52695-4pubmed: 31705053google scholar: lookup
                                        2. Almeida S, Sousa C, Abreu V, Diniz C, Dorneles EM, Lage AP, Barh D, Azevedo V. Exploration of Nitrate Reductase Metabolic Pathway in Corynebacterium pseudotuberculosis.. Int J Genomics 2017;2017:9481756.
                                          doi: 10.1155/2017/9481756pubmed: 28316974google scholar: lookup
                                        3. Heggelund L, Gaustad P, Håvelsrud OE, Blom J, Borgen L, Sundset A, Sørum H, Frøland SS. Corynebacterium pseudotuberculosis Pneumonia in a Veterinary Student Infected During Laboratory Work.. Open Forum Infect Dis 2015 Apr;2(2):ofv053.
                                          doi: 10.1093/ofid/ofv053pubmed: 26380345google scholar: lookup
                                        4. Burkovski A. Cell envelope of corynebacteria: structure and influence on pathogenicity.. ISRN Microbiol 2013;2013:935736.
                                          doi: 10.1155/2013/935736pubmed: 23724339google scholar: lookup
                                        5. Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EG, Dorella FA, Aburjaile F, Rocha FS, Nascimento KK, Guimarães LC, Almeida S, Hassan SS, Bakhtiar SM, Pereira UP, Abreu VA, Schneider MP, Miyoshi A, Tauch A, Azevedo V. The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.. PLoS One 2013;8(1):e53818.
                                          doi: 10.1371/journal.pone.0053818pubmed: 23342011google scholar: lookup