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Microbial genomics2026; 12(5); 001722; doi: 10.1099/mgen.0.001722

Integrative and conjugative elements carrying high-level gentamicin resistance genes in Streptococcus dysgalactiae subsp. equisimilis from horses.

Abstract: In streptococci, the acquisition of high-level gentamicin resistance (HLGR) abolishes the synergy with beta-lactams, constituting a medical concern for humans and animals. This synergy between gentamicin and beta-lactams is useful to treat severe infections like endocarditis, among others. HLGR has been characterized mostly in roup B Streptococci mediated by the bi-functional gene (6)-(2).HLGR- subsp. () (=27) were isolated from the uterus of mares during a routine screening before fecundation. One HLGR- was isolated from a lymph node of a mare. The mares resided in six different studs located in four departments of France. HLGR belonged to three sequence types (STs): ST196 (=26), ST223 (=1) and a single locus variant (SLV) of ST200 (=1). For the first time, HLGR was found mediated by the two genes (2″)- and (6')- located on a class 5 integrative mobilizable element (IME), here named HLGR_IME. In HLGR- assigned to ST196 and ST223, the HLGR_IME was inserted in a Tn-type transposon. In the isolate assigned to an ST200-SLV, the HLGR_IME was inserted in an ICE-type element. The Tn-type transposon was able to transfer from HLGR to an erythromycin-resistant strain. The transferability of HLGR from to human pathogens, such as , is a major concern for health. The phylogenetic analysis displayed that from horses constituted a distinct phylogenetic clade from isolated from humans or other animals. Furthermore, we demonstrated that HLGR- belonging to ST196 were able to disseminate among mares within a single stud during 2 years. This clone has also been reported in the USA.Hygiene measures could prevent further dissemination of HLGR streptococci in veterinary settings, preserving horses' health, and the transfer of HLGR to pathogens important in veterinary and human settings.
Publication Date: 2026-05-27 PubMed ID: 42200513PubMed Central: PMC13214566DOI: 10.1099/mgen.0.001722Google Scholar: Lookup
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  • Journal Article

Summary

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Overview

  • This study investigated the presence and characteristics of high-level gentamicin resistance (HLGR) in Streptococcus dysgalactiae subsp. equisimilis strains isolated from horses, focusing on the genetic elements responsible for resistance and their potential for transfer to other bacteria.

Background and Medical Importance

  • Gentamicin is an antibiotic that, when combined with beta-lactams, shows synergy effective for treating severe infections like endocarditis.
  • In streptococci, the acquisition of high-level gentamicin resistance (HLGR) disrupts this valuable synergy, posing a medical concern.
  • HLGR has been mainly studied in group B Streptococci, where it is associated with the bifunctional gene aac(6’)-aph(2”), conferring resistance.

Study Focus and Isolates

  • HLGR was studied in Streptococcus dysgalactiae subsp. equisimilis strains isolated from the uterus of mares during routine pre-fecundation screenings.
  • One strain was also isolated from a mare’s lymph node.
  • The mares were from six different horse studs located in four administrative departments in France.
  • The HLGR isolates belonged to three sequence types (STs): ST196 (26 isolates), ST223 (1 isolate), and a single locus variant (SLV) of ST200 (1 isolate).

Genetic Basis of HLGR

  • This study identified, for the first time, HLGR mediated by the two genes aph(2’’)-Ib and aac(6’)-Im located on a class 5 integrative mobilizable element (IME), named HLGR_IME.
  • In isolates belonging to ST196 and ST223, the HLGR_IME was inserted into a Tn-type transposon.
  • In the isolate assigned to an ST200-SLV, the HLGR_IME was inserted into an integrative and conjugative element (ICE)-type element.

Transfer and Mobility of Resistance

  • The Tn-type transposon harboring HLGR_IME was capable of transferring gentamicin resistance from HLGR Streptococcus dysgalactiae to an erythromycin-resistant recipient strain.
  • This transferability highlights a risk of spreading HLGR genes to human pathogens, including Streptococcus species.

Phylogenetic Findings

  • Phylogenetic analysis showed that Streptococcus dysgalactiae strains from horses formed a distinct clade, separate from strains isolated from humans or other animals.
  • This uniqueness suggests adaptation or specialization of these strains in the equine environment.

Dissemination within Horse Populations

  • HLGR strains belonging to ST196 were shown to disseminate among mares within a single stud over a two-year period.
  • This particular clone had also been reported previously in the USA, indicating an international spread.

Implications and Recommendations

  • The ability of HLGR genes to transfer between streptococci raises concerns for both veterinary and human health.
  • Hygiene measures in veterinary settings are important to prevent further spread of HLGR streptococci among horses.
  • Preventing dissemination may help preserve the efficacy of gentamicin-beta-lactam synergy and reduce the risk of HLGR spreading to important pathogens.

Cite This Article

APA
Rochegüe T, Hughes S, Saras E, Gillet B, Drapeau A, Glaser P, Madec JY, Haenni M, Lupo A. (2026). Integrative and conjugative elements carrying high-level gentamicin resistance genes in Streptococcus dysgalactiae subsp. equisimilis from horses. Microb Genom, 12(5), 001722. https://doi.org/10.1099/mgen.0.001722

Publication

ISSN: 2057-5858
NlmUniqueID: 101671820
Country: England
Language: English
Volume: 12
Issue: 5
PII: 001722

Researcher Affiliations

Rochegüe, Tony
  • ANSES - Université de Lyon, Unité Antibiorésistance et Virulence Bactériennes, Lyon, France.
Hughes, Sandrine
  • Institut de Génomique Fonctionnelle de Lyon (IGFL), CNRS UMR 5242, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Lyon, France.
Saras, Estelle
  • ANSES - Université de Lyon, Unité Antibiorésistance et Virulence Bactériennes, Lyon, France.
Gillet, Benjamin
  • Institut de Génomique Fonctionnelle de Lyon (IGFL), CNRS UMR 5242, Ecole Normale Supérieure de Lyon, Université Claude Bernard Lyon 1, Lyon, France.
Drapeau, Antoine
  • ANSES - Université de Lyon, Unité Antibiorésistance et Virulence Bactériennes, Lyon, France.
Glaser, Philippe
  • Ecology and Evolution of Antibiotic Resistance Unit, Institut Pasteur, Université Paris-Cité, CNRS UMR6047, Paris, France.
Madec, Jean-Yves
  • ANSES - Université de Lyon, Unité Antibiorésistance et Virulence Bactériennes, Lyon, France.
Haenni, Marisa
  • ANSES - Université de Lyon, Unité Antibiorésistance et Virulence Bactériennes, Lyon, France.
Lupo, Agnese
  • ANSES - Université de Lyon, Unité Antibiorésistance et Virulence Bactériennes, Lyon, France.

MeSH Terms

  • Animals
  • Horses / microbiology
  • Streptococcus / genetics
  • Streptococcus / drug effects
  • Streptococcus / isolation & purification
  • Streptococcus / classification
  • Female
  • Gentamicins / pharmacology
  • Streptococcal Infections / veterinary
  • Streptococcal Infections / microbiology
  • Anti-Bacterial Agents / pharmacology
  • Drug Resistance, Bacterial / genetics
  • Horse Diseases / microbiology
  • Conjugation, Genetic
  • DNA Transposable Elements

Conflict of Interest Statement

The authors declare that there are no conflicts of interest.

References

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